Glyma.17g068400

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Report for Sequence Feature Glyma.17g068400

Feature Type:	gene_model
Chromosome:	Gm17
Start:	5332798
stop:	5338912
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.17g068400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G57740.1	AT	XB3 ortholog 2 in Arabidopsis thaliana	JGI	N/A	IEA
GO:0005515	GO-mf	protein binding	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
KOG4412	KOG	26S proteasome regulatory complex, subunit PSMD10	JGI	N/A	IEA
PTHR24128	Panther	FAMILY NOT NAMED	JGI	N/A	IEA
PTHR24128:SF158	Panther		JGI	N/A	IEA
PF00023	PFAM	Ankyrin repeat	JGI	N/A	IEA
GN7V-65654	SoyCyc9-rxn	3,5-dihydroxyanisole O-methyltransferase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.17g068400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.17g068400

Paralog	Evidence	Comments
Glyma.13g091900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g068400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma17g07600	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.17g068400

Limit To All Plant Sequences

>Glyma.17g068400.2 sequence-type=transcript locus=Glyma.17g068400 ID=Glyma.17g068400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCACTTCTCGCTATATTTATCTAACAAACTAAATTATTCCTCACTTAAATTGGACATTCTCTCCCAAATGGGCAATCAATTAGTAATAATATTCCACATGTAATTAAATCAAAACACAATCAATTCGGTGTTAATAATATTTCATGTAATTAAGATAGGTGTTTGACCCCTGGGTAAAAAGTAGTACCACCTTTGAGGCCTCGATCTGTGTGGTGTTTGATAGAGCAAACAGTTATAAGGAATTCTAATTCTTCCACCGCAAAGGGAGGGGACAACGAAAGAAACGACACAACTACCAAGTTGACTCATTAATAATATCCAATCATGGTGACACGCCTTTTGTTGTTGCCTCAAGAAGCTGAAACTTGCCTTTTCCAATTACATCTGTCACCCTTTTGGATATTCCATCTATCTATCTTCTTAGGCATTATTTTTAGCAAATTGCCAGTTTAAGCAAAAGAAATATCTTTTCCCGTTTTCATCGTTGTAATTGGTTTTGCATCTGTTGGGGGCTGATGGTGGAGGTTTGATGCGATCAATCCTCTCCCAGAAAACCACATATTGCCCTTCCGGGTTTTCATCCTTCCGAGGTTAAGGTTGTGGGATTTTCATGCTTATGTGGGTTGTGTAATTTGGAAGGTGATTAATGGCAAATGGTTATTCCTCAAATGATTGTTTGAAAGGAATAGTAGAAAATTGGTGTCTGTCAGGTTCACAGTATCAGCTTGGCAAATTGAAATAGAATAGAGATTTTTCCCAAGAATTTTCGGATTGTTCAAGATTTGATGACTTCATGTCGGGGGTGTTTGTCCAAAAGGGAATTTGAGGCCTTTTGATGAGGCTGTGAAGGGACCCCTGCTTCGAAATTCCTGAATAGTTTAGTCAATTGTGTTTTTTGTCGTGATTGCTAAGGGACATGAAGTTTCTGAGCATTGTGGGAAATTCTTTTGGATGTTCTGCATCCGGTGAGCGCCTAGTTTCTGCAGCAAGAGATGGGGATATTCAAGAGGCCAAGGCCTTGTTGGAATATAACCCTCGTCTTGCTAGGTATTCCACATTCGGAGTTCGCAATTCCCCTTTGCATTATTCTGCAGCTCATGGCCACCATGAGATAGTGAATCTCTTGCTTGAGTCCGGAGTTGATATCAATCTCAGGAACTATCGCGGTCAGACTGCATTGATGCAAGCTTGTCAACATGGTCACTGGGAGGTGGTTCAGACCCTGATTATATTTAATGCCAATATCCATAAAGCTGATTACCTAAATGGAGGTACTGTCCTTCACTTGGCTGCTTTGAATGGCCATACCCGGTGCATTCGACTCATCCTCGCAGACTATATACCTAGCGTCCCTAACTTTTGGAATGCATTACAGACAGGTGATCATAAATCAATCTCAGAATTTGATCAAAGTGGACTCTGCGAGGTGATTAACAGAACTGCTGATGGAGGCATCACTGCTCTGCATATGGCAGTATTAAATGGGCATGCTGAAAGTGTGCAATTACTCTTGGACTTGGGAGCTTCTGTGTCTGAGGTTACTGTGGAGGATGGAACTACCATTGACTTAATTGGTTCTGGAAGCACTCCACTCCATTATGCTGCATGTGGTGGAAATCAACAATGCTGTCAACTGTTGATTGCCAAGGGTGCCAATCTGACTGCTGAGAATGCAAATGGATGGACCCCCTTGATGGTTGCTCGTTCGTGGCGTAGAGACTGGCTTGAGGACATCTTAAAAACACCTCCAGAAGACCCCTTACAAGTTCTTCCTTCTCCATATATATCTCTTCCACTTATGAGCATTGTGAGAATTGCTAGAGAATGTGGATGGAGGACAAGTGATTTAGCACCATGCTTAGATCCATGCGCTGTTTGTTTGGAAAGGAAATGTATGGTCGCTGTAGAAGGTTGTGATCACGAGTTCTGCACACAATGTGCCATGTATCTTTGTTCTACAAACTCTACCTCAACAACCACAACAGGCCCCCCAGGTTCAATTGCTTGCCCTCTCTGCAGGCACGGCATAGTCTCATTTGTGAAGCTTCCAGACGCCAGGCCTTTACATAAGGAAATGCAAAGGACATCAAACTTGTCCCTAACATTATGCACATGTTCAAGTGAGGTCTTGGGAGATTCCAGTGACATGACCACCCCATTTTGCAAACCAACTTCTTCTCGTGGATCCAAAAGTTCTTCCCCATCAAGATCATTTCGCTCCATGAGTTGCCAAGGGTTCCCCTCATTCAGAATGAACCCCAGCCTTTGCTTGGGAGCAGATGTTAGCCCCTCCTTAGTCCCTTGCACTGTGAGCAGAAACGTTAGGAACCACTTGGCAAGGTGTTCTGGTTCCACTTTCAGACGTTCATCTTCTCAAACAGAAAGAAGGAAGTCATCATGGTTTTGTTCCCTCAATCAATCTGTTGCCACAGGTGGCAATAGATGCTGATTACATTTTGCTCTTTTCATCATCCTTGTTATATTATACTCGTGATTCCAAATATCATCCACTGTTCACTACATTGACTGTAAATACCAAAGCCCAATTAAATTTCTTTTTTGGCAACATATTTCACAACACAATTTTTGCAAGATTCATGTTTGGTGCTTGTAAATGCAAACTGCTCAATGTGAAATTCGTGACTTACATAATTATCAATAGCAAACCTGTAAACTATTTAA

Coding sequences of Glyma.17g068400

Limit To All Plant Sequences

>Glyma.17g068400.1 sequence-type=CDS polypeptide=Glyma.17g068400.1.p locus=Glyma.17g068400 ID=Glyma.17g068400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGTTTCTGAGCATTGTGGGAAATTCTTTTGGATGTTCTGCATCCGGTGAGCGCCTAGTTTCTGCAGCAAGAGATGGGGATATTCAAGAGGCCAAGGCCTTGTTGGAATATAACCCTCGTCTTGCTAGGTATTCCACATTCGGAGTTCGCAATTCCCCTTTGCATTATTCTGCAGCTCATGGCCACCATGAGATAGTGAATCTCTTGCTTGAGTCCGGAGTTGATATCAATCTCAGGAACTATCGCGGTCAGACTGCATTGATGCAAGCTTGTCAACATGGTCACTGGGAGGTGGTTCAGACCCTGATTATATTTAATGCCAATATCCATAAAGCTGATTACCTAAATGGAGGTACTGTCCTTCACTTGGCTGCTTTGAATGGCCATACCCGGTGCATTCGACTCATCCTCGCAGACTATATACCTAGCGTCCCTAACTTTTGGAATGCATTACAGACAGGTGATCATAAATCAATCTCAGAATTTGATCAAAGTGGACTCTGCGAGGTGATTAACAGAACTGCTGATGGAGGCATCACTGCTCTGCATATGGCAGTATTAAATGGGCATGCTGAAAGTGTGCAATTACTCTTGGACTTGGGAGCTTCTGTGTCTGAGGTTACTGTGGAGGATGGAACTACCATTGACTTAATTGGTTCTGGAAGCACTCCACTCCATTATGCTGCATGTGGTGGAAATCAACAATGCTGTCAACTGTTGATTGCCAAGGGTGCCAATCTGACTGCTGAGAATGCAAATGGATGGACCCCCTTGATGGTTGCTCGTTCGTGGCGTAGAGACTGGCTTGAGGACATCTTAAAAACACCTCCAGAAGACCCCTTACAAGTTCTTCCTTCTCCATATATATCTCTTCCACTTATGAGCATTGTGAGAATTGCTAGAGAATGTGGATGGAGGACAAGTGATTTAGCACCATGCTTAGATCCATGCGCTGTTTGTTTGGAAAGGAAATGTATGGTCGCTGTAGAAGGTTGTGATCACGAGTTCTGCACACAATGTGCCATGTATCTTTGTTCTACAAACTCTACCTCAACAACCACAACAGGCCCCCCAGGTTCAATTGCTTGCCCTCTCTGCAGGCACGGCATAGTCTCATTTGTGAAGCTTCCAGACGCCAGGCCTTTACATAAGGAAATGCAAAGGACATCAAACTTGTCCCTAACATTATGCACATGTTCAAGTGAGGTCTTGGGAGATTCCAGTGACATGACCACCCCATTTTGCAAACCAACTTCTTCTCGTGGATCCAAAAGTTCTTCCCCATCAAGATCATTTCGCTCCATGAGTTGCCAAGGGTTCCCCTCATTCAGAATGAACCCCAGCCTTTGCTTGGGAGCAGATGTTAGCCCCTCCTTAGTCCCTTGCACTGTGAGCAGAAACGTTAGGAACCACTTGGCAAGGTGTTCTGGTTCCACTTTCAGACGTTCATCTTCTCAAACAGAAAGAAGGAAGTCATCATGGTTTTGTTCCCTCAATCAATCTGTTGCCACAGGTGGCAATAGATGCTGA

>Glyma.17g068400.2 sequence-type=CDS polypeptide=Glyma.17g068400.2.p locus=Glyma.17g068400 ID=Glyma.17g068400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGTTTCTGAGCATTGTGGGAAATTCTTTTGGATGTTCTGCATCCGGTGAGCGCCTAGTTTCTGCAGCAAGAGATGGGGATATTCAAGAGGCCAAGGCCTTGTTGGAATATAACCCTCGTCTTGCTAGGTATTCCACATTCGGAGTTCGCAATTCCCCTTTGCATTATTCTGCAGCTCATGGCCACCATGAGATAGTGAATCTCTTGCTTGAGTCCGGAGTTGATATCAATCTCAGGAACTATCGCGGTCAGACTGCATTGATGCAAGCTTGTCAACATGGTCACTGGGAGGTGGTTCAGACCCTGATTATATTTAATGCCAATATCCATAAAGCTGATTACCTAAATGGAGGTACTGTCCTTCACTTGGCTGCTTTGAATGGCCATACCCGGTGCATTCGACTCATCCTCGCAGACTATATACCTAGCGTCCCTAACTTTTGGAATGCATTACAGACAGGTGATCATAAATCAATCTCAGAATTTGATCAAAGTGGACTCTGCGAGGTGATTAACAGAACTGCTGATGGAGGCATCACTGCTCTGCATATGGCAGTATTAAATGGGCATGCTGAAAGTGTGCAATTACTCTTGGACTTGGGAGCTTCTGTGTCTGAGGTTACTGTGGAGGATGGAACTACCATTGACTTAATTGGTTCTGGAAGCACTCCACTCCATTATGCTGCATGTGGTGGAAATCAACAATGCTGTCAACTGTTGATTGCCAAGGGTGCCAATCTGACTGCTGAGAATGCAAATGGATGGACCCCCTTGATGGTTGCTCGTTCGTGGCGTAGAGACTGGCTTGAGGACATCTTAAAAACACCTCCAGAAGACCCCTTACAAGTTCTTCCTTCTCCATATATATCTCTTCCACTTATGAGCATTGTGAGAATTGCTAGAGAATGTGGATGGAGGACAAGTGATTTAGCACCATGCTTAGATCCATGCGCTGTTTGTTTGGAAAGGAAATGTATGGTCGCTGTAGAAGGTTGTGATCACGAGTTCTGCACACAATGTGCCATGTATCTTTGTTCTACAAACTCTACCTCAACAACCACAACAGGCCCCCCAGGTTCAATTGCTTGCCCTCTCTGCAGGCACGGCATAGTCTCATTTGTGAAGCTTCCAGACGCCAGGCCTTTACATAAGGAAATGCAAAGGACATCAAACTTGTCCCTAACATTATGCACATGTTCAAGTGAGGTCTTGGGAGATTCCAGTGACATGACCACCCCATTTTGCAAACCAACTTCTTCTCGTGGATCCAAAAGTTCTTCCCCATCAAGATCATTTCGCTCCATGAGTTGCCAAGGGTTCCCCTCATTCAGAATGAACCCCAGCCTTTGCTTGGGAGCAGATGTTAGCCCCTCCTTAGTCCCTTGCACTGTGAGCAGAAACGTTAGGAACCACTTGGCAAGGTGTTCTGGTTCCACTTTCAGACGTTCATCTTCTCAAACAGAAAGAAGGAAGTCATCATGGTTTTGTTCCCTCAATCAATCTGTTGCCACAGGTGGCAATAGATGCTGA

Predicted protein sequences of Glyma.17g068400

Limit To All Plant Sequences

>Glyma.17g068400.1.p sequence-type=predicted peptide transcript=Glyma.17g068400.1 locus=Glyma.17g068400 ID=Glyma.17g068400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKFLSIVGNSFGCSASGERLVSAARDGDIQEAKALLEYNPRLARYSTFGVRNSPLHYSAAHGHHEIVNLLLESGVDINLRNYRGQTALMQACQHGHWEVVQTLIIFNANIHKADYLNGGTVLHLAALNGHTRCIRLILADYIPSVPNFWNALQTGDHKSISEFDQSGLCEVINRTADGGITALHMAVLNGHAESVQLLLDLGASVSEVTVEDGTTIDLIGSGSTPLHYAACGGNQQCCQLLIAKGANLTAENANGWTPLMVARSWRRDWLEDILKTPPEDPLQVLPSPYISLPLMSIVRIARECGWRTSDLAPCLDPCAVCLERKCMVAVEGCDHEFCTQCAMYLCSTNSTSTTTTGPPGSIACPLCRHGIVSFVKLPDARPLHKEMQRTSNLSLTLCTCSSEVLGDSSDMTTPFCKPTSSRGSKSSSPSRSFRSMSCQGFPSFRMNPSLCLGADVSPSLVPCTVSRNVRNHLARCSGSTFRRSSSQTERRKSSWFCSLNQSVATGGNRC*

>Glyma.17g068400.2.p sequence-type=predicted peptide transcript=Glyma.17g068400.2 locus=Glyma.17g068400 ID=Glyma.17g068400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKFLSIVGNSFGCSASGERLVSAARDGDIQEAKALLEYNPRLARYSTFGVRNSPLHYSAAHGHHEIVNLLLESGVDINLRNYRGQTALMQACQHGHWEVVQTLIIFNANIHKADYLNGGTVLHLAALNGHTRCIRLILADYIPSVPNFWNALQTGDHKSISEFDQSGLCEVINRTADGGITALHMAVLNGHAESVQLLLDLGASVSEVTVEDGTTIDLIGSGSTPLHYAACGGNQQCCQLLIAKGANLTAENANGWTPLMVARSWRRDWLEDILKTPPEDPLQVLPSPYISLPLMSIVRIARECGWRTSDLAPCLDPCAVCLERKCMVAVEGCDHEFCTQCAMYLCSTNSTSTTTTGPPGSIACPLCRHGIVSFVKLPDARPLHKEMQRTSNLSLTLCTCSSEVLGDSSDMTTPFCKPTSSRGSKSSSPSRSFRSMSCQGFPSFRMNPSLCLGADVSPSLVPCTVSRNVRNHLARCSGSTFRRSSSQTERRKSSWFCSLNQSVATGGNRC*

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