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Report for Sequence Feature Glyma.17g077000

Feature Type:gene_model
Chromosome:Gm17
Start:6024225
stop:6026961
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g077000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G29360.1AT UDP-glucose 6-dehydrogenase family protein JGI N/AIEA
GO:0006024GO-bp glycosaminoglycan biosynthetic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0003979GO-mf UDP-glucose 6-dehydrogenase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016616GO-mf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor EnsemblGenomesN/AIEA
GO:0016616GO-mf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor JGI N/AIEA
GO:0051287GO-mf NAD binding EnsemblGenomesN/AIEA
GO:0051287GO-mf NAD binding JGI N/AIEA
KOG2666 KOG UDP-glucose/GDP-mannose dehydrogenase JGI N/AIEA
PTHR11374Panther UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE JGI N/AIEA
PF00984PFAM UDP-glucose/GDP-mannose dehydrogenase family, central domain JGI N/AIEA
PF03720PFAM UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JGI N/AIEA
PF03721PFAM UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JGI N/AIEA
PWY-4821SoyCyc9 UDP-α-D-xylose biosynthesis Plant Metabolic Network ISS
PWY-7346SoyCyc9 UDP-α-D-glucuronate biosynthesis (from UDP-glucose) Plant Metabolic Network ISS
GN7V-51057SoyCyc9-rxn UDP-glucose 6-dehydrogenase Plant Metabolic Network ISS

Expression Patterns of Glyma.17g077000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g077000 not represented in the dataset
Glyma.17g077000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g077000
ParalogEvidenceComments
Glyma.05g022600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g077000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g08491 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g077000
>Glyma.17g077000.1 sequence-type=CDS polypeptide=Glyma.17g077000.1.p locus=Glyma.17g077000 ID=Glyma.17g077000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGAAGATATGTGGAATTGGAGCCGGGTACGTAGGGGGTCCAACAATGGCTGTGATTGCCCTCAAATGCCCCTCAATTGAAGTGGCTGTGGTTGACATCTCTCACTCTCGCATATCAGCTTGGAACAGCAACAAACTCCCCATTTACGAGCCCGGCCTAGAACAAGTGGTGAATCAGTGCAGAGGAAAGAACCTCCTCTTCAGCACCGATGTGGAAAAGCATGTGCATGAGGCAGACATAGTCTTTCTCTCAGTGAACACCCCAACAAAAACCAGAGGGCTTGGAGCCGGCAAGGCCGCGGACTTGACCTATTGGGAGAGTGCAGCTAGGATGATAGCTGATGTTTCAAAGTCTAACAAAATTGTTGTTGAGAAATCCACTGTCCCAGTTAGAACAGCTGAGGCAATTGAGAAAATTCTAACATACAATACTAATAGCAAGGGCATCAAGTATCAAATTCTGTCAAATCCTGAGTTTCTCTCTGAGGGAACAGCTATTCAAGACCTTCTGAACCCTGACCGGGTTCTGATTGGAGGGAATCAATGCCCTGAAGGTTTACAAGCAATTCAAAAACTGAAGGCTATATATGCACATTGGGTGCCTGAAGACAGAATCATAACAACCAATTTGTGGTCTGCAGAACTGTCCAAGTTAGCTGATAATGCCTTTTTGGCACAAAGGATTTCATCTATTAATTCTATGTCTGCCTTATGTGAGGCCACTGGAGCTGAAGTTTCACAAGTTTCTCATGCTCTAAGCAAAAACACCAAAATTGGACCTAAGTTCCTCAATGCTAGTGTTGGTTTTGGTGGCTCTTGTTTTCAAAAGGACATACTCAACTTGGTGTACATATGTGAGAGCAATGGCCTCAATGAAGTGGCTAATTACTGGAAACAAGTGATCAAGATGAATGACTACCAAAAAAATAGGTTTGTGAGGCGGGTCGTGACATCGATGTTCAACACGGTTTCGGGTAAGAAGATTGCAATTCTGGGGTTTGCCTTCAAGAAAGATACTGGTGACACTAGGAAGACTCCTGCAATTGATGTCTGCAAAGGCCTATTGGGAGATAACGCGTGCTTGAGCATCTACGATCCATGTGTTATCGAGGAGCAGATTCAAAAGGATTTGTCAATGGATGGCGTTGAATTTGACCATCCTGTCCACCTGCAGCCAATGAATTCTACTATGGTGAAACAAGTTAGTATTGTTGGGGATGCTTATGAGGCTACTAAAGATGCTCATGGGATATGCATTCTTACAGAGTGGGATGAGTTCAAGAACATTGATTTTCAAAGAGTGTATGACAGCATGCAGAAACCAGCATTTGTGTTTGATGGAAGAAACATATTGAATGCTGAGAAGTTGAGGGAGATTGGATTCATTGTGTACTCAATTGGGAGGCCATTAGAGCAATGGCTAATAAGCATGGCCTAA
Predicted protein sequences of Glyma.17g077000
>Glyma.17g077000.1.p sequence-type=predicted peptide transcript=Glyma.17g077000.1 locus=Glyma.17g077000 ID=Glyma.17g077000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVKICGIGAGYVGGPTMAVIALKCPSIEVAVVDISHSRISAWNSNKLPIYEPGLEQVVNQCRGKNLLFSTDVEKHVHEADIVFLSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSNKIVVEKSTVPVRTAEAIEKILTYNTNSKGIKYQILSNPEFLSEGTAIQDLLNPDRVLIGGNQCPEGLQAIQKLKAIYAHWVPEDRIITTNLWSAELSKLADNAFLAQRISSINSMSALCEATGAEVSQVSHALSKNTKIGPKFLNASVGFGGSCFQKDILNLVYICESNGLNEVANYWKQVIKMNDYQKNRFVRRVVTSMFNTVSGKKIAILGFAFKKDTGDTRKTPAIDVCKGLLGDNACLSIYDPCVIEEQIQKDLSMDGVEFDHPVHLQPMNSTMVKQVSIVGDAYEATKDAHGICILTEWDEFKNIDFQRVYDSMQKPAFVFDGRNILNAEKLREIGFIVYSIGRPLEQWLISMA*






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