SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.17g063100

Feature Type:gene_model
Chromosome:Gm17
Start:4865292
stop:4866821
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g063100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G30220.1AT small nuclear ribonucleoprotein F JGI N/AIEA
GO:0000387GO-bp spliceosomal snRNP assembly EnsemblGenomesN/AIEA
GO:0000398GO-bp mRNA splicing, via spliceosome EnsemblGenomesN/AIEA
GO:0006397GO-bp mRNA processing EnsemblGenomesN/AIEA
GO:0008380GO-bp RNA splicing EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005681GO-cc spliceosomal complex EnsemblGenomesN/AIEA
GO:0005685GO-cc U1 snRNP EnsemblGenomesN/AIEA
GO:0005732GO-cc small nucleolar ribonucleoprotein complex EnsemblGenomesN/AIEA
GO:0071013GO-cc catalytic step 2 spliceosome EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
KOG3482 KOG Small nuclear ribonucleoprotein (snRNP) SMF JGI N/AIEA
PTHR11021Panther SMALL NUCLEAR RIBONUCLEOPROTEIN F (SNRNP-F) JGI N/AIEA
PF01423PFAM LSM domain JGI N/AIEA

Expression Patterns of Glyma.17g063100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g063100
ParalogEvidenceComments
Glyma.20g084000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g063100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g07060 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g063100
>Glyma.17g063100.1 sequence-type=CDS polypeptide=Glyma.17g063100.1.p locus=Glyma.17g063100 ID=Glyma.17g063100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGGGCTATCTCGTTTCCGTTGATTCCTATATGAACTTGCAGCTGGCCAACACCGAGGAGTACATTGAGGGACAATTTACTGGAAATTTGGGAGAGATTTTAATCAGAAATGACCGTAAGAATCAATGTCATTGTGTCACTGCTTAA
Predicted protein sequences of Glyma.17g063100
>Glyma.17g063100.1.p sequence-type=predicted peptide transcript=Glyma.17g063100.1 locus=Glyma.17g063100 ID=Glyma.17g063100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGEILIRNDRKNQCHCVTA*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo