SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.17g078400

Feature Type:gene_model
Chromosome:Gm17
Start:6118030
stop:6121227
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g078400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G61030.1AT glycine-rich RNA-binding protein 3 JGI N/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
KOG0107 KOG Alternative splicing factor SRp20/9G8 (RRM superfamily) JGI N/AIEA
PTHR24012Panther FAMILY NOT NAMED JGI N/AIEA
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI N/AIEA

Expression Patterns of Glyma.17g078400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g078400
ParalogEvidenceComments
Glyma.05g020900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g078400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g08630 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g078400
>Glyma.17g078400.1 sequence-type=CDS polypeptide=Glyma.17g078400.1.p locus=Glyma.17g078400 ID=Glyma.17g078400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTTCTTTGGTAGAATTGGGAATTTGTTACGACAGACAGCGAGCAGGCAGGTTAGTTCAAAATTGCGTTCGCCCCCTTCATTTTTTCAGGCTATACGCTGTATGTCATCTGCCCCAAGCACAAAACTGTTTATTGGAGGTGTTTCATATTCTACTGACGAGCAAAGCTTGAGGGAAGCTTTTTCAAAATATGGTGAAGTTGTTGATGCTCGGATAATTATGGATCGTGAAACTGGTAGATCCAGAGGATTTGGCTTTATTACATACACTTCGGTTGAGGAGGCATCAAGTGCCATTCAGGCCTTGGATGGTCAGGATCTTCATGGTCGCCCAATTAGGGTGAATTATGCTAATGAAAGACCTCGTGGATATGGTGGTGGTGGCGGCGGCTTTGGTTCATATGGTGCTGTAGGTGGCGGTGGTTATGAAGGTGGTGGTGGCAGCGGTTATCGTGGAAATGTTTCTGATGGTTATGGTGGTGGCAACTATAGTCGAAATGATGGGGGTGGTTATGGATATGGTGCAGGCAGTTATGGATCAGGCGGCAATTATGGGGACAGTGGCCCTGGCAATAACTACTCGGGAGGCTATAGTGGTAGTAACAGTGGACATTTTGGTGATGCCGGTAGTGTAGGCAATCATGAAAGCTCTACTGGTTTTGCCGGTAATGGATATGATGGAAGTGTCGTGGATGGCGGTGTTGGTGCAGGGTCGGAATTTGGCAGCAGTGGCCAATTAGATAGCAAAACAAGCAGCAATGGAGATGAGGGTTTTGGGGATTACAGGGATGACAACGATGCAGATAATTTTGCCAAGAGGGCTTGA
Predicted protein sequences of Glyma.17g078400
>Glyma.17g078400.1.p sequence-type=predicted peptide transcript=Glyma.17g078400.1 locus=Glyma.17g078400 ID=Glyma.17g078400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAFFGRIGNLLRQTASRQVSSKLRSPPSFFQAIRCMSSAPSTKLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSAIQALDGQDLHGRPIRVNYANERPRGYGGGGGGFGSYGAVGGGGYEGGGGSGYRGNVSDGYGGGNYSRNDGGGYGYGAGSYGSGGNYGDSGPGNNYSGGYSGSNSGHFGDAGSVGNHESSTGFAGNGYDGSVVDGGVGAGSEFGSSGQLDSKTSSNGDEGFGDYRDDNDADNFAKRA*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo