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Report for Sequence Feature Glyma.17g065600

Feature Type:gene_model
Chromosome:Gm17
Start:5059138
stop:5068637
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g065600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G30310.2AT FGGY family of carbohydrate kinase JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0005975GO-bp carbohydrate metabolic process JGI N/AIEA
GO:0016773GO-mf phosphotransferase activity, alcohol group as acceptor EnsemblGenomesN/AIEA
GO:0016773GO-mf phosphotransferase activity, alcohol group as acceptor JGI N/AIEA
KOG2517 KOG Ribulose kinase and related carbohydrate kinases JGI N/AIEA
PTHR10196Panther SUGAR KINASE JGI N/AIEA
PTHR10196:SF8Panther JGI N/AIEA
PF00370PFAM FGGY family of carbohydrate kinases, N-terminal domain JGI N/AIEA
PF02782PFAM FGGY family of carbohydrate kinases, C-terminal domain JGI N/AIEA
GN7V-54929SoyCyc9-rxn ribulokinase Plant Metabolic Network ISS

Expression Patterns of Glyma.17g065600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g065600
ParalogEvidenceComments
Glyma.13g094600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g065600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g07310 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.17g065600
>Glyma.17g065600.2 sequence-type=transcript locus=Glyma.17g065600 ID=Glyma.17g065600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTAAACTCTTAAAGTACAATTTACCACTATGAAATTCGCGACCTTACACAGAGATGAAAATATTCATAATTAAAACTTAAACCAGTGATGATCGACGAATGCTGACAATCGATATTTGATTTTGATAGGGAAAACAAATCAAAACAAAGATATTAAATAAATAGAGACAAAGAAGAAGCGATTGATAATGTCCGGCACAAGAAGGGTTTCGTCCGATACACACTCTCTCTCCGTCGAAATGGCCGCTTCTTCTTCCTCTCCCGACGAGCCTTCTCGCTCCGTCTTCCTCGGCGTCGACGTCGGCACCGGCAGCGCTCGTGCAGGTCTATTTGACGAGGAAGGAAAGCTTCTTGGTTCATCTAGCAGCTCAATACAAATATGGAAAGACGGTGCCTGTGTTGAGCAATCCTCTACAGATATATGGCTTGCAGTTTGTGCAGCTGTAAAAGCAGCTTGCTCTAAAGCTGAAGTTGCACCAACAGAAGTAAAGGGTATGGGATTTGCTGCTACTTGTTCTCTTGTTGCTGTGGATTCCGACAGCTCACCTGTTTCAGTTTCTTGGAGTGGTGATTCAAGAAGAAATGTGATTGTATGGATGGATCATAGAGCTGTAGAACAAGCCGAAAGGATCAATTCCTCTAAATCACCTGTATTGGAGTACTGTGGTGGAGCTGTTTCACCTGAAATGGAGCCACCAAAGCTTCTATGGGTTAAAGAAAATTTGCAAGAATCTTGGTCAATGGTTTTCAGGTGGATGGACTTAAGCGATTGGTTGTCATACAGGGCAACCGGTGATGATACTCGCAGTCTATGCACCACAGTTTGTAAATGGACATATCTGGGTCATGCACACATGCAGCATGTCAATGATAAAGAGTCTCGAGACATGGAAGCTTGTGGATGGGATGATGATTTTTGGGAGGAAATTGGTTTGGGTGATCTTATTGAAGGACATCATGCGAAGATAGGACGAAGTGTTGCTTTCCCTGGCCATCCTTTGGGTTCTGGCCTTACTCCTACTGCAGCAAAGGAACTGGGTCTGGTACCAGGAATTCCTGTTGGGACATCATTAATTGATGCTCATGCTGGTGGCGTGGGGGTAATTGAAAGTGTGCCACCATCAGAAGCTGAAGAACATGACATGGAAGCAATTTGCAACCGTATGGTGTTAGTTTGTGGAACTTCTACATGCCATATGGCTGTATCGCGGAGCAAATTGTTCATACCTGGGGTTTGGGGTCCATTTTGGTCAGCAATGGTACCAGAATATTGGCTAACGGAAGGTGGGCAGAGTGCTACTGGTGCATTATTGGATCATATAATTGAAAACCATGCTGCTTCTGCACGCCTTGCAAATCAAGCTGCTACCCAAAAGATTTCATTGTTTGAGCTTCTGAACAAGATGTTGGAAACAATGATAGTTGAGCTGAACCTATCCTTTATTGCTGCCTTGACTGAAGATGTACATGTTCTTCCTGACTTCCATGGGAATAGGTCACCCATTGCAGATCCAAAAGCAAAAGGAGTCATCTATGGTTTGACACTTGACACAAGTGACAAACAGTTGGCTCTTCTTTACCTGGCTACTGTGCAGGGCATTGCATATGGCACACGTCACATTGTAGAGCATTGCAATGCTCATGGTCACAAAATAAACACACTACTTGCATGTGGCGGCCTTTCAAAGAATCCTATCTTCATGCAGGAACATGCTGATATTATTGGTATGTGTTGAGGAGTGGGGTGGGTTGCCCTATAATTCTTCCAAGGGAAAGTGAATCTGTGCTCTTGGGTGCTGCTATTCTGGGTGCCGTTGCTACAAGAAAATATCATAGCCTTAGCGAGGCCATGAAAGCCCTGAATGCAGCTGGCCAGGTCATTCATCCATCTAAGGATCCAAAGGTAAAAAAGTACCATGATGCCAAATACAAGATCTTCCGTGGCCTTTATGAACAGCAGTTCTCATATCGTTCTACGATGGCCCAAGCCTTGTCATAGCTTTGCAGAATGTTTTGACTCAAACTGTCAATTGCAGTTAGGTGCTCCTTGCGAAGATTGTATATTCATGCTTCAAGAATTAAAGTCATTGGGATGGAGAAAGAAATTATGGCCTGAATACGAATACTGCCATTTTGACGAAGATCGGTTTTCAATTTGGGTGGCAGGTTAGACATTGAACATCAGAGATACAAGGAAAAATAATCACCAATACTATGGTTAAAATTCTTATAGAAATTTTATGTACAGGCTCACTGGCATCTTATTTTCTCCCTTGAACGCCTTGCGCACACTTATCAAAATAAAATAAAAAAAATAGGCAGCTGCTACTGCTAGTATACATACTGTACAAATATAGCGAGTTTGATACTTGGATAACATCATTGTTCTAAGTTGTACCATATGACTTCCTTCGATTTATTTGGAATTCTTGGAACCCTCCGTCGTAGCCCCATAATTCTTAGTCAGATATGATTTTGGGCTTGAATATTACGAAATCAATGAATTAAATTTATA
Coding sequences of Glyma.17g065600
>Glyma.17g065600.1 sequence-type=CDS polypeptide=Glyma.17g065600.1.p locus=Glyma.17g065600 ID=Glyma.17g065600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCCGGCACAAGAAGGGTTTCGTCCGATACACACTCTCTCTCCGTCGAAATGGCCGCTTCTTCTTCCTCTCCCGACGAGCCTTCTCGCTCCGTCTTCCTCGGCGTCGACGTCGGCACCGGCAGCGCTCGTGCAGGTCTATTTGACGAGGAAGGAAAGCTTCTTGGTTCATCTAGCAGCTCAATACAAATATGGAAAGACGGTGCCTGTGTTGAGCAATCCTCTACAGATATATGGCTTGCAGTTTGTGCAGCTGTAAAAGCAGCTTGCTCTAAAGCTGAAGTTGCACCAACAGAAGTAAAGGGTATGGGATTTGCTGCTACTTGTTCTCTTGTTGCTGTGGATTCCGACAGCTCACCTGTTTCAGTTTCTTGGAGTGGTGATTCAAGAAGAAATGTGATTGTATGGATGGATCATAGAGCTGTAGAACAAGCCGAAAGGATCAATTCCTCTAAATCACCTGTATTGGAGTACTGTGGTGGAGCTGTTTCACCTGAAATGGAGCCACCAAAGCTTCTATGGGTTAAAGAAAATTTGCAAGAATCTTGGTCAATGGTTTTCAGGTGGATGGACTTAAGCGATTGGTTGTCATACAGGGCAACCGGTGATGATACTCGCAGTCTATGCACCACAGTTTGTAAATGGACATATCTGGGTCATGCACACATGCAGCATGTCAATGATAAAGAGTCTCGAGACATGGAAGCTTGTGGATGGGATGATGATTTTTGGGAGGAAATTGGTTTGGGTGATCTTATTGAAGGACATCATGCGAAGATAGGACGAAGTGTTGCTTTCCCTGGCCATCCTTTGGGTTCTGGCCTTACTCCTACTGCAGCAAAGGAACTGGGTCTGGTACCAGGAATTCCTGTTGGGACATCATTAATTGATGCTCATGCTGGTGGCGTGGGGGTAATTGAAAGTGTGCCACCATCAGAAGCTGAAGAACATGACATGGAAGCAATTTGCAACCGTATGGTGTTAGTTTGTGGAACTTCTACATGCCATATGGCTGTATCGCGGAGCAAATTGTTCATACCTGGGGTTTGGGGTCCATTTTGGTCAGCAATGGTACCAGAATATTGGCTAACGGAAGGTGGGCAGAGTGCTACTGGTGCATTATTGGATCATATAATTGAAAACCATGCTGCTTCTGCACGCCTTGCAAATCAAGCTGCTACCCAAAAGATTTCATTGTTTGAGCTTCTGAACAAGATGTTGGAAACAATGATAGTTGAGCTGAACCTATCCTTTATTGCTGCCTTGACTGAAGATGTACATGTTCTTCCTGACTTCCATGGGAATAGGTCACCCATTGCAGATCCAAAAGCAAAAGGAGTCATCTATGGTTTGACACTTGACACAAGTGACAAACAGTTGGCTCTTCTTTACCTGGCTACTGTGCAGGGCATTGCATATGGCACACGTCACATTGTAGAGCATTGCAATGCTCATGGTCACAAAATAAACACACTACTTGCATGTGGCGGCCTTTCAAAGAATCCTATCTTCATGCAGGAACATGCTGATATTATTGGTTGCCCTATAATTCTTCCAAGGGAAAGTGAATCTGTGCTCTTGGGTGCTGCTATTCTGGGTGCCGTTGCTACAAGAAAATATCATAGCCTTAGCGAGGCCATGAAAGCCCTGAATGCAGCTGGCCAGGTCATTCATCCATCTAAGGATCCAAAGGTAAAAAAGTACCATGATGCCAAATACAAGATCTTCCGTGGCCTTTATGAACAGCAGTTCTCATATCGTTCTACGATGGCCCAAGCCTTGTCATAG

>Glyma.17g065600.2 sequence-type=CDS polypeptide=Glyma.17g065600.2.p locus=Glyma.17g065600 ID=Glyma.17g065600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCCGGCACAAGAAGGGTTTCGTCCGATACACACTCTCTCTCCGTCGAAATGGCCGCTTCTTCTTCCTCTCCCGACGAGCCTTCTCGCTCCGTCTTCCTCGGCGTCGACGTCGGCACCGGCAGCGCTCGTGCAGGTCTATTTGACGAGGAAGGAAAGCTTCTTGGTTCATCTAGCAGCTCAATACAAATATGGAAAGACGGTGCCTGTGTTGAGCAATCCTCTACAGATATATGGCTTGCAGTTTGTGCAGCTGTAAAAGCAGCTTGCTCTAAAGCTGAAGTTGCACCAACAGAAGTAAAGGGTATGGGATTTGCTGCTACTTGTTCTCTTGTTGCTGTGGATTCCGACAGCTCACCTGTTTCAGTTTCTTGGAGTGGTGATTCAAGAAGAAATGTGATTGTATGGATGGATCATAGAGCTGTAGAACAAGCCGAAAGGATCAATTCCTCTAAATCACCTGTATTGGAGTACTGTGGTGGAGCTGTTTCACCTGAAATGGAGCCACCAAAGCTTCTATGGGTTAAAGAAAATTTGCAAGAATCTTGGTCAATGGTTTTCAGGTGGATGGACTTAAGCGATTGGTTGTCATACAGGGCAACCGGTGATGATACTCGCAGTCTATGCACCACAGTTTGTAAATGGACATATCTGGGTCATGCACACATGCAGCATGTCAATGATAAAGAGTCTCGAGACATGGAAGCTTGTGGATGGGATGATGATTTTTGGGAGGAAATTGGTTTGGGTGATCTTATTGAAGGACATCATGCGAAGATAGGACGAAGTGTTGCTTTCCCTGGCCATCCTTTGGGTTCTGGCCTTACTCCTACTGCAGCAAAGGAACTGGGTCTGGTACCAGGAATTCCTGTTGGGACATCATTAATTGATGCTCATGCTGGTGGCGTGGGGGTAATTGAAAGTGTGCCACCATCAGAAGCTGAAGAACATGACATGGAAGCAATTTGCAACCGTATGGTGTTAGTTTGTGGAACTTCTACATGCCATATGGCTGTATCGCGGAGCAAATTGTTCATACCTGGGGTTTGGGGTCCATTTTGGTCAGCAATGGTACCAGAATATTGGCTAACGGAAGGTGGGCAGAGTGCTACTGGTGCATTATTGGATCATATAATTGAAAACCATGCTGCTTCTGCACGCCTTGCAAATCAAGCTGCTACCCAAAAGATTTCATTGTTTGAGCTTCTGAACAAGATGTTGGAAACAATGATAGTTGAGCTGAACCTATCCTTTATTGCTGCCTTGACTGAAGATGTACATGTTCTTCCTGACTTCCATGGGAATAGGTCACCCATTGCAGATCCAAAAGCAAAAGGAGTCATCTATGGTTTGACACTTGACACAAGTGACAAACAGTTGGCTCTTCTTTACCTGGCTACTGTGCAGGGCATTGCATATGGCACACGTCACATTGTAGAGCATTGCAATGCTCATGGTCACAAAATAAACACACTACTTGCATGTGGCGGCCTTTCAAAGAATCCTATCTTCATGCAGGAACATGCTGATATTATTGGTATGTGTTGA
Predicted protein sequences of Glyma.17g065600
>Glyma.17g065600.1.p sequence-type=predicted peptide transcript=Glyma.17g065600.1 locus=Glyma.17g065600 ID=Glyma.17g065600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSGTRRVSSDTHSLSVEMAASSSSPDEPSRSVFLGVDVGTGSARAGLFDEEGKLLGSSSSSIQIWKDGACVEQSSTDIWLAVCAAVKAACSKAEVAPTEVKGMGFAATCSLVAVDSDSSPVSVSWSGDSRRNVIVWMDHRAVEQAERINSSKSPVLEYCGGAVSPEMEPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQHVNDKESRDMEACGWDDDFWEEIGLGDLIEGHHAKIGRSVAFPGHPLGSGLTPTAAKELGLVPGIPVGTSLIDAHAGGVGVIESVPPSEAEEHDMEAICNRMVLVCGTSTCHMAVSRSKLFIPGVWGPFWSAMVPEYWLTEGGQSATGALLDHIIENHAASARLANQAATQKISLFELLNKMLETMIVELNLSFIAALTEDVHVLPDFHGNRSPIADPKAKGVIYGLTLDTSDKQLALLYLATVQGIAYGTRHIVEHCNAHGHKINTLLACGGLSKNPIFMQEHADIIGCPIILPRESESVLLGAAILGAVATRKYHSLSEAMKALNAAGQVIHPSKDPKVKKYHDAKYKIFRGLYEQQFSYRSTMAQALS*

>Glyma.17g065600.2.p sequence-type=predicted peptide transcript=Glyma.17g065600.2 locus=Glyma.17g065600 ID=Glyma.17g065600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSGTRRVSSDTHSLSVEMAASSSSPDEPSRSVFLGVDVGTGSARAGLFDEEGKLLGSSSSSIQIWKDGACVEQSSTDIWLAVCAAVKAACSKAEVAPTEVKGMGFAATCSLVAVDSDSSPVSVSWSGDSRRNVIVWMDHRAVEQAERINSSKSPVLEYCGGAVSPEMEPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQHVNDKESRDMEACGWDDDFWEEIGLGDLIEGHHAKIGRSVAFPGHPLGSGLTPTAAKELGLVPGIPVGTSLIDAHAGGVGVIESVPPSEAEEHDMEAICNRMVLVCGTSTCHMAVSRSKLFIPGVWGPFWSAMVPEYWLTEGGQSATGALLDHIIENHAASARLANQAATQKISLFELLNKMLETMIVELNLSFIAALTEDVHVLPDFHGNRSPIADPKAKGVIYGLTLDTSDKQLALLYLATVQGIAYGTRHIVEHCNAHGHKINTLLACGGLSKNPIFMQEHADIIGMC*






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