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Report for Sequence Feature Glyma.17g075300

Feature Type:gene_model
Chromosome:Gm17
Start:5908293
stop:5912735
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g075300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G24270.4AT aldehyde dehydrogenase 11A3 JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0016620GO-mf oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor EnsemblGenomesN/AIEA
KOG2450 KOG Aldehyde dehydrogenase JGI N/AIEA
PTHR11699Panther ALDEHYDE DEHYDROGENASE-RELATED JGI N/AIEA
PTHR11699:SF29Panther NADP-DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE JGI N/AIEA
PF00171PFAM Aldehyde dehydrogenase family JGI N/AIEA
PWY-1042SoyCyc9 glycolysis IV (plant cytosol) Plant Metabolic Network ISS
PWY-5464SoyCyc9 superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle Plant Metabolic Network ISS
GN7V-40845SoyCyc9-rxn glyceraldehyde-3-phosphate dehydrogenase (NADP+) Plant Metabolic Network ISS

Proteins Associated with Glyma.17g075300
LocusGene SymbolProtein Name
ALDH11A2 aldehyde dehydrogenase 11A2

Expression Patterns of Glyma.17g075300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g075300
ParalogEvidenceComments
Glyma.02g202500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g075300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g08310 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g075300
>Glyma.17g075300.1 sequence-type=CDS polypeptide=Glyma.17g075300.1.p locus=Glyma.17g075300 ID=Glyma.17g075300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCTGGGACTGGACTCTTTGCAGAGATTTTGGATGGAGATGTGTACAAGTACTATGCTGATGGAGAATGGAAGAAATCTGCTTCTGGGAAAAGTGTTGCCATCATCAACCCCACTACCAGAAAGACTCAATACAAAGTTCAAGCTTGTTCACAAGAGGAGGTTAACAAGGTCATGGACTTGGCAAAATCTGCCCAAAAGTTATGGGCAAAGACCCCACTATGGAAACGTGCTGAACTTCTTCACAAGGCAGCTGCTATCCTTAAAGAGCACAAAGCACCAATTGCAGAGTGCCTGGTGAAAGAAATAGCAAAGCCAGCCAAAGATGCTGTTACAGAGGTTGTAAGATCTGGGGATCTGGTTTCTTATACTGCTGAAGAAGGTGTAAGGATTCTGGGAGAGGGAAAGTTCTTGGTGTCGGATAGCTTTCCTGGAAATGAAAGGACGAAATATTGCCTCACATCCAAGATTCCACTTGGAGTGATTTTAGCCATTCCACCTTTTAACTATCCCGTCAATCTTGCTGTTTCCAAAATTGCTCCTGCGCTGATTGCTGGAAACTCCATTGTGCTCAAGCCTCCAACTCAGGGAGCTGTTTCTGCTCTTCATATGGTTCACTGCTTTCACTTGGCTGGTTTTCCCAAAGGCCTAATCAACTGTGTCACTGGCAAAGGCTCAGAAATTGGTGACTTCCTTACAATGCATCCAGGAGTGAACTGTATAAGCTTTACTGGTGGTGATACTGGCATTGCAATTTCAAAGAAGGCAGGCATGATTCCTCTGCAAATGGAGTTGGGAGGAAAAGATGCCTGCATTGTACTTGAAGATGCTGACCTGGATTTGGTTGCTGCAAACATTATAAAGGGAGGTTTTTCATACAGTGGTCAGAGATGCACTGCTGTTAAGGTTGTCCTGGTAATGGAGTCCGCTGCTGATGCTTTGGTTGAGAAAGTGAAGGCTAAGGTGGCAAAACTAACTGTTGGACCACCAGAGGATGACTGTGATATCACCCCGGTTGTGTCAGAATCATCCGCCAATTTCATTGAAGGCCTGGTCTTGGATGCTAAGGAGAAAGGAGCAACATTCTGTCAGGAGTACAAAAGAGAAGGCAATCTCATTTGGCCTTTGCTACTGGACAATGTTAGGCCAGACATGAGAATTGCATGGGAAGAGCCATTTGGACCGGTTTTACCAGTAATTAGGATCAATTCAGTTGAAGAAGGAATCCATCATTGTAATGCTAGCAACTTTGGACTTCAGGGATGTGTCTTCACAAAGGATGTCAACAAAGCAATAATGATCAGTGATGCAATGGAAACGGGAACAGTTCAGATAAATTCTGCCCCAGCTCGTGGGCCAGATCATTTTCCCTTTCAGGGTATAAAGGACAGTGGCATTGGATCTCAAGGGATTACCAACAGCATAAACATGATGACCAAGGTCAAAACGACTGTGATCAACTTACCCAGCCCTTCCTATACTATGGGCTAG
Predicted protein sequences of Glyma.17g075300
>Glyma.17g075300.1.p sequence-type=predicted peptide transcript=Glyma.17g075300.1 locus=Glyma.17g075300 ID=Glyma.17g075300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAGTGLFAEILDGDVYKYYADGEWKKSASGKSVAIINPTTRKTQYKVQACSQEEVNKVMDLAKSAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYTAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVSALHMVHCFHLAGFPKGLINCVTGKGSEIGDFLTMHPGVNCISFTGGDTGIAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESAADALVEKVKAKVAKLTVGPPEDDCDITPVVSESSANFIEGLVLDAKEKGATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTKDVNKAIMISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKVKTTVINLPSPSYTMG*






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