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Report for Sequence Feature Glyma.17g062400

Feature Type:gene_model
Chromosome:Gm17
Start:4779896
stop:4782921
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g062400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G57370.1AT JGI N/AIEA
GO:0008380GO-bp RNA splicing EnsemblGenomesN/AIEA
GO:0071011GO-cc precatalytic spliceosome EnsemblGenomesN/AIEA
PF08648PFAM Protein of unknown function (DUF1777) JGI N/AIEA

Expression Patterns of Glyma.17g062400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g062400
ParalogEvidenceComments
Glyma.13g097200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g062400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g06990 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.17g062400
>Glyma.17g062400.2 sequence-type=transcript locus=Glyma.17g062400 ID=Glyma.17g062400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATAGGGTTTAGAACCATGACTTGAACCTCTATCTCCTTCTCCACCATCACACCTTCCACCATGACcgatcgtgaccgcgaccgagaccgtgaccgaactcgcgacAGAGAAAGAGAACGAAGAAGAGATAAGGACGATCGTGACCGAGACAGAGACCGAGCACGCAGCAAGAGATCTCGCTCGCGTTCGCCTGACCGTGGccgctcccgccacgcgcgctctccctctcccagcgagcgctcccACCGCCGGCGGCATCACCGGACGCCGTCCCCCGACCCGCCGCGGAAGCGCCACCGGAGAGACTCGGCGGAGGAGGATCACAAGGAGACGAAGAAAGCGGTGTCGGACTTCGTGGACGGCATCGTGAaggagcagcagcagaaggagaacggagacggaggagaaggagaagctgaggggagcgaggatgagttggagaTAATGAAGATGTTTGGGATTCCCACCGGATTTGACTCCACCAAGGGGAAACCGGTTCCCGGTGCTGACGTCAGCGGCGTCAGAGCCGTCACCAAGCGCCAGCCGCGCCAGTACATGAACCGCCGCGGCGGATTTAATCGCCCATTGCCTGCTGAGAGGAATCGCTAGGGTTTTCTTTTTTTCAGACGAGTAATTTCCTTTGGTGGTAGACGGTGGTTAATCATGTGGAATGTTGGATCCAGAAACCCTTGGTGGGACCCAAAATGAAAGCTCGCGAGCGTTCCACCAGTTACTTGTGTCGTTCATTTAATACCCCGTGCTACCTTCAGCTCAATATATCCTGCGTAATTGGTGTTAGGCGTGCTTTTATTTTTTTATCCATCTACTAATTGTCTAGTTACATTCATAGAATTTGTCAAATTTTCATGCGGTATGTACATTTAGCTGCACGCCTTACGCCTTGGGAATTGGGATGCACATGCTTTATGTAATCAAGTGATTCTGGATTTCAATATCATGCATGGCCAATATCCGTGCGAGTTTGTTAACTCTGTCCTAAACTACTAGTTTTAATGCTACTAGTATATCTATGCTGATACGCATTTAATGT
Coding sequences of Glyma.17g062400
>Glyma.17g062400.1 sequence-type=CDS polypeptide=Glyma.17g062400.1.p locus=Glyma.17g062400 ID=Glyma.17g062400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACCGATCGTGACCGCGACCGAGACCGTGACCGAACTCGCGACAGAGAAAGAGAACGAAGAAGAGATAAGGACGATCGTGACCGAGACAGAGACCGAGCACGCAGCAAGAGATCTCGCTCGCGTTCGCCTGACCGTGGCCGCTCCCGCCACGCGCGCTCTCCCTCTCCCAGCGAGCGCTCCCACCGCCGGCGGCATCACCGGACGCCGTCCCCCGACCCGCCGCGGAAGCGCCACCGGAGAGACTCGGCGGAGGAGGATCACAAGGAGACGAAGAAAGCGGTGTCGGACTTCGTGGACGGCATCGTGAAGGAGCAGCAGCAGAAGGAGAACGGAGACGGAGGAGAAGGAGAAGCTGAGGGGAGCGAGGATGAGTTGGAGATAATGAAGATGTTTGGGATTCCCACCGGATTTGACTCCACCAAGGGGAAACCGGTTCCCGGTGCTGACGTCAGCGGCGTCAGAGCCGTCACCAAGCGCCAGCCGCGCCAGTACATGAACCGCCGCGGCGGATTTAATCGCCCATTGCCTGCTGAGAGGAATCGCTAG

>Glyma.17g062400.2 sequence-type=CDS polypeptide=Glyma.17g062400.2.p locus=Glyma.17g062400 ID=Glyma.17g062400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACCGATCGTGACCGCGACCGAGACCGTGACCGAACTCGCGACAGAGAAAGAGAACGAAGAAGAGATAAGGACGATCGTGACCGAGACAGAGACCGAGCACGCAGCAAGAGATCTCGCTCGCGTTCGCCTGACCGTGGCCGCTCCCGCCACGCGCGCTCTCCCTCTCCCAGCGAGCGCTCCCACCGCCGGCGGCATCACCGGACGCCGTCCCCCGACCCGCCGCGGAAGCGCCACCGGAGAGACTCGGCGGAGGAGGATCACAAGGAGACGAAGAAAGCGGTGTCGGACTTCGTGGACGGCATCGTGAAGGAGCAGCAGCAGAAGGAGAACGGAGACGGAGGAGAAGGAGAAGCTGAGGGGAGCGAGGATGAGTTGGAGATAATGAAGATGTTTGGGATTCCCACCGGATTTGACTCCACCAAGGGGAAACCGGTTCCCGGTGCTGACGTCAGCGGCGTCAGAGCCGTCACCAAGCGCCAGCCGCGCCAGTACATGAACCGCCGCGGCGGATTTAATCGCCCATTGCCTGCTGAGAGGAATCGCTAG
Predicted protein sequences of Glyma.17g062400
>Glyma.17g062400.1.p sequence-type=predicted peptide transcript=Glyma.17g062400.1 locus=Glyma.17g062400 ID=Glyma.17g062400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTDRDRDRDRDRTRDRERERRRDKDDRDRDRDRARSKRSRSRSPDRGRSRHARSPSPSERSHRRRHHRTPSPDPPRKRHRRDSAEEDHKETKKAVSDFVDGIVKEQQQKENGDGGEGEAEGSEDELEIMKMFGIPTGFDSTKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERNR*

>Glyma.17g062400.2.p sequence-type=predicted peptide transcript=Glyma.17g062400.2 locus=Glyma.17g062400 ID=Glyma.17g062400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTDRDRDRDRDRTRDRERERRRDKDDRDRDRDRARSKRSRSRSPDRGRSRHARSPSPSERSHRRRHHRTPSPDPPRKRHRRDSAEEDHKETKKAVSDFVDGIVKEQQQKENGDGGEGEAEGSEDELEIMKMFGIPTGFDSTKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERNR*






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