SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.17g080600

Feature Type:gene_model
Chromosome:Gm17
Start:6258610
stop:6262626
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.17g080600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G60920.1AT COB JGI N/AIEA
GO:0010215GO-bp cellulose microfibril organization JGI N/AIEA
GO:0016049GO-bp cell growth JGI N/AIEA
GO:0031225GO-cc anchored component of membrane JGI N/AIEA
PTHR31673PantherFam PROTEIN COBRA JGI N/AIEA
PTHR31673:SF3PantherFam PROTEIN COBRA JGI N/AIEA
PF04833Pfam COBRA-like protein JGI N/AIEA

Proteins Associated with Glyma.17g080600
LocusGene SymbolProtein Name
COBL19 Regulates cell wall expansion and cellulose depostion

Gene model name correspondences to Glyma.17g080600 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g08830 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g080600
>Glyma.17g080600.1 sequence-type=CDS polypeptide=Glyma.17g080600.1.p locus=Glyma.17g080600 id=Glyma.17g080600.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGGTGTCTCTGTGGTTATCAACCGCTGGATCTGTTGTCCACCGTGGTGACTTCTTTACCATCTTACTTCTGCCACTGCTCTTGTGCACTACATTCACTTCTACAGAAGCCTATGATGCACTTGATCCAATTGGCAATATTACAATCAAATGGGATGTCATAAGCTGGACTCCAGACGGCTATATTGCTGTTGTTACAATGTACAACTTTCAACAGTATCGCCATATTCAGGCTCCTGGATGGATACTAGGTTGGACATGGGCAAAAAAGGAAGTAATTTGGAATGTAATGGGAGGCCAAACCACAGAGCAAGGGGACTGTTCAAGGTTCAAAGGGAACATCCCTCATTGTTGTAAGAAGGACCCAACCGTAGTGGATTTACTGCCCGGAACTCCTTACAACCAGCAGATTGCAAATTGTTGCTCAGGGGGAGTCTTGACCTCATGGGCCCAGGACCCTGAAAATGCAATAAGTTCATTTCAACTTAGTGTTGGTTCAGCTGGAACAACCAACAAAACTGTCAAACTGCCAAAAAATTTTACCCTCAAAGCACCAGGGCCTGGTTATACCTGTGGCCCTGCCAAGATTGTGAAACCAACTAAATTTATTACTAAAGACAAGAGGAGAACCACTCAGGCATTAATGACCTGGAATGTTACCTGCACATATTCTCAATTCCTGGCTCAGAAGACCCCAACTTGCTGTGTTTCTCTCTCATCCTTCTATAACAATACAGTAGTAAACTGCCCTACCTGCACCTGTGGTTGCCAAAACAAAACAGAACCTGGCAGCTGTGTAGATCCTAATTCCCCACATTTAGCTTCAGTTGTGTCACCACCAGGCAAAGCTACAAATACACCTCTAGTCCGGTGCACGAATCACATGTGTCCTATTCGAGTGCATTGGCACGTGAAGCTTCAATATAAAGAGTACTGGAGGGTCAAGATCACAATTACAAATTTCAACTATAGAATGAACTATTCGCAATGGAACCTTGTTGTGCAGCACCCGAACTTTGATAATGTAACGCAGGTTTTCAGCTTTAATTTCAAGCCACTAACACCTTATGTGGGCTTAAATGATACTGGTATGCTGTGGGGAGTCAAGTTCTACAATGATTTACTCACTTCAGCAGGACCCCTTGGGAATGTGCAGTCTGAGGTCTTATTCCGAAAGGACAAATCATCCTTCACATTTGATAAGGGATGGGCTTTTCCGCGAAGAATTTATTTCAATGGAGATAACTGTGTAATGCCACCGCCGGATGCCTATCCATGGCTGCCAAATGCAAGTTCGAAACTAATTTTCTCTTTACTGAGTACACTCCTAGGCACTTTAGCTTGTGTGGCAATGTTATTGACTTAA

>Glyma.17g080600.2 sequence-type=CDS polypeptide=Glyma.17g080600.2.p locus=Glyma.17g080600 id=Glyma.17g080600.2.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGTACAACTTTCAACAGTATCGCCATATTCAGGCTCCTGGATGGATACTAGGTTGGACATGGGCAAAAAAGGAAGTAATTTGGAATGTAATGGGAGGCCAAACCACAGAGCAAGGGGACTGTTCAAGGTTCAAAGGGAACATCCCTCATTGTTGTAAGAAGGACCCAACCGTAGTGGATTTACTGCCCGGAACTCCTTACAACCAGCAGATTGCAAATTGTTGCTCAGGGGGAGTCTTGACCTCATGGGCCCAGGACCCTGAAAATGCAATAAGTTCATTTCAACTTAGTGTTGGTTCAGCTGGAACAACCAACAAAACTGTCAAACTGCCAAAAAATTTTACCCTCAAAGCACCAGGGCCTGGTTATACCTGTGGCCCTGCCAAGATTGTGAAACCAACTAAATTTATTACTAAAGACAAGAGGAGAACCACTCAGGCATTAATGACCTGGAATGTTACCTGCACATATTCTCAATTCCTGGCTCAGAAGACCCCAACTTGCTGTGTTTCTCTCTCATCCTTCTATAACAATACAGTAGTAAACTGCCCTACCTGCACCTGTGGTTGCCAAAACAAAACAGAACCTGGCAGCTGTGTAGATCCTAATTCCCCACATTTAGCTTCAGTTGTGTCACCACCAGGCAAAGCTACAAATACACCTCTAGTCCGGTGCACGAATCACATGTGTCCTATTCGAGTGCATTGGCACGTGAAGCTTCAATATAAAGAGTACTGGAGGGTCAAGATCACAATTACAAATTTCAACTATAGAATGAACTATTCGCAATGGAACCTTGTTGTGCAGCACCCGAACTTTGATAATGTAACGCAGGTTTTCAGCTTTAATTTCAAGCCACTAACACCTTATGTGGGCTTAAATGATACTGGTATGCTGTGGGGAGTCAAGTTCTACAATGATTTACTCACTTCAGCAGGACCCCTTGGGAATGTGCAGTCTGAGGTCTTATTCCGAAAGGACAAATCATCCTTCACATTTGATAAGGGATGGGCTTTTCCGCGAAGAATTTATTTCAATGGAGATAACTGTGTAATGCCACCGCCGGATGCCTATCCATGGCTGCCAAATGCAAGTTCGAAACTAATTTTCTCTTTACTGAGTACACTCCTAGGCACTTTAGCTTGTGTGGCAATGTTATTGACTTAA
Predicted protein sequences of Glyma.17g080600
>Glyma.17g080600.1.p sequence-type=predicted peptide transcript=Glyma.17g080600.1 locus=Glyma.17g080600 id=Glyma.17g080600.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MVSLWLSTAGSVVHRGDFFTILLLPLLLCTTFTSTEAYDALDPIGNITIKWDVISWTPDGYIAVVTMYNFQQYRHIQAPGWILGWTWAKKEVIWNVMGGQTTEQGDCSRFKGNIPHCCKKDPTVVDLLPGTPYNQQIANCCSGGVLTSWAQDPENAISSFQLSVGSAGTTNKTVKLPKNFTLKAPGPGYTCGPAKIVKPTKFITKDKRRTTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTVVNCPTCTCGCQNKTEPGSCVDPNSPHLASVVSPPGKATNTPLVRCTNHMCPIRVHWHVKLQYKEYWRVKITITNFNYRMNYSQWNLVVQHPNFDNVTQVFSFNFKPLTPYVGLNDTGMLWGVKFYNDLLTSAGPLGNVQSEVLFRKDKSSFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASSKLIFSLLSTLLGTLACVAMLLT*

>Glyma.17g080600.2.p sequence-type=predicted peptide transcript=Glyma.17g080600.2 locus=Glyma.17g080600 id=Glyma.17g080600.2.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MYNFQQYRHIQAPGWILGWTWAKKEVIWNVMGGQTTEQGDCSRFKGNIPHCCKKDPTVVDLLPGTPYNQQIANCCSGGVLTSWAQDPENAISSFQLSVGSAGTTNKTVKLPKNFTLKAPGPGYTCGPAKIVKPTKFITKDKRRTTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTVVNCPTCTCGCQNKTEPGSCVDPNSPHLASVVSPPGKATNTPLVRCTNHMCPIRVHWHVKLQYKEYWRVKITITNFNYRMNYSQWNLVVQHPNFDNVTQVFSFNFKPLTPYVGLNDTGMLWGVKFYNDLLTSAGPLGNVQSEVLFRKDKSSFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASSKLIFSLLSTLLGTLACVAMLLT*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo