Glyma.17g078700

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Report for Sequence Feature Glyma.17g078700

Feature Type:	gene_model
Chromosome:	Gm17
Start:	6130289
stop:	6133632
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.17g078700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G08020.1	AT	RPA70-kDa subunit B	JGI	N/A	IEA
GO:0006260	GO-bp	DNA replication	EnsemblGenomes	N/A	IEA
GO:0006260	GO-bp	DNA replication	JGI	N/A	IEA
GO:0006281	GO-bp	DNA repair	EnsemblGenomes	N/A	IEA
GO:0006310	GO-bp	DNA recombination	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	JGI	N/A	IEA
GO:0003676	GO-mf	nucleic acid binding	EnsemblGenomes	N/A	IEA
GO:0003676	GO-mf	nucleic acid binding	JGI	N/A	IEA
GO:0003677	GO-mf	DNA binding	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	JGI	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
KOG0851	KOG	Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins	JGI	N/A	IEA
PTHR23273	Panther	REPLICATION FACTOR A 1, RFA1	JGI	N/A	IEA
PF01336	PFAM	OB-fold nucleic acid binding domain	JGI	N/A	IEA
PF04057	PFAM	Replication factor-A protein 1, N-terminal domain	JGI	N/A	IEA
PF08646	PFAM	Replication factor-A C terminal domain	JGI	N/A	IEA

Expression Patterns of Glyma.17g078700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g078700 not represented in the dataset	Glyma.17g078700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.17g078700

Paralog	Evidence	Comments
Glyma.05g020600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g078700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma17g08660	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.17g078700

Limit To All Plant Sequences

>Glyma.17g078700.2 sequence-type=transcript locus=Glyma.17g078700 ID=Glyma.17g078700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CACACTCCTCACTATACAAAAACATTTtcactctcactctctcgttatctctcattctctctgttttctcCAAAGCAAAACCTTCCCTACACACTTTCAATGGCCGCCAAAACGGTAACCCCTGACGCCGTTTCGATGCTCCTGGCAAACACTTGCCCCGATTCCTCATCGGATCTCCCCGAAATCGTTGTTCAAGTTCTCGATCTCAAGGCGACAGGCAATAAATACATGTTTACTGCTAATGATGGAAAAACGAAACTGAAAGCTATGATTTCTTCGGATATGTGCTCTCAGGTGCTCTCCGGGGCTATTCAAAACCTAGGTCTTATTCGCGTCCTTGATTACACTGTCAACGTAATACCCAATAAATCGGACAAATACCTCATTGTCACTAAATGTGAACCTGTATCTCCTGCGCTTGAAATTGAGATAAAGAGTGAGGAATCTGGATCTGGGATTCTTTTGAAGTCCAAGGTAGAGGGTGGAGTCAATACTGAAGGTCCTGCTGCTGCTGGGATTCTTCTCAAGCCCAAACAAGTAGTGACAAAATCTGCCAATCAGATTCTACGCGAACATGGAAATTCGGCTCCTGCTGCACGAATGGCAATGACGCGTAGAGTGCGTCCTCTTGTTTCCTTAAACCCTTATCAGGGTAATTGGACAATAAAGGTTAGCGTTACGAGCAAAGGGAACATGCGTAACTATAAAAATGCTAGGGGTGATGGTTGTGTCTTCAATGTCGAATTGACGGATGAAGATGGTACTCAGATTCAGGCAACCATGTTTAATAATGCTGCGAGGAAATTTTATGACAAATTTATTCTGGGAAGGGTTTACTACATTTCAAAGGGGACTTTGAAAGTTGCTAACAAGCAGTTCAAAACCGTGCAAAATGATTATGAAATGACGCTTAATGAGAATTCTGAGGTGGAAGAGGTAGCCGGTGAAGCAAGTTTTGTTCCCGAAACGAAGTTCAACTTTGTGCAGATTGATCAGCTGGGTCCTCATGTAAATAAGTCCGAGCTTGTCGATGTCATTGGGATTGTTAAGAATGTGTCTTCAACAATGACCATTCGTAGGAAGAGCGACAATGAGAGTATTCCAAAGCGTGACATTACTATTGCTGATGACACCAAGAAGACAGTAGTTGTGTCCTTGTGGAATGAACTTGCAACTACCACAGGACAAGAGTTACTGGACATTGTTGATAAATCTCCAGTTGTTGCAATCAAATCTCTCAAGGTTGGGGACTTCCAAGGTGTTTCTTTGTCAACTATAGGCAAAAGTGTGGTTCTGGTAAATCCAGTCATACCCGAAGCAAAAAATCTCAGAAGCTGGTATGATTTTGAAGGCAAGGATGCTGCAATGGACTCTGTAGGCTCTGGTTCAAGTCCAACATCTAACAATGGGATTAGATCAGTGTACACTGATCGTGTTTTACTTTCTGACATAACCTCAAACCCATCATTGGGGGATGGCAAGCCCGCATTTTTCAGTCTTAGAGGACATATAAGCTTCATAAAGCCTGATCAGGCAATGTGGTATCGTGCCTGTAAGACATGCAATAAGAAAGTTACTGAAAGCGTTGGTTCTGGATATTTGTGCGATGGATGCCAGAAAAGCGATGAGCAGTGCAGTTTAAGGAAGCTGAGAAGATCATTGGATGCTCTGCTGATGATCTAGATAACCTTAAATCACAAGAGGGAGAAGTTAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCTCAACATCTTTTTCGGGTAAGTGTTACTCCGAACGAGTATAATGGCGAGAAGAGACAAAGGATAACAGTTCGGGCAGTTGTTCCTGTTGACTTCGCTGCTGAGTCAAGGTTTCTGCTGGAAGATTTATCAAAGATGAGAGCATAAGATGGATATGCGGATTCACAGTTTCTACATTTTTTTGCTAACGGTTGTTTAGTATGTTACCGGTTGTAATTATTAATTAATTCCCTAGGTGGCTTATATTATACATTTTGCCGAGTTTTATAGAATATCTTTGCCATCCACATGGTTACTGATTTTCCATTATGTCATCAGTGATTCCTCAAAAAGCTTTGCCTCAATGAAAGTGATTTTTCTTTC

Coding sequences of Glyma.17g078700

Limit To All Plant Sequences

>Glyma.17g078700.1 sequence-type=CDS polypeptide=Glyma.17g078700.1.p locus=Glyma.17g078700 ID=Glyma.17g078700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGCCAAAACGGTAACCCCTGACGCCGTTTCGATGCTCCTGGCAAACACTTGCCCCGATTCCTCATCGGATCTCCCCGAAATCGTTGTTCAAGTTCTCGATCTCAAGGCGACAGGCAATAAATACATGTTTACTGCTAATGATGGAAAAACGAAACTGAAAGCTATGATTTCTTCGGATATGTGCTCTCAGGTGCTCTCCGGGGCTATTCAAAACCTAGGTCTTATTCGCGTCCTTGATTACACTGTCAACGTAATACCCAATAAATCGGACAAATACCTCATTGTCACTAAATGTGAACCTGTATCTCCTGCGCTTGAAATTGAGATAAAGAGTGAGGAATCTGGATCTGGGATTCTTTTGAAGTCCAAGGTAGAGGGTGGAGTCAATACTGAAGGTCCTGCTGCTGCTGGGATTCTTCTCAAGCCCAAACAAGTAGTGACAAAATCTGCCAATCAGATTCTACGCGAACATGGAAATTCGGCTCCTGCTGCACGAATGGCAATGACGCGTAGAGTGCGTCCTCTTGTTTCCTTAAACCCTTATCAGGGTAATTGGACAATAAAGGTTAGCGTTACGAGCAAAGGGAACATGCGTAACTATAAAAATGCTAGGGGTGATGGTTGTGTCTTCAATGTCGAATTGACGGATGAAGATGGTACTCAGATTCAGGCAACCATGTTTAATAATGCTGCGAGGAAATTTTATGACAAATTTATTCTGGGAAGGGTTTACTACATTTCAAAGGGGACTTTGAAAGTTGCTAACAAGCAGTTCAAAACCGTGCAAAATGATTATGAAATGACGCTTAATGAGAATTCTGAGGTGGAAGAGGTAGCCGGTGAAGCAAGTTTTGTTCCCGAAACGAAGTTCAACTTTGTGCAGATTGATCAGCTGGGTCCTCATGTAAATAAGTCCGAGCTTGTCGATGTCATTGGGATTGTTAAGAATGTGTCTTCAACAATGACCATTCGTAGGAAGAGCGACAATGAGAGTATTCCAAAGCGTGACATTACTATTGCTGATGACACCAAGAAGACAGTAGTTGTGTCCTTGTGGAATGAACTTGCAACTACCACAGGACAAGAGTTACTGGACATTGTTGATAAATCTCCAGTTGTTGCAATCAAATCTCTCAAGGTTGGGGACTTCCAAGGTGTTTCTTTGTCAACTATAGGCAAAAGTGTGGTTCTGGTAAATCCAGTCATACCCGAAGCAAAAAATCTCAGAAGCTGGTATGATTTTGAAGGCAAGGATGCTGCAATGGACTCTGTAGGCTCTGGTTCAAGTCCAACATCTAACAATGGGATTAGATCAGTGTACACTGATCGTGTTTTACTTTCTGACATAACCTCAAACCCATCATTGGGGGATGGCAAGCCCGCATTTTTCAGTCTTAGAGGACATATAAGCTTCATAAAGCCTGATCAGGCAATGTGGTATCGTGCCTGTAAGACATGCAATAAGAAAGTTACTGAAAGCGTTGGTTCTGGATATTTGTGCGATGGATGCCAGAAAAGCGATGAGCAGTGCAGTTTAAGGTATATTATGGTTGCCAAGGTTTCTGATGCAAGCGCTGAGACTTATATCTCTGCCTTTAATCAGGAAGCTGAGAAGATCATTGGATGCTCTGCTGATGATCTAGATAACCTTAAATCACAAGAGGGAGAAGTTAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCTCAACATCTTTTTCGGGTAAGTGTTACTCCGAACGAGTATAATGGCGAGAAGAGACAAAGGATAACAGTTCGGGCAGTTGTTCCTGTTGACTTCGCTGCTGAGTCAAGGTTTCTGCTGGAAGATTTATCAAAGATGAGAGCATAA

>Glyma.17g078700.2 sequence-type=CDS polypeptide=Glyma.17g078700.2.p locus=Glyma.17g078700 ID=Glyma.17g078700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGCCAAAACGGTAACCCCTGACGCCGTTTCGATGCTCCTGGCAAACACTTGCCCCGATTCCTCATCGGATCTCCCCGAAATCGTTGTTCAAGTTCTCGATCTCAAGGCGACAGGCAATAAATACATGTTTACTGCTAATGATGGAAAAACGAAACTGAAAGCTATGATTTCTTCGGATATGTGCTCTCAGGTGCTCTCCGGGGCTATTCAAAACCTAGGTCTTATTCGCGTCCTTGATTACACTGTCAACGTAATACCCAATAAATCGGACAAATACCTCATTGTCACTAAATGTGAACCTGTATCTCCTGCGCTTGAAATTGAGATAAAGAGTGAGGAATCTGGATCTGGGATTCTTTTGAAGTCCAAGGTAGAGGGTGGAGTCAATACTGAAGGTCCTGCTGCTGCTGGGATTCTTCTCAAGCCCAAACAAGTAGTGACAAAATCTGCCAATCAGATTCTACGCGAACATGGAAATTCGGCTCCTGCTGCACGAATGGCAATGACGCGTAGAGTGCGTCCTCTTGTTTCCTTAAACCCTTATCAGGGTAATTGGACAATAAAGGTTAGCGTTACGAGCAAAGGGAACATGCGTAACTATAAAAATGCTAGGGGTGATGGTTGTGTCTTCAATGTCGAATTGACGGATGAAGATGGTACTCAGATTCAGGCAACCATGTTTAATAATGCTGCGAGGAAATTTTATGACAAATTTATTCTGGGAAGGGTTTACTACATTTCAAAGGGGACTTTGAAAGTTGCTAACAAGCAGTTCAAAACCGTGCAAAATGATTATGAAATGACGCTTAATGAGAATTCTGAGGTGGAAGAGGTAGCCGGTGAAGCAAGTTTTGTTCCCGAAACGAAGTTCAACTTTGTGCAGATTGATCAGCTGGGTCCTCATGTAAATAAGTCCGAGCTTGTCGATGTCATTGGGATTGTTAAGAATGTGTCTTCAACAATGACCATTCGTAGGAAGAGCGACAATGAGAGTATTCCAAAGCGTGACATTACTATTGCTGATGACACCAAGAAGACAGTAGTTGTGTCCTTGTGGAATGAACTTGCAACTACCACAGGACAAGAGTTACTGGACATTGTTGATAAATCTCCAGTTGTTGCAATCAAATCTCTCAAGGTTGGGGACTTCCAAGGTGTTTCTTTGTCAACTATAGGCAAAAGTGTGGTTCTGGTAAATCCAGTCATACCCGAAGCAAAAAATCTCAGAAGCTGGTATGATTTTGAAGGCAAGGATGCTGCAATGGACTCTGTAGGCTCTGGTTCAAGTCCAACATCTAACAATGGGATTAGATCAGTGTACACTGATCGTGTTTTACTTTCTGACATAACCTCAAACCCATCATTGGGGGATGGCAAGCCCGCATTTTTCAGTCTTAGAGGACATATAAGCTTCATAAAGCCTGATCAGGCAATGTGGTATCGTGCCTGTAAGACATGCAATAAGAAAGTTACTGAAAGCGTTGGTTCTGGATATTTGTGCGATGGATGCCAGAAAAGCGATGAGCAGTGCAGTTTAAGGAAGCTGAGAAGATCATTGGATGCTCTGCTGATGATCTAG

Predicted protein sequences of Glyma.17g078700

Limit To All Plant Sequences

>Glyma.17g078700.1.p sequence-type=predicted peptide transcript=Glyma.17g078700.1 locus=Glyma.17g078700 ID=Glyma.17g078700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAKTVTPDAVSMLLANTCPDSSSDLPEIVVQVLDLKATGNKYMFTANDGKTKLKAMISSDMCSQVLSGAIQNLGLIRVLDYTVNVIPNKSDKYLIVTKCEPVSPALEIEIKSEESGSGILLKSKVEGGVNTEGPAAAGILLKPKQVVTKSANQILREHGNSAPAARMAMTRRVRPLVSLNPYQGNWTIKVSVTSKGNMRNYKNARGDGCVFNVELTDEDGTQIQATMFNNAARKFYDKFILGRVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVAGEASFVPETKFNFVQIDQLGPHVNKSELVDVIGIVKNVSSTMTIRRKSDNESIPKRDITIADDTKKTVVVSLWNELATTTGQELLDIVDKSPVVAIKSLKVGDFQGVSLSTIGKSVVLVNPVIPEAKNLRSWYDFEGKDAAMDSVGSGSSPTSNNGIRSVYTDRVLLSDITSNPSLGDGKPAFFSLRGHISFIKPDQAMWYRACKTCNKKVTESVGSGYLCDGCQKSDEQCSLRYIMVAKVSDASAETYISAFNQEAEKIIGCSADDLDNLKSQEGEVNPYQMTLKEATWAQHLFRVSVTPNEYNGEKRQRITVRAVVPVDFAAESRFLLEDLSKMRA*

>Glyma.17g078700.2.p sequence-type=predicted peptide transcript=Glyma.17g078700.2 locus=Glyma.17g078700 ID=Glyma.17g078700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAKTVTPDAVSMLLANTCPDSSSDLPEIVVQVLDLKATGNKYMFTANDGKTKLKAMISSDMCSQVLSGAIQNLGLIRVLDYTVNVIPNKSDKYLIVTKCEPVSPALEIEIKSEESGSGILLKSKVEGGVNTEGPAAAGILLKPKQVVTKSANQILREHGNSAPAARMAMTRRVRPLVSLNPYQGNWTIKVSVTSKGNMRNYKNARGDGCVFNVELTDEDGTQIQATMFNNAARKFYDKFILGRVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVAGEASFVPETKFNFVQIDQLGPHVNKSELVDVIGIVKNVSSTMTIRRKSDNESIPKRDITIADDTKKTVVVSLWNELATTTGQELLDIVDKSPVVAIKSLKVGDFQGVSLSTIGKSVVLVNPVIPEAKNLRSWYDFEGKDAAMDSVGSGSSPTSNNGIRSVYTDRVLLSDITSNPSLGDGKPAFFSLRGHISFIKPDQAMWYRACKTCNKKVTESVGSGYLCDGCQKSDEQCSLRKLRRSLDALLMI*

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