Glyma.17g078100

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Report for Sequence Feature Glyma.17g078100

Feature Type:	gene_model
Chromosome:	Gm17
Start:	6096537
stop:	6099731
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.17g078100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G74250.1	AT	DNAJ heat shock N-terminal domain-containing protein	JGI	N/A	IEA
GO:0003676	GO-mf	nucleic acid binding	EnsemblGenomes	N/A	IEA
GO:0008270	GO-mf	zinc ion binding	EnsemblGenomes	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
KOG0717	KOG	Molecular chaperone (DnaJ superfamily)	JGI	N/A	IEA
PTHR24078	Panther	DNAJ HOMOLOG SUBFAMILY C MEMBER	JGI	N/A	IEA
PTHR24078:SF10	Panther		JGI	N/A	IEA
PF00226	PFAM	DnaJ domain	JGI	N/A	IEA
PF12171	PFAM	Zinc-finger double-stranded RNA-binding	JGI	N/A	IEA

Expression Patterns of Glyma.17g078100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g078100 not represented in the dataset	Glyma.17g078100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.17g078100

Paralog	Evidence	Comments
Glyma.05g021300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g078100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma17g08590	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.17g078100

Limit To All Plant Sequences

>Glyma.17g078100.2 sequence-type=transcript locus=Glyma.17g078100 ID=Glyma.17g078100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAGAGCAAGGATTTGGTATTTTACCAGAAGACGCAAACCCGGAACCCTAACCTTGGGGACAGGCAACCAACAATGGCGTCGTCGTCGGCGGCAAAGCGATGCCACTACGAAGTCCTCGGCCTCCCCCGTGATTGCGCCCCCGATGAGATCCGTTCAGCCTACCGCCGCCTCGCCCTCCAGCGCCACCCGGACAAGCTCGTGAAATCGGGTCTCTCCCAAGAAGAAGCCACCGCGCAGTTCCAGGAACTCCAACACGCCTACGAAGTCCTCTCCGACCCCAAGGAACGCGCCTGGTACGACTCCCACCGCTCCCAAATCCTCTTCTCCGACCCCAACACCGTCTCCAACTCCTTCGTCCCCGACCTCTTCTCCTTCTTTTCCAACACCGTCTATTCCGGCTACACCAACACCGCAAAGGGATTCTACAAGGTCTATTCCGATGTATTCGATAAAATCCACGCCAACGAGATCAATTTCGCGCGCAAATTGGGGCTTGACTCTGATGCGGTTAGACAGGCGCCTGTTATGGGTAATTTAGATAGTCCATACGCGCAGGTTACTGCGTTTTATAGTTATTGGTTAGGGTTTTGTACTGTGATGGATTTTTGCTGGGTGGATGAGTACGATGTTATGGCCGGGCCGAACCGGAAGTCGCGGCGGATTATGGAGGAGGAGAATAATAAGGTGAGGAGGAAGGCGAGGAGGGAGTATAATGACACTGTGAGGAGGTTGGGGGATTTTGTGGAGGAGAGGGAGAATGAGGAGTTATACTGTGTGCTGTGTAAAAAGAAGTTTAAAAGTGACAAGCAGTGGAAGAACCACGAGCAGTCCAAGAAGCATAAGGAGAGGGTCGCTGAGTTTAGGGGTTCGATTGGTGATGATGAGGAGGATTTGgaagaagaagaagaaggagaggaGGGATTGGAAAGTGCAGAAGTTGGGGTGAATGATGAGACTGATAATGGGATTGGTGATTTGGAGGCGAGGATTAAAAATGGTCTTAATGTTGAAGAGGGGGAGACTAGAAATGGGATTGAACTGAATGATGATGATGAGTTTATTGATGCCTCACGTGTGAAGGAAGGCGAAGAGGCCGGTGTGTCTGTTAGTTTTGATGAGGATGGCAATgaagaagaagaagaagaagaagaagaagGTGATATTGAAAATGGTGTTCTTGAAGCAATGGTGGCTGGGCACAAGAACAGAAAACCACGAGCTTCAACACACAAACCCAAGACTTCAGTGGCACCATTGCCAATTGAAAATGAGAATGATGATGAGCTTGGCCCTATGGAATATAACAACCAAAAGGGGGCAAGAAAGAAACGTAGAGCCAAGAAAGAGAAGGGTAGGAAAAATTGGGAAGAGTCTCAGGAGGCTGCTGCCAGTGGGGATTATGAGGATATAATCAGTAATGCAAATGATAATTCTCATGCAGAGGAGTCTTCTTCCCAACATTTTATGGAAAATGAGGATAATGGTATAGAGAATGAGCAGGTTGGTAGAGATGAGAAGATTTCTAATCAACCGGCTGATAAAAAAGGTAGAGATAAGAATATTTCTCAGCAAGCGGCTGATAAAAAAGGAGCTGGCAAGGACACAAAAACTAAAGCAAAAGTTTCATCCAAAGGAAGAAAAGGAAAAGTGGCATCAAAGAATGTTGGCAATATTTGTGATGCATGTGGAGAGGAGTTTGAGACAAGGAATAAATTACATAAACATCTTGGCGATTCTGGGCATGCGACAATAAAAGGTCGATGAAGGAAACAACAGTTAGAATTATTCAAGTTAAGCGTTCCCCCGAGTATAAGGAGTATTGTTCCAGGTCCAGATATTGGCCTGCTCCAATTATTGGTCCATTCTTTAATTCTTAAAATATAGTGTTAAAATCATTTTCAAGTGATCCTTAGGCAGAAATCATTATGTTATTTATGCCACGGTTGAGAAAGATATGGATACAGGGTCTGCACAAATTTGACGGGATCCTTTTGTATGTCAACATAGTAATAGAGATTGGATGATTTAGTAATAGAGATTGAATGATTCTAAATTTTCCTTTTAATATTTTGAGATATTGGGTGTTTAAATTTGTTTGTCAAGATTTTTTTTTAATAAAATAAGCAGTTTCCTGCCTTTT

Coding sequences of Glyma.17g078100

Limit To All Plant Sequences

>Glyma.17g078100.1 sequence-type=CDS polypeptide=Glyma.17g078100.1.p locus=Glyma.17g078100 ID=Glyma.17g078100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTCGTCGTCGGCGGCAAAGCGATGCCACTACGAAGTCCTCGGCCTCCCCCGTGATTGCGCCCCCGATGAGATCCGTTCAGCCTACCGCCGCCTCGCCCTCCAGCGCCACCCGGACAAGCTCGTGAAATCGGGTCTCTCCCAAGAAGAAGCCACCGCGCAGTTCCAGGAACTCCAACACGCCTACGAAGTCCTCTCCGACCCCAAGGAACGCGCCTGGTACGACTCCCACCGCTCCCAAATCCTCTTCTCCGACCCCAACACCGTCTCCAACTCCTTCGTCCCCGACCTCTTCTCCTTCTTTTCCAACACCGTCTATTCCGGCTACACCAACACCGCAAAGGGATTCTACAAGGTCTATTCCGATGTATTCGATAAAATCCACGCCAACGAGATCAATTTCGCGCGCAAATTGGGGCTTGACTCTGATGCGGTTAGACAGGCGCCTGTTATGGGTAATTTAGATAGTCCATACGCGCAGGTTACTGCGTTTTATAGTTATTGGTTAGGGTTTTGTACTGTGATGGATTTTTGCTGGGTGGATGAGTACGATGTTATGGCCGGGCCGAACCGGAAGTCGCGGCGGATTATGGAGGAGGAGAATAATAAGGTGAGGAGGAAGGCGAGGAGGGAGTATAATGACACTGTGAGGAGGTTGGGGGATTTTGTGAAGAAGAGGGATAAGAGGGTGATTGATATGAAGGTGAAGAGGAGTGTGGAGGAGGAGAGGAAGAAGGAGGAGGAGAGGGAGAGGAAGAGGAGGTTGGAGAAGGAGAAGAAGGAGAGGGCTATGGCGTACGAGGAGCCAGAGTGGGCTAAGGTTGACGAGGATGTGGAGGAGGTGGTTGAGGAGGAGGTGGAGGAGAGGGAGAATGAGGAGTTATACTGTGTGCTGTGTAAAAAGAAGTTTAAAAGTGACAAGCAGTGGAAGAACCACGAGCAGTCCAAGAAGCATAAGGAGAGGGTCGCTGAGTTTAGGGGTTCGATTGGTGATGATGAGGAGGATTTGGAAGAAGAAGAAGAAGGAGAGGAGGGATTGGAAAGTGCAGAAGTTGGGGTGAATGATGAGACTGATAATGGGATTGGTGATTTGGAGGCGAGGATTAAAAATGGTCTTAATGTTGAAGAGGGGGAGACTAGAAATGGGATTGAACTGAATGATGATGATGAGTTTATTGATGCCTCACGTGTGAAGGAAGGCGAAGAGGCCGGTGTGTCTGTTAGTTTTGATGAGGATGGCAATGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTGATATTGAAAATGGTGTTCTTGAAGCAATGGTGGCTGGGCACAAGAACAGAAAACCACGAGCTTCAACACACAAACCCAAGACTTCAGTGGCACCATTGCCAATTGAAAATGAGAATGATGATGAGCTTGGCCCTATGGAATATAACAACCAAAAGGGGGCAAGAAAGAAACGTAGAGCCAAGAAAGAGAAGGGTAGGAAAAATTGGGAAGAGTCTCAGGAGGCTGCTGCCAGTGGGGATTATGAGGATATAATCAGTAATGCAAATGATAATTCTCATGCAGAGGAGTCTTCTTCCCAACATTTTATGGAAAATGAGGATAATGGTATAGAGAATGAGCAGGTTGGTAGAGATGAGAAGATTTCTAATCAACCGGCTGATAAAAAAGGTAGAGATAAGAATATTTCTCAGCAAGCGGCTGATAAAAAAGGAGCTGGCAAGGACACAAAAACTAAAGCAAAAGTTTCATCCAAAGGAAGAAAAGGAAAAGTGGCATCAAAGAATGTTGGCAATATTTGTGATGCATGTGGAGAGGAGTTTGAGACAAGGAATAAATTACATAAACATCTTGGCGATTCTGGGCATGCGACAATAAAAGGTCGATGA

>Glyma.17g078100.2 sequence-type=CDS polypeptide=Glyma.17g078100.2.p locus=Glyma.17g078100 ID=Glyma.17g078100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTCGTCGTCGGCGGCAAAGCGATGCCACTACGAAGTCCTCGGCCTCCCCCGTGATTGCGCCCCCGATGAGATCCGTTCAGCCTACCGCCGCCTCGCCCTCCAGCGCCACCCGGACAAGCTCGTGAAATCGGGTCTCTCCCAAGAAGAAGCCACCGCGCAGTTCCAGGAACTCCAACACGCCTACGAAGTCCTCTCCGACCCCAAGGAACGCGCCTGGTACGACTCCCACCGCTCCCAAATCCTCTTCTCCGACCCCAACACCGTCTCCAACTCCTTCGTCCCCGACCTCTTCTCCTTCTTTTCCAACACCGTCTATTCCGGCTACACCAACACCGCAAAGGGATTCTACAAGGTCTATTCCGATGTATTCGATAAAATCCACGCCAACGAGATCAATTTCGCGCGCAAATTGGGGCTTGACTCTGATGCGGTTAGACAGGCGCCTGTTATGGGTAATTTAGATAGTCCATACGCGCAGGTTACTGCGTTTTATAGTTATTGGTTAGGGTTTTGTACTGTGATGGATTTTTGCTGGGTGGATGAGTACGATGTTATGGCCGGGCCGAACCGGAAGTCGCGGCGGATTATGGAGGAGGAGAATAATAAGGTGAGGAGGAAGGCGAGGAGGGAGTATAATGACACTGTGAGGAGGTTGGGGGATTTTGTGGAGGAGAGGGAGAATGAGGAGTTATACTGTGTGCTGTGTAAAAAGAAGTTTAAAAGTGACAAGCAGTGGAAGAACCACGAGCAGTCCAAGAAGCATAAGGAGAGGGTCGCTGAGTTTAGGGGTTCGATTGGTGATGATGAGGAGGATTTGGAAGAAGAAGAAGAAGGAGAGGAGGGATTGGAAAGTGCAGAAGTTGGGGTGAATGATGAGACTGATAATGGGATTGGTGATTTGGAGGCGAGGATTAAAAATGGTCTTAATGTTGAAGAGGGGGAGACTAGAAATGGGATTGAACTGAATGATGATGATGAGTTTATTGATGCCTCACGTGTGAAGGAAGGCGAAGAGGCCGGTGTGTCTGTTAGTTTTGATGAGGATGGCAATGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTGATATTGAAAATGGTGTTCTTGAAGCAATGGTGGCTGGGCACAAGAACAGAAAACCACGAGCTTCAACACACAAACCCAAGACTTCAGTGGCACCATTGCCAATTGAAAATGAGAATGATGATGAGCTTGGCCCTATGGAATATAACAACCAAAAGGGGGCAAGAAAGAAACGTAGAGCCAAGAAAGAGAAGGGTAGGAAAAATTGGGAAGAGTCTCAGGAGGCTGCTGCCAGTGGGGATTATGAGGATATAATCAGTAATGCAAATGATAATTCTCATGCAGAGGAGTCTTCTTCCCAACATTTTATGGAAAATGAGGATAATGGTATAGAGAATGAGCAGGTTGGTAGAGATGAGAAGATTTCTAATCAACCGGCTGATAAAAAAGGTAGAGATAAGAATATTTCTCAGCAAGCGGCTGATAAAAAAGGAGCTGGCAAGGACACAAAAACTAAAGCAAAAGTTTCATCCAAAGGAAGAAAAGGAAAAGTGGCATCAAAGAATGTTGGCAATATTTGTGATGCATGTGGAGAGGAGTTTGAGACAAGGAATAAATTACATAAACATCTTGGCGATTCTGGGCATGCGACAATAAAAGGTCGATGA

Predicted protein sequences of Glyma.17g078100

Limit To All Plant Sequences

>Glyma.17g078100.1.p sequence-type=predicted peptide transcript=Glyma.17g078100.1 locus=Glyma.17g078100 ID=Glyma.17g078100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSSAAKRCHYEVLGLPRDCAPDEIRSAYRRLALQRHPDKLVKSGLSQEEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNTVSNSFVPDLFSFFSNTVYSGYTNTAKGFYKVYSDVFDKIHANEINFARKLGLDSDAVRQAPVMGNLDSPYAQVTAFYSYWLGFCTVMDFCWVDEYDVMAGPNRKSRRIMEEENNKVRRKARREYNDTVRRLGDFVKKRDKRVIDMKVKRSVEEERKKEEERERKRRLEKEKKERAMAYEEPEWAKVDEDVEEVVEEEVEERENEELYCVLCKKKFKSDKQWKNHEQSKKHKERVAEFRGSIGDDEEDLEEEEEGEEGLESAEVGVNDETDNGIGDLEARIKNGLNVEEGETRNGIELNDDDEFIDASRVKEGEEAGVSVSFDEDGNEEEEEEEEEGDIENGVLEAMVAGHKNRKPRASTHKPKTSVAPLPIENENDDELGPMEYNNQKGARKKRRAKKEKGRKNWEESQEAAASGDYEDIISNANDNSHAEESSSQHFMENEDNGIENEQVGRDEKISNQPADKKGRDKNISQQAADKKGAGKDTKTKAKVSSKGRKGKVASKNVGNICDACGEEFETRNKLHKHLGDSGHATIKGR*

>Glyma.17g078100.2.p sequence-type=predicted peptide transcript=Glyma.17g078100.2 locus=Glyma.17g078100 ID=Glyma.17g078100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSSAAKRCHYEVLGLPRDCAPDEIRSAYRRLALQRHPDKLVKSGLSQEEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNTVSNSFVPDLFSFFSNTVYSGYTNTAKGFYKVYSDVFDKIHANEINFARKLGLDSDAVRQAPVMGNLDSPYAQVTAFYSYWLGFCTVMDFCWVDEYDVMAGPNRKSRRIMEEENNKVRRKARREYNDTVRRLGDFVEERENEELYCVLCKKKFKSDKQWKNHEQSKKHKERVAEFRGSIGDDEEDLEEEEEGEEGLESAEVGVNDETDNGIGDLEARIKNGLNVEEGETRNGIELNDDDEFIDASRVKEGEEAGVSVSFDEDGNEEEEEEEEEGDIENGVLEAMVAGHKNRKPRASTHKPKTSVAPLPIENENDDELGPMEYNNQKGARKKRRAKKEKGRKNWEESQEAAASGDYEDIISNANDNSHAEESSSQHFMENEDNGIENEQVGRDEKISNQPADKKGRDKNISQQAADKKGAGKDTKTKAKVSSKGRKGKVASKNVGNICDACGEEFETRNKLHKHLGDSGHATIKGR*

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