Glyma.17g083200

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Report for Sequence Feature Glyma.17g083200

Feature Type:	gene_model
Chromosome:	Gm17
Start:	6455721
stop:	6457502
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.17g083200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G08180.1	AT	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	JGI	N/A	IEA
GO:0000469	GO-bp	cleavage involved in rRNA processing	EnsemblGenomes	N/A	IEA
GO:0000470	GO-bp	maturation of LSU-rRNA	EnsemblGenomes	N/A	IEA
GO:0006412	GO-bp	translation	EnsemblGenomes	N/A	IEA
GO:0031118	GO-bp	rRNA pseudouridine synthesis	EnsemblGenomes	N/A	IEA
GO:0031120	GO-bp	snRNA pseudouridine synthesis	EnsemblGenomes	N/A	IEA
GO:0005730	GO-cc	nucleolus	EnsemblGenomes	N/A	IEA
GO:0031429	GO-cc	box H/ACA snoRNP complex	EnsemblGenomes	N/A	IEA
GO:0003723	GO-mf	RNA binding	EnsemblGenomes	N/A	IEA
GO:0034513	GO-mf	box H/ACA snoRNA binding	EnsemblGenomes	N/A	IEA
KOG3167	KOG	Box H/ACA snoRNP component, involved in ribosomal RNA pseudouridinylation	JGI	N/A	IEA
PTHR23105	Panther	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	JGI	N/A	IEA
PTHR23105:SF12	Panther	H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 2	JGI	N/A	IEA
PF01248	PFAM	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	JGI	N/A	IEA

Expression Patterns of Glyma.17g083200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g083200 not represented in the dataset	Glyma.17g083200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.17g083200 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma17g09070	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.17g083200

Limit To All Plant Sequences

>Glyma.17g083200.2 sequence-type=transcript locus=Glyma.17g083200 ID=Glyma.17g083200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAGCTTTGAACTTTCAAGCTTCTTTCTTCTTCGCCAATTCAGATCGCagacagacacagagagtgagagagggagatggggagcgacagcgaggcagagaagtcggtgcagaaagagaaggagaagaagaagaTGTTGGCCCTGGCTCCCATTGCTAAACCTCTTGCTGGGAAGAAGCTTTGCAAGCGAACCCTAAAACTTGTTCGTAGAGCTGCCGAACACAAATGCTTGAAAAGAGGAGTGAAGGAGGTCGTTAAAAGTATAAGGAGAGGTCATAAAGGATTGTGTGTGATTGCTGGGAACATATCACCGATTGATGTCATCACTCATGTTCCTATTCTTTGTGAAGAGTCTGACATTCCTTATATTTATGTCCCATCTAAAGAAGATCTTGCAGGCGCAGGAGCAACAAAGAGGCCTACTTGCTGTGTTCTGGTACAGACAAAGCCTGCAAAGGGTGAAATAGAGCAAGGGGAACAAGAGAAACTAAAGTCAGATTATGATCAAGTTGTAGCGGAAGTTACTGAGCTTACAACTTCACTCTTTTGAATTAAGCACACATGTATCTACTGTTTGTTTCAGCTGGATTAACATGTGGTATTAGTGTGCCTTACAATCAATTGATGTATGAATTTTATTATTTTTCTATCTTGCTTATTATTTTCTTGTCATATAGTCTACCACTGCCTTATCATTTGCATAATTTGCCTTGTCCACCTTCATGATTTTCCCATGAGGATGCCCGAAGCAATCTTGATTTGAATTTGGAATCTTCTCTTTGGTCATAGTTCTCTACAATTTACAGGGTTTAGGATTTTGATCTTTTTCTTTCCTTGATTCGTGAATCGCATCTAGAGTAAATGTTTCTGAAAGAAGCTTATTGGATGTGTGATGAATTCAGAAAGACTGGCCTGTATAAATTATGCAAATT

Coding sequences of Glyma.17g083200

Limit To All Plant Sequences

>Glyma.17g083200.1 sequence-type=CDS polypeptide=Glyma.17g083200.1.p locus=Glyma.17g083200 ID=Glyma.17g083200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGAGCGACAGCGAGGCAGAGAAGTCGGTGCAGAAAGAGAAGGAGAAGAAGAAGATGTTGGCCCTGGCTCCCATTGCTAAACCTCTTGCTGGGAAGAAGCTTTGCAAGCGAACCCTAAAACTTGTTCGTAGAGCTGCCGAACACAAATGCTTGAAAAGAGGAGTGAAGGAGGTCGTTAAAAGTATAAGGAGAGGTCATAAAGGGTCTGTCTGTTTTCTTTCTAACTTTTTCTTTCTCACAAAAACATTAGAAATGCTTACCCTAATTTTCCGGTATTGTGAATGCAGATTGTGTGTGATTGCTGGGAACATATCACCGATTGATGTCATCACTCATGTTCCTATTCTTTGTGAAGAGTCTGACATTCCTTATATTTATGTCCCATCTAAAGAAGATCTTGCAGGCGCAGGAGCAACAAAGAGGCCTACTTGCTGTGTTCTGGTACAGACAAAGCCTGCAAAGGGTGAAATAGAGCAAGGGGAACAAGAGAAACTAAAGTCAGATTATGATCAAGTTGTAGCGGAAGTTACTGAGCTTACAACTTCACTCTTTTGA

>Glyma.17g083200.2 sequence-type=CDS polypeptide=Glyma.17g083200.2.p locus=Glyma.17g083200 ID=Glyma.17g083200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGAGCGACAGCGAGGCAGAGAAGTCGGTGCAGAAAGAGAAGGAGAAGAAGAAGATGTTGGCCCTGGCTCCCATTGCTAAACCTCTTGCTGGGAAGAAGCTTTGCAAGCGAACCCTAAAACTTGTTCGTAGAGCTGCCGAACACAAATGCTTGAAAAGAGGAGTGAAGGAGGTCGTTAAAAGTATAAGGAGAGGTCATAAAGGATTGTGTGTGATTGCTGGGAACATATCACCGATTGATGTCATCACTCATGTTCCTATTCTTTGTGAAGAGTCTGACATTCCTTATATTTATGTCCCATCTAAAGAAGATCTTGCAGGCGCAGGAGCAACAAAGAGGCCTACTTGCTGTGTTCTGGTACAGACAAAGCCTGCAAAGGGTGAAATAGAGCAAGGGGAACAAGAGAAACTAAAGTCAGATTATGATCAAGTTGTAGCGGAAGTTACTGAGCTTACAACTTCACTCTTTTGA

Predicted protein sequences of Glyma.17g083200

Limit To All Plant Sequences

>Glyma.17g083200.1.p sequence-type=predicted peptide transcript=Glyma.17g083200.1 locus=Glyma.17g083200 ID=Glyma.17g083200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGSDSEAEKSVQKEKEKKKMLALAPIAKPLAGKKLCKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGSVCFLSNFFFLTKTLEMLTLIFRYCECRLCVIAGNISPIDVITHVPILCEESDIPYIYVPSKEDLAGAGATKRPTCCVLVQTKPAKGEIEQGEQEKLKSDYDQVVAEVTELTTSLF*

>Glyma.17g083200.2.p sequence-type=predicted peptide transcript=Glyma.17g083200.2 locus=Glyma.17g083200 ID=Glyma.17g083200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGSDSEAEKSVQKEKEKKKMLALAPIAKPLAGKKLCKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVPSKEDLAGAGATKRPTCCVLVQTKPAKGEIEQGEQEKLKSDYDQVVAEVTELTTSLF*

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