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Report for Sequence Feature Glyma.17g073300

Feature Type:gene_model
Chromosome:Gm17
Start:5732632
stop:5736607
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g073300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G30600.1AT signal recognition particle receptor alpha subunit family protein JGI N/AIEA
GO:0006184GO-bp GTP catabolic process JGI N/AIEA
GO:0006614GO-bp SRP-dependent cotranslational protein targeting to membrane EnsemblGenomesN/AIEA
GO:0006614GO-bp SRP-dependent cotranslational protein targeting to membrane JGI N/AIEA
GO:0006886GO-bp intracellular protein transport EnsemblGenomesN/AIEA
GO:0006886GO-bp intracellular protein transport JGI N/AIEA
GO:0016192GO-bp vesicle-mediated transport EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005785GO-cc signal recognition particle receptor complex EnsemblGenomesN/AIEA
GO:0005785GO-cc signal recognition particle receptor complex JGI N/AIEA
GO:0003924GO-mf GTPase activity EnsemblGenomesN/AIEA
GO:0003924GO-mf GTPase activity JGI N/AIEA
GO:0005047GO-mf signal recognition particle binding EnsemblGenomesN/AIEA
GO:0005047GO-mf signal recognition particle binding JGI N/AIEA
GO:0005525GO-mf GTP binding EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding JGI N/AIEA
KOG0781 KOG Signal recognition particle receptor, alpha subunit JGI N/AIEA
PTHR11564Panther GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINS JGI N/AIEA
PTHR11564:SF8Panther JGI N/AIEA
PF00448PFAM SRP54-type protein, GTPase domain JGI N/AIEA
PF02881PFAM SRP54-type protein, helical bundle domain JGI N/AIEA
PF04086PFAM Signal recognition particle, alpha subunit, N-terminal JGI N/AIEA

Expression Patterns of Glyma.17g073300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g073300
ParalogEvidenceComments
Glyma.02g204600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g073300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g08100 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g073300
>Glyma.17g073300.1 sequence-type=CDS polypeptide=Glyma.17g073300.1.p locus=Glyma.17g073300 ID=Glyma.17g073300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTAGAGCAGTTGCTGATATTCACGCGCGGAGGGCTCATCCTCTGGACCTGCAACCACCTCAGCAACGCCCTGAGGGGATCTCCGATCGACACGTTGATCCGATCCTGCCTCCTGGAGGAGCGATCCGGTGCGGCCTCCTTCAACTACGACGCACCTGGAGCCGCATACTCTCTCAAATGGACCTTCCACAACGACCTAGGCCTCGTCTTTGTCGCCGTCTATCAACGCGTCCTCCACCTCTTGTACGTCGACGATTTGCTCGCCGCCGTCAAGCGCGAGTTCTCGCGCCTCTACCACCCCCAAAAAACCGCCTACCGAGATTTTGACGAGATCTTTCAGCAGCTCCAGATCGAGGCCGAGTCTCGCTCCGAGAATTTCAAAAAACCCAACCCTGTCCCCGCGCTGGCTCCCAATAGGAAACAAAACGGCACGTGGCAGGGGCAGGGGTTAGGGCAAAACGCCGGATCAGAAAAAAAAAGTGATGGAGATGGGAAGAAAGGGCGTAAATTGGAGAATGATAATTTTTCTGTAGCTAATTCTAATTCTAATGCTAATGTTAACCATAGTGGTGGTAAGAGTAGTGTGAATAATAATATTGGGAAAGAGAATGAGAGTTCCAATGTTGGGGCTTTTGATGTAAATAGGCTTCAGAAGCTTAAAGGAAAAAAAGGGAATGGGAACGGGAAGAAGAAAGATGCTCTTGTTGTTGCTGCTGCCAAGGGAGAGCCCAAAAAGGTGGATAAGCCAAACAGGGTTTGGGATCAACCGGCGCCGCAAACCAAACTGGACTTTACTGATCACGTGGATGGAGATGGGGATAGAAGCGCTGACTTTTTGGCTAAGGAGCAAGGAGAGAGTATGATGGATAAAGAAGAGATTCTTAGCAGTGATAGTGAGGTTGAAGATGATGATGATGATACTGGAAAGGATAACATGCCTGTGGCTAAAAAGAAGGGTTGGTTTTCCTCGATGTTCCAGAGTATTGCAGGAAAGGCTAATTTGGAGAAGTCAGACCTGGAACCAGCTTTGAAAGCTCTGAAGGACAGGCTCATGACCAAGAATGTGGCCGAGGAAATAGCTGAGAAACTATGTGAGTCAGTGGCAGCAAGTCTTGAAGGCAAAAAGCTAGCTTCGTTTACAAGGATATCTTCAACAGTGCATACAGCAATGGAAGAAGCACTTGTTCGTATTTTAACCCCTAGGCGTTCCATTGACATATTGAGGGATGTTCATGCTGCCAAGGAGCAAAGGAAGCCATATGTTGTTGTGTTTGTTGGAGTTAATGGAGTTGGAAAATCTACTAATCTAGCTAAGGTTGCTTACTGGCTTCTGCAACACAACGTCAGTGTCATGATGGCTGCTTGTGATACATTTCGATCTGGAGCTGTTGAGCAGCTGCGGACCCATGCACGCAGACTTCAGATTCCTATATTTGAGAAGGGTTATGAAAAAGATCCTGCCATTGTAGCAAAAGAAGCAATTCAGGAAGCTGCGCGCAATGGTTCAGATGTGGTTCTAGTTGATACAGCTGGCCGTATGCAGGATAATGAACCATTGATGAGAGCACTGTCAAAGCTCGTCTACCTCAACAATCCTGACCTTATCTTATTTGTTGGAGAAGCACTGGTTGGTAATGATGCAGTTGATCAGCTTTCGAAATTCAACCAGAAATTAGCCGACCTCTCAACATCTCCCACACCCAGATTGATCGATGGGATCTTGCTCACGAAGTTTGACACTATCGATGATAAGGTGGGAGCTGCACTCTCAATGGTTTACGTATCTGGAGCTCCAGTAATGTTTGTGGGCTGCGGACAGTCCTATACTGACCTCAAGAAACTCAACGTCAAGTCAATTGCGAAGACTCTCCTTAAATGA
Predicted protein sequences of Glyma.17g073300
>Glyma.17g073300.1.p sequence-type=predicted peptide transcript=Glyma.17g073300.1 locus=Glyma.17g073300 ID=Glyma.17g073300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLEQLLIFTRGGLILWTCNHLSNALRGSPIDTLIRSCLLEERSGAASFNYDAPGAAYSLKWTFHNDLGLVFVAVYQRVLHLLYVDDLLAAVKREFSRLYHPQKTAYRDFDEIFQQLQIEAESRSENFKKPNPVPALAPNRKQNGTWQGQGLGQNAGSEKKSDGDGKKGRKLENDNFSVANSNSNANVNHSGGKSSVNNNIGKENESSNVGAFDVNRLQKLKGKKGNGNGKKKDALVVAAAKGEPKKVDKPNRVWDQPAPQTKLDFTDHVDGDGDRSADFLAKEQGESMMDKEEILSSDSEVEDDDDDTGKDNMPVAKKKGWFSSMFQSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVHTAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHNVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAIVAKEAIQEAARNGSDVVLVDTAGRMQDNEPLMRALSKLVYLNNPDLILFVGEALVGNDAVDQLSKFNQKLADLSTSPTPRLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIAKTLLK*






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