SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G02470.1 | AT | S-adenosylmethionine decarboxylase | JGI | N/A | IEA |
| GO:0006557 | GO-bp | S-adenosylmethioninamine biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0006596 | GO-bp | polyamine biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0006597 | GO-bp | spermine biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0006597 | GO-bp | spermine biosynthetic process | JGI | N/A | IEA |
| GO:0008295 | GO-bp | spermidine biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0008295 | GO-bp | spermidine biosynthetic process | JGI | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0004014 | GO-mf | adenosylmethionine decarboxylase activity | EnsemblGenomes | N/A | IEA |
| GO:0004014 | GO-mf | adenosylmethionine decarboxylase activity | JGI | N/A | IEA |
| GO:0016829 | GO-mf | lyase activity | EnsemblGenomes | N/A | IEA |
| GO:0016831 | GO-mf | carboxy-lyase activity | EnsemblGenomes | N/A | IEA |
| KOG0788 | KOG | S-adenosylmethionine decarboxylase | JGI | N/A | IEA |
| PTHR11570 | Panther | S-ADENOSYLMETHIONINE DECARBOXYLASE | JGI | N/A | IEA |
| PF01536 | PFAM | Adenosylmethionine decarboxylase | JGI | N/A | IEA |
| ARGSPECAT-PWY | SoyCyc9 | spermine biosynthesis | Plant Metabolic Network | ISS | |
| BSUBPOLYAMSYN-PWY | SoyCyc9 | spermidine biosynthesis I | Plant Metabolic Network | ISS | |
| POLYAMINSYN3-PWY | SoyCyc9 | superpathway of polyamine biosynthesis II | Plant Metabolic Network | ISS | |
| PWY-7528 | SoyCyc9 | L-methionine salvage cycle I (bacteria and plants) | Plant Metabolic Network | ISS | |
| GN7V-57214 | SoyCyc9-rxn | adenosylmethionine decarboxylase | Plant Metabolic Network | ISS |
|
Glyma.17g070500 not represented in the dataset |
Glyma.17g070500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma17g07830 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g070500.1 sequence-type=CDS polypeptide=Glyma.17g070500.1.p locus=Glyma.17g070500 ID=Glyma.17g070500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTTGAGAGTGAGAAAACAGAAGCAGGCTTCGAAGGGTTTGAGAAGCGCGTGGAGATTTCATTTTCATTCAGCGAGAGCGGGGAGCCCAAGAAACTAGGGCTTAGGGCCCTGAGTGGGGCCCAAATAAAGTCAATTCTGGAAGCCGCCCGTTGCAGCATTGTGTCGCAGCTCTCAAATTCGGAATTGGACTCTTACGTGCTCTCTGAGTCCAGCCTCTTTGTCTTCCCTTTGAAGATCATACTGAAAACTTGCGGCACCACCAGGCTCCTCCTATCCGTTAAGCCCATTCTCGACCTTGCAGCTTCACTATCACTCTCTGTTTTCGCCGTTAAGTACTCGCGCGGCTCCTTTCTTTTCCCAAATGACCAGCCTGCCCCTCACGACACTTTCTTAAACGAAGTTGCATTGCTTAATCACTATTTTGCCCATCTTAATGCCAAGGCCTACGTCATCGGCAACCCAAATCGCTGCTGGCACCTCTACTCCGCCTGCGGCGAAGCTGCCACGTTGTCGTTGACCGTTGAAATTTGCATGACCGGGTTGGACCGCGACAAGGCCCGCGTGTTTCACAAGGAATGGGGAGGGGGCAAAATGACGGAAATGTCCGGGATTTCGGAGATTGTTCAGAGTCACGTGATCTGCGACTTCGAGTTTGAGCCGTGCGGGTACTCCATGAATGGGATCGAGGGTGCGGCGTTTTCTACCGTGCACGTGACCCCGGAAAATGGGTTCAGTTATGGAAGCTACGAGGTGCAGGGGTTGGACCCGGGGTCAAATGGTTTCGGGGCGCTGGTGAGAAAGGTGCTCAAGTGCTTTTGCCCCAGTGACTTCTCTGTTGCTGTCACGTGTGAAGTGGGTGCCGAGGACTGGGCCATGTCGGATGCTGACGTGGAGGGGTATTGCTGCCAGAACGTGGTGAAGCAACAGTTGCTGCCGGGGAAGGGCTGTCTAGTTTACCGGACTTACTCCGCTAGAGGCAGAGGGAGAGGGTCGCCCAAAATAGCCATCGTCAAGTGCAGCAATGAGATTGAGAAGGAGGAGCTTGTGCTTTCTTCCTGTCTCACTTCTACTTAG
>Glyma.17g070500.1.p sequence-type=predicted peptide transcript=Glyma.17g070500.1 locus=Glyma.17g070500 ID=Glyma.17g070500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVESEKTEAGFEGFEKRVEISFSFSESGEPKKLGLRALSGAQIKSILEAARCSIVSQLSNSELDSYVLSESSLFVFPLKIILKTCGTTRLLLSVKPILDLAASLSLSVFAVKYSRGSFLFPNDQPAPHDTFLNEVALLNHYFAHLNAKAYVIGNPNRCWHLYSACGEAATLSLTVEICMTGLDRDKARVFHKEWGGGKMTEMSGISEIVQSHVICDFEFEPCGYSMNGIEGAAFSTVHVTPENGFSYGSYEVQGLDPGSNGFGALVRKVLKCFCPSDFSVAVTCEVGAEDWAMSDADVEGYCCQNVVKQQLLPGKGCLVYRTYSARGRGRGSPKIAIVKCSNEIEKEELVLSSCLTST*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
