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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G64060.1 | AT | respiratory burst oxidase protein F | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0098869 | GO-bp | cellular oxidant detoxification | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0004601 | GO-mf | peroxidase activity | EnsemblGenomes | N/A | IEA |
| GO:0004601 | GO-mf | peroxidase activity | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| GO:0050664 | GO-mf | oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor | EnsemblGenomes | N/A | IEA |
| GO:0050664 | GO-mf | oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor | JGI | N/A | IEA |
| KOG0039 | KOG | Ferric reductase, NADH/NADPH oxidase and related proteins | JGI | N/A | IEA |
| PTHR11972 | Panther | NADPH OXIDASE | JGI | N/A | IEA |
| PTHR11972:SF5 | Panther | NADPH OXIDASE 4 | JGI | N/A | IEA |
| PF01794 | PFAM | Ferric reductase like transmembrane component | JGI | N/A | IEA |
| PF08022 | PFAM | FAD-binding domain | JGI | N/A | IEA |
| PF08030 | PFAM | Ferric reductase NAD binding domain | JGI | N/A | IEA |
| PF08414 | PFAM | Respiratory burst NADPH oxidase | JGI | N/A | IEA |
| GN7V-62557 | SoyCyc9-rxn | NAD(P)H oxidase| Plant Metabolic Network | ISS |
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Glyma.17g078300 not represented in the dataset |
Glyma.17g078300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.05g021100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma17g08610 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g078300.1 sequence-type=CDS polypeptide=Glyma.17g078300.1.p locus=Glyma.17g078300 ID=Glyma.17g078300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGATGGACTTGTAAAGTCTCAAGTTCCTCATGAACGTTCCCTCCTTGCTCTCTTCAAATCATCACCCTCTTCATCATCGTTATCTTCCTCATTCTCTTCTTCTTGGACCTCTGAAGTAGTCCTTCAGACAAGGTCCAAGATTCGGCGTGAAGGTGAGCCTAACAATGTAGCAGACTTGAGATCGGAACAAACACGTTCTCACATAATAGAAAATGAAGCAATTCAAGGTGTGGGATTCATCAATGGCATTGATGGTCACAGTGGAATGGAGTGGAAGGATTTGGAGAAACGGTTCGACCAGGTGGCACGAACCGGAAGTGGAGCCGAACCGGTTGTGACATGGTCCGAATTTGGCTTCTGCATTGGGATGCACTCATCACCAGAGTTTGCCAACGAATTACTCAGAGCACTGAGACGCGGCAAGGGCTGGAAATCCAATATCACCAAAACTGATTTGTACCATCTTTGGTTTCGGATGAAGGATAATTCTTTTAACTCAAGAATGCGAATATTCTTTGACATGTGTAACAGAAACAAGGATGGAAGAATTACCGAGACAGATATAAAGCAGACAATTTTATTAACCGCTTCTACAAATAAGCTATCCGTGACACATGATGAAGCAGAGGACTATGCTTCTTTGATCATGAAATTTCTAGACAAGAAAAACAAAGGCTACATTGAGATATCTCAAATGGGGTCTCTATTCAAGGCAACAAATCTATCAAATTCAAAGGCACATTCTCCAATGAAACAAGTATCATCAGTAGGTAGCAGCACACACAATGTTCTTCATAACACTAGCGGTGACTTTTGTGAAGAACAACAAGAACCAATGTCAAGGACTGAAGTTTTGTTCAGAACTTATTGGAGACGTGCTTGGATTGTTCTGGTTTGGTTGCTTGCATGCTTGGGATTGTTTGTGTGGAAATTTGTTCAATACCGCCATAGATCAGGGTTTGAAGTCATGGGTTATTGTCTTCCTACTGCTAAAGGTGCAGCTGAGACCTTAAAACTCAACATGGCTCTTGTTCTTCTTCCTGTTTGTAGAAACACAATCACGTGGCTCCGCAAACACCGTCCGATCAACTCTGTTGTTCCATTCAATGACAACATTAACTTCCACAAGCTTATTGCAGGAGGAATAGTGGTGGGTGTGATCCTGCACGGTGGAACGCACCTTGCGTGCGATTTCCCAAGAATCAGTGAGTCGGATAAATCAATATTCCGGCAAACTATTGCCGCAGGATTCGGGTACCACCGGCCAACGTACACGCAAATTTTGGCGACGACGGAGGTGGCCAGTGGGATAGGCATGGTGGTGTTAATGGGCATTGCATTTGCACTGGCAGCCAAGTGGCCACGGCGTCGGTCACCGGTGCTGCCGGTGTCCCTCCGTCGTGTCACTGGTTACAACACATTTTGGTACTCTCACCATTTGTTTGTCCTTGTCTATGCCCTGCTCATTATTCACTCCATGTTCTTGTTCCTAACCGACAAGTTGATGGAGAAAACGACATGGATGTACATTGCTTTTCCAGTTTTATTATACGCTGGGGAGAGGATCTTTCGAGCCATTAGATCTGGATCTTACGAAGTTGATATTTTGAAGGCAAGTATATGTCCAGGAAAAGTTTTGTACCTCAAAATGCAAAAACCAGAAGGTTTTAAGTTCCATAGTGGCATGTATATATTCATTCAGTGCCCCCAAATTTCGCCCTTTGAATGGCATCCATTTTCCTTGACTTCAGGGCCACAAGATGACTACCTCAGTGTGCACATTAGAACACTCGGAGACTGGAGCTACCAAATATATGATCTATTCCAAGAGGCAGTGTTATCACGATCAAAAGGGTGTCCAAAACTGTACATAGATGGCCCTTATGGTTCTGCTGCTCAAGACCATGTAAAGTACGACATTCTAGTACTAATTGGTCTTGGCATAGGAGCAACACCTTTCATTAGCATCCTTAAAGATGTAGTTAAAGGTGTCCAGACAACGCAAAATGATCATAGTGGTCTCAGACAATGCAGCCTAACAAAGGGTCCATTAAAAGCATATCTTTATTGGGTTACAAGAGAGCCAAACTCTTTTGACTGGTTTAGAGATGTCATGAAGGAAATCTCAAATTCAACTAAAAAACAGTCGGTTGTGGAGATGCACAATTTCCTGACAAGTGTACATCCAGAAGGAGATATTCGTTCAGCTTTGCTAAGTGTTATTCAGGCCTTGCATGTTGCCAAGAATGGCACTGACATAGTTTCCAGGACTCAAATACACACACATTTTGCTAGACCAAATTGGTTCAACATATTTTCTAGATTGGCTCGCAAGCATGGAGGAGCTAAGATTGGGGTTTTCTATTGTGGACCATCTAAATTAGCAAGAGAATTGAAGAAGTTGTGCACCAAATTTTCCACCAAAACCACAACTAGATTTGTTTTCCACAAGGAAAATTACTAA
>Glyma.17g078300.1.p sequence-type=predicted peptide transcript=Glyma.17g078300.1 locus=Glyma.17g078300 ID=Glyma.17g078300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MDGLVKSQVPHERSLLALFKSSPSSSSLSSSFSSSWTSEVVLQTRSKIRREGEPNNVADLRSEQTRSHIIENEAIQGVGFINGIDGHSGMEWKDLEKRFDQVARTGSGAEPVVTWSEFGFCIGMHSSPEFANELLRALRRGKGWKSNITKTDLYHLWFRMKDNSFNSRMRIFFDMCNRNKDGRITETDIKQTILLTASTNKLSVTHDEAEDYASLIMKFLDKKNKGYIEISQMGSLFKATNLSNSKAHSPMKQVSSVGSSTHNVLHNTSGDFCEEQQEPMSRTEVLFRTYWRRAWIVLVWLLACLGLFVWKFVQYRHRSGFEVMGYCLPTAKGAAETLKLNMALVLLPVCRNTITWLRKHRPINSVVPFNDNINFHKLIAGGIVVGVILHGGTHLACDFPRISESDKSIFRQTIAAGFGYHRPTYTQILATTEVASGIGMVVLMGIAFALAAKWPRRRSPVLPVSLRRVTGYNTFWYSHHLFVLVYALLIIHSMFLFLTDKLMEKTTWMYIAFPVLLYAGERIFRAIRSGSYEVDILKASICPGKVLYLKMQKPEGFKFHSGMYIFIQCPQISPFEWHPFSLTSGPQDDYLSVHIRTLGDWSYQIYDLFQEAVLSRSKGCPKLYIDGPYGSAAQDHVKYDILVLIGLGIGATPFISILKDVVKGVQTTQNDHSGLRQCSLTKGPLKAYLYWVTREPNSFDWFRDVMKEISNSTKKQSVVEMHNFLTSVHPEGDIRSALLSVIQALHVAKNGTDIVSRTQIHTHFARPNWFNIFSRLARKHGGAKIGVFYCGPSKLARELKKLCTKFSTKTTTRFVFHKENY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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