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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G03820.1 | AT | nonsense-mediated mRNA decay NMD3 family protein | JGI | N/A | IEA |
| GO:0000055 | GO-bp | ribosomal large subunit export from nucleus | EnsemblGenomes | N/A | IEA |
| GO:0015031 | GO-bp | protein transport | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0043023 | GO-mf | ribosomal large subunit binding | EnsemblGenomes | N/A | IEA |
| KOG2613 | KOG | NMD protein affecting ribosome stability and mRNA decay | JGI | N/A | IEA |
| PTHR12746 | Panther | NONSENSE-MEDIATED MRNA DECAY PROTEIN 3 | JGI | N/A | IEA |
| PF04981 | PFAM | NMD3 family | JGI | N/A | IEA |
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Glyma.17g081100 not represented in the dataset |
Glyma.17g081100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma17g08880 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g081100.1 sequence-type=CDS polypeptide=Glyma.17g081100.1.p locus=Glyma.17g081100 ID=Glyma.17g081100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCACAGGAATCTGGTATGTTCATGGTTAACCAAACAATTGGCAGTGTTTTGTGCTGCAAATGTGGAATTCCAATGCAACCAAATGCTGCTAAGATGTGTGTGAAGTGTCTGCGATCGGAAGTCGATATTACAGAAGGACTGCTGAAGTGTCTAGTACTGGTGCATTGCCCTGAGTGTGAGAGTTACTTGCAACCACCAAGAAGTTGGGTCAAGCTGCAGCTGGAGTCAAAGGAGCTGCTGACATTTTGCTTAAAGAAATTGCAGAAGAATTTGAATTCGAATAAAGTGAGGTTGGTGCATGCTGAGTTTATTTGGACTGAGCCCCATTCCAGGAGAGTAAAAGTCAAGGTCAAGGTTCAGAAGGAGGTTCTTAATGGAGCAATACTTGAACAATCTTATCCTGTGGAGTATGTTCAACAAGAGCATATGTGTGAATCTTGTTCTAGGGTCCAGGCTAATCCTGACCAGTGGGTTGCTGCTGTGCAACTCAGGCAACATGTTTCTCACCGGCGTACTTTCTTTTACTTGGAGCAGCTGATTCTGAAGCATGGTGCGGCTGCCACTGCTATAAGAATCAAGCAGATGGAACAAGGTATTGACTTCTTTTTCTCTAATCGAAGGAAAGTTGCTCCATTAAGGAGCCATCACGATAAGCAGCTTGTTTCTCATGATCCAAAGAGTAATAACTACAACTACAAATATACATTTTCTGTTGAAATCAGCCCTATTTGCCGTGAGGATCTAATCTGTGTGCCTCCTAGAGTTGCTGCTGGTTTGGGAAATATTGGTCCACTTGTGATTTGCACTAAGGTTACCAACAGCATTGCTTTGCTTGATCCATTTACCTTGAGGCACTGTTTCATAGATGCTGATCAGTACTGGAGAGCATCCTTCAAGTCATTACTTACTAGCAGACAATTGGTGGAATATATTGTGCTGGATGTGGAGACTGTTTCATCTGAGGTTACTATTGGTGACACGAAATATCGTTTAGCAGATGCTCAAGTGGCTCGTATTTCAGATTTTGGAAAGAACGACACGATATTTAACATCAAGACTCATCTTGGCCATCTTTTGAATCCTGGTGATTATGCACTTGGTTATGATCTGTGTGGGGCTAATAGTAATGACATGGAATTGGACAAGTACAAAGGACACATTCCTGAAGCAATTTTAATAAAGAAGAGTTATGAAGAGAAGCACCAAAAGAAACGTGGGAAGCCTCGTTCATGGAAGCTTAAATCACTTGAGATGGAGGTTGATGATAAGGGTAGAGTTGATCAAGGTAAAATGGTCTCAGAATATGAACAATTCATTCAAGATCTGGAAGAAAACCCTGAAATGAGGTTCAACATATCATTGTACTGA
>Glyma.17g081100.1.p sequence-type=predicted peptide transcript=Glyma.17g081100.1 locus=Glyma.17g081100 ID=Glyma.17g081100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAQESGMFMVNQTIGSVLCCKCGIPMQPNAAKMCVKCLRSEVDITEGLLKCLVLVHCPECESYLQPPRSWVKLQLESKELLTFCLKKLQKNLNSNKVRLVHAEFIWTEPHSRRVKVKVKVQKEVLNGAILEQSYPVEYVQQEHMCESCSRVQANPDQWVAAVQLRQHVSHRRTFFYLEQLILKHGAAATAIRIKQMEQGIDFFFSNRRKVAPLRSHHDKQLVSHDPKSNNYNYKYTFSVEISPICREDLICVPPRVAAGLGNIGPLVICTKVTNSIALLDPFTLRHCFIDADQYWRASFKSLLTSRQLVEYIVLDVETVSSEVTIGDTKYRLADAQVARISDFGKNDTIFNIKTHLGHLLNPGDYALGYDLCGANSNDMELDKYKGHIPEAILIKKSYEEKHQKKRGKPRSWKLKSLEMEVDDKGRVDQGKMVSEYEQFIQDLEENPEMRFNISLY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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