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Report for Sequence Feature Glyma.17g063200

Feature Type:gene_model
Chromosome:Gm17
Start:4871508
stop:4872322
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g063200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G28740.1AT histone H4 JGI N/AIEA
GO:0006334GO-bp nucleosome assembly EnsemblGenomesN/AIEA
GO:0006352GO-bp DNA-templated transcription, initiation JGI N/AIEA
GO:0009414GO-bp response to water deprivation EnsemblGenomesN/AIEA
GO:0000786GO-cc nucleosome EnsemblGenomesN/AIEA
GO:0000788GO-cc nuclear nucleosome EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0005694GO-cc chromosome EnsemblGenomesN/AIEA
GO:0005730GO-cc nucleolus EnsemblGenomesN/AIEA
GO:0005774GO-cc vacuolar membrane EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0005886GO-cc plasma membrane EnsemblGenomesN/AIEA
GO:0009506GO-cc plasmodesma EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009579GO-cc thylakoid EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0042393GO-mf histone binding EnsemblGenomesN/AIEA
GO:0046982GO-mf protein heterodimerization activity EnsemblGenomesN/AIEA
KOG3467 KOG Histone H4 JGI N/AIEA
PTHR10484Panther HISTONE H4 JGI N/AIEA
PF00125PFAM Core histone H2A/H2B/H3/H4 JGI N/AIEA

Expression Patterns of Glyma.17g063200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g063200 not represented in the dataset
Glyma.17g063200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g063200
ParalogEvidenceComments
Glyma.20g083800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g063200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g07070 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g063200
>Glyma.17g063200.1 sequence-type=CDS polypeptide=Glyma.17g063200.1.p locus=Glyma.17g063200 ID=Glyma.17g063200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTGGAAGAGGAAAGGGAGGCAAGGGTCTCGGAAAGGGAGGAGCCAAACGACACCGTAAGGTTCTGAGGGATAACATTCAGGGAATCACCAAGCCCGCGATTCGCCGTCTGGCCAGACGTGGTGGCGTCAAGCGTATCAGTGGTCTTATCTATGAAGAAACTCGCGGTGTTCTCAAGATCTTTCTAGAGAACGTCATTCGTGACGCTGTCACCTACACTGAACACGCTCGCCGCAAGACCGTCACTGCCATGGACGTTGTTTACGCCCTCAAGAGGCAGGGGAGGACCCTTTACGGATTTGGCGGTTAG
Predicted protein sequences of Glyma.17g063200
>Glyma.17g063200.1.p sequence-type=predicted peptide transcript=Glyma.17g063200.1 locus=Glyma.17g063200 ID=Glyma.17g063200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG*






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