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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G29900.1 | AT | Presenilin-2 | JGI | N/A | IEA |
| GO:0006508 | GO-bp | proteolysis | EnsemblGenomes | N/A | IEA |
| GO:0007219 | GO-bp | Notch signaling pathway | EnsemblGenomes | N/A | IEA |
| GO:0016485 | GO-bp | protein processing | EnsemblGenomes | N/A | IEA |
| GO:0000139 | GO-cc | Golgi membrane | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005783 | GO-cc | endoplasmic reticulum | EnsemblGenomes | N/A | IEA |
| GO:0005789 | GO-cc | endoplasmic reticulum membrane | EnsemblGenomes | N/A | IEA |
| GO:0005794 | GO-cc | Golgi apparatus | EnsemblGenomes | N/A | IEA |
| GO:0005887 | GO-cc | integral component of plasma membrane | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | JGI | N/A | IEA |
| GO:0004175 | GO-mf | endopeptidase activity | EnsemblGenomes | N/A | IEA |
| GO:0004190 | GO-mf | aspartic-type endopeptidase activity | EnsemblGenomes | N/A | IEA |
| GO:0004190 | GO-mf | aspartic-type endopeptidase activity | JGI | N/A | IEA |
| GO:0008233 | GO-mf | peptidase activity | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| KOG2736 | KOG | Presenilin | JGI | N/A | IEA |
| PTHR10202 | Panther | PRESENILIN | JGI | N/A | IEA |
| PTHR10202:SF13 | Panther | PRESENILIN HOMOLOG | JGI | N/A | IEA |
| PF01080 | PFAM | Presenilin | JGI | N/A | IEA |
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Glyma.17g078500 not represented in the dataset |
Glyma.17g078500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.05g020800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma17g08640 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g078500.1 sequence-type=CDS polypeptide=Glyma.17g078500.1.p locus=Glyma.17g078500 ID=Glyma.17g078500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCACAAACACAAACCCAGAGACCCTGTTCAAGCGTCCTCGATTCTCTGGGGGAAGAAATTGTGAGAATCGTCGCACCCGTTTCAATATGCATGTTCCTGGTCGTAATCCTGGTCTCAATTCTCAACACCGATTCTTCTCTCTTCGTCGCATCGATGAGCATGGTCACCATCGCGTACAACGAAACAACCTCGGACTCCACCTGGGACAAGTTCCTAGGAGCCCTTCTGAACTCCTTAGCCTTCGTCGTCCTTGTCACCTTCGCAACCTTCGTCTTGGTCCTCCTCTTCTACTTCCGATGCACCAGGTTCTTAAAACTCTACATGGCTTTCTCCACTTTCATCGTGTTGTTATTCCTCGGCGGCGAAGTCTCGATCTTTTTGATCCAAAAGTTTAGTACTCCCATTGATTGCATCACGTTCTTCCTTGTTCTGTGTAATTTCGCTGTTGTGGGTGTTTTGACAGTGTTTATTTCGAAAATGGCGATTCTTGTGACGCAGGGGTATTTGGTTGTTGTTGGAATATTGGTTGCTTATTCGTTTACTATGTTGCCTGAGTGGACCACGTGGGCCCTACTTGTTGCTATGGCGTTGTATGATCTTGCTGCGGTTTTGTTGCCAATTGGGCCGTTAAGGATTTTGGTAGAGCTTGCAATTTCAAGGGATGAGGAAATTCCGGCATTGGTTTATGAGGCTAGGCCGGTGAAGCATGGTAGTTTGGATCCTAGGGAAGTCGCGCAGAGGCGGTTGTGGAGAGAAAGGAGGGTTCAGAGTTTGAATGCTAACAACTCAGTGTTGGCTCATGGCCCCAATAATGCTGAATCACACTCTGATTCGGGTGCGAACGCTGGCGATAACTGGGATGGCGCAAACTTGGTTAGGGAAAACGCGTCTTTGAATTCGAATTTGAATGCTGATAGTTCTGGTGGCTCCTATGGTTATGGAAATTTGGTGAGTGTGGAAGAGGGATGGCTGCGAGTTCAAGAGACTGATTCGGACCTTTCTGCACCCTTGATGGATCGTGGAATGAATGTCCAGCTCGGTAGGGGGGAAGATACTGTGTCGATTGATAACTTGATGCTAGAGGGAATTGGATTGGCTTCTTCTGGTTCAATCAAGTTAGGGCTGGGAGATTTTATCTTCTATAGTGTTTTGGTTGGCAGGGCGGCAATGTATGATTATATGACGGTGTATGCGTGCTATCTTGCTATCATTGCGGGTCTTGGCATAACCTTGATGCTTTTGGCTTTTTATCAGAAAGCTTTGCCTGCTCTTCCCGTGTCAGTCGGAATGGGCGTGTTGTTTTATTTCTTGACCAGGCTTTTACTTGAAGTATTTGTAGTACAATGTTCCTTAAATCTCCTGTTGTTCTAA
>Glyma.17g078500.1.p sequence-type=predicted peptide transcript=Glyma.17g078500.1 locus=Glyma.17g078500 ID=Glyma.17g078500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAQTQTQRPCSSVLDSLGEEIVRIVAPVSICMFLVVILVSILNTDSSLFVASMSMVTIAYNETTSDSTWDKFLGALLNSLAFVVLVTFATFVLVLLFYFRCTRFLKLYMAFSTFIVLLFLGGEVSIFLIQKFSTPIDCITFFLVLCNFAVVGVLTVFISKMAILVTQGYLVVVGILVAYSFTMLPEWTTWALLVAMALYDLAAVLLPIGPLRILVELAISRDEEIPALVYEARPVKHGSLDPREVAQRRLWRERRVQSLNANNSVLAHGPNNAESHSDSGANAGDNWDGANLVRENASLNSNLNADSSGGSYGYGNLVSVEEGWLRVQETDSDLSAPLMDRGMNVQLGRGEDTVSIDNLMLEGIGLASSGSIKLGLGDFIFYSVLVGRAAMYDYMTVYACYLAIIAGLGITLMLLAFYQKALPALPVSVGMGVLFYFLTRLLLEVFVVQCSLNLLLF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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