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Report for Sequence Feature Glyma.17g060900

Feature Type:gene_model
Chromosome:Gm17
Start:4641297
stop:4644835
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g060900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G57280.1AT S-adenosyl-L-methionine-dependent methyltransferases superfamily protein JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0032259GO-bp methylation EnsemblGenomesN/AIEA
GO:0070476GO-bp rRNA (guanine-N7)-methylation EnsemblGenomesN/AIEA
GO:0005730GO-cc nucleolus EnsemblGenomesN/AIEA
GO:0008168GO-mf methyltransferase activity EnsemblGenomesN/AIEA
GO:0008168GO-mf methyltransferase activity JGI N/AIEA
GO:0016435GO-mf rRNA (guanine) methyltransferase activity EnsemblGenomesN/AIEA
KOG1541 KOG Predicted protein carboxyl methylase JGI N/AIEA
PTHR12734Panther METHYLTRANSFERASE-RELATED JGI N/AIEA
PF08241PFAM Methyltransferase domain JGI N/AIEA
PF12589PFAM Methyltransferase involved in Williams-Beuren syndrome JGI N/AIEA
GN7V-66468SoyCyc9-rxn malonyl-CoA O-methyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.17g060900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g060900 not represented in the dataset
Glyma.17g060900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g060900
ParalogEvidenceComments
Glyma.13g099200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g060900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g06840 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.17g060900
>Glyma.17g060900.2 sequence-type=transcript locus=Glyma.17g060900 ID=Glyma.17g060900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTGTGTGTGGGTTTTAGGGTTTTTGTCGCTGTGAAAGGATGGCGTCGAGACCAGAGGTGATTGCGCCGCCTGAGATTTTCTACGACGATGCCGAAGCTCGCAAGTACACCTCTTCTTCCCGTATTGTTCAAATTCAGGCGACGCTGTCAGAGAGAGCTCTTGAACTACTTGCTTTGCCTGATGACGGCGTTCCTAAATTACTCCTTGATATCGGTTGTGGATCGGGACTTAGCGGTGAGACAATCTCGGAGAATGGACACCATTGGATTGGGCTTGATATTTCAGCATCAATGCTTAATGTTGCGGTGGAGCGAGAGGTTGAGGGTGACCTTTTACTTGGTGACATGGGCCAGGGTATAGGAATTCGTCCTGGAGTTATGGATGGGGCCATCAGTATATCTGCTGTTCAGTGGTTATGCAATGCTGATAAATCCTCTCACAACCCTCGATTAAGATTGAAGGCCTTTTTTACATCTCTATATAAATGCTTATCAAATGGAGCTAGAGCAGTATTTCAAGTGTATCCTGAAAATATAGACCAACGTGAATTGATTTTGAATGCTGCAATGCATGCTGGATTTGCTGGTGGTATAGTGGTGGATTTTCCACACAGTTCTAAGAAGAGGAAGGAGTTCCTTGTTCTCACTTGTGGTCAATGCTCAGTAAATGCGTCCATTTCCAAAGGTAAAAATGAAGATGGGGAGAGTTGCTCTGATGACGACAGTGAAGATGAAGAAAATCAGACATTGGTTGTATTCTTTGATTGCTACCTATAATCCAGATTTTGGAAATGCAAGATGTAGGCAAGTTATGTAAATGCC
Coding sequences of Glyma.17g060900
>Glyma.17g060900.1 sequence-type=CDS polypeptide=Glyma.17g060900.1.p locus=Glyma.17g060900 ID=Glyma.17g060900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTCGAGACCAGAGGTGATTGCGCCGCCTGAGATTTTCTACGACGATGCCGAAGCTCGCAAGTACACCTCTTCTTCCCGTATTGTTCAAATTCAGGCGACGCTGTCAGAGAGAGCTCTTGAACTACTTGCTTTGCCTGATGACGGCGTTCCTAAATTACTCCTTGATATCGGTTGTGGATCGGGACTTAGCGGTGAGACAATCTCGGAGAATGGACACCATTGGATTGGGCTTGATATTTCAGCATCAATGCTTAATGTTGCGGTGGAGCGAGAGGTTGAGGGTGACCTTTTACTTGGTGACATGGGCCAGGGTATAGGAATTCGTCCTGGAGTTATGGATGGGGCCATCAGTATATCTGCTGTTCAGTGGTTATGCAATGCTGATAAATCCTCTCACAACCCTCGATTAAGATTGAAGGCCTTTTTTACATCTCTATATAAATGCTTATCAAATGGAGCTAGAGCAGTATTTCAAGTGTATCCTGAAAATATAGACCAACGTGAATTGATTTTGAATGCTGCAATGCATGCTGGATTTGCTGGTGGTATAGTGGTGGATTTTCCACACAGTTCTAAGAAGAGGAAGGAGTTCCTTGTTCTCACTTGTGGTCAATGCTCAGTAAATGCGTCCATTTCCAAAGGTAAAAATGAAGATGGGGAGAGTTGCTCTGATGACGACAGTGAAGATGAAGAAAATCAGACAGTATGTATATCAGACAGGCATAGACCGCGGAAGAAACAGAAAAATAATAAGGTTGGTAAAGGAAAGGAATGGTTACTAAGGAAGAAGGAGCAGATGAGAAGAAGAGGAAATGTTGTTCCTCCAAATACCAAGTACACGGGTAGGAAACGGAAGGATCGTTTTTGA

>Glyma.17g060900.2 sequence-type=CDS polypeptide=Glyma.17g060900.2.p locus=Glyma.17g060900 ID=Glyma.17g060900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTCGAGACCAGAGGTGATTGCGCCGCCTGAGATTTTCTACGACGATGCCGAAGCTCGCAAGTACACCTCTTCTTCCCGTATTGTTCAAATTCAGGCGACGCTGTCAGAGAGAGCTCTTGAACTACTTGCTTTGCCTGATGACGGCGTTCCTAAATTACTCCTTGATATCGGTTGTGGATCGGGACTTAGCGGTGAGACAATCTCGGAGAATGGACACCATTGGATTGGGCTTGATATTTCAGCATCAATGCTTAATGTTGCGGTGGAGCGAGAGGTTGAGGGTGACCTTTTACTTGGTGACATGGGCCAGGGTATAGGAATTCGTCCTGGAGTTATGGATGGGGCCATCAGTATATCTGCTGTTCAGTGGTTATGCAATGCTGATAAATCCTCTCACAACCCTCGATTAAGATTGAAGGCCTTTTTTACATCTCTATATAAATGCTTATCAAATGGAGCTAGAGCAGTATTTCAAGTGTATCCTGAAAATATAGACCAACGTGAATTGATTTTGAATGCTGCAATGCATGCTGGATTTGCTGGTGGTATAGTGGTGGATTTTCCACACAGTTCTAAGAAGAGGAAGGAGTTCCTTGTTCTCACTTGTGGTCAATGCTCAGTAAATGCGTCCATTTCCAAAGGTAAAAATGAAGATGGGGAGAGTTGCTCTGATGACGACAGTGAAGATGAAGAAAATCAGACATTGGTTGTATTCTTTGATTGCTACCTATAA
Predicted protein sequences of Glyma.17g060900
>Glyma.17g060900.1.p sequence-type=predicted peptide transcript=Glyma.17g060900.1 locus=Glyma.17g060900 ID=Glyma.17g060900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASRPEVIAPPEIFYDDAEARKYTSSSRIVQIQATLSERALELLALPDDGVPKLLLDIGCGSGLSGETISENGHHWIGLDISASMLNVAVEREVEGDLLLGDMGQGIGIRPGVMDGAISISAVQWLCNADKSSHNPRLRLKAFFTSLYKCLSNGARAVFQVYPENIDQRELILNAAMHAGFAGGIVVDFPHSSKKRKEFLVLTCGQCSVNASISKGKNEDGESCSDDDSEDEENQTVCISDRHRPRKKQKNNKVGKGKEWLLRKKEQMRRRGNVVPPNTKYTGRKRKDRF*

>Glyma.17g060900.2.p sequence-type=predicted peptide transcript=Glyma.17g060900.2 locus=Glyma.17g060900 ID=Glyma.17g060900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASRPEVIAPPEIFYDDAEARKYTSSSRIVQIQATLSERALELLALPDDGVPKLLLDIGCGSGLSGETISENGHHWIGLDISASMLNVAVEREVEGDLLLGDMGQGIGIRPGVMDGAISISAVQWLCNADKSSHNPRLRLKAFFTSLYKCLSNGARAVFQVYPENIDQRELILNAAMHAGFAGGIVVDFPHSSKKRKEFLVLTCGQCSVNASISKGKNEDGESCSDDDSEDEENQTLVVFFDCYL*






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