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Report for Sequence Feature Glyma.17g059300

Feature Type:gene_model
Chromosome:Gm17
Start:4493279
stop:4500352
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g059300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G48175.1AT Cytidine/deoxycytidylate deaminase family protein JGI N/AIEA
GO:0009451GO-bp RNA modification EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity JGI N/AIEA
GO:0019239GO-mf deaminase activity EnsemblGenomesN/AIEA
KOG1018 KOG Cytosine deaminase FCY1 and related enzymes JGI N/AIEA
PTHR11079Panther CYTOSINE DEAMINASE JGI N/AIEA
PTHR11079:SF9Panther CMP/DCMP DEAMINASE, ZINC-BINDING DOMAIN-CONTAINING PROTEIN JGI N/AIEA
PF00383PFAM Cytidine and deoxycytidylate deaminase zinc-binding region JGI N/AIEA

Expression Patterns of Glyma.17g059300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g059300 not represented in the dataset
Glyma.17g059300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g059300
ParalogEvidenceComments
Glyma.13g100600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g059300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g06680 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.17g059300
>Glyma.17g059300.2 sequence-type=transcript locus=Glyma.17g059300 ID=Glyma.17g059300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GACAATCAACTACACCGCACCACCGCCACATCACTGCAACCACTAGCGACATTGAATGAAGACAACGACAACAACATCAAAGTGCAACGATCGGTACACCTTTTTTCAGATATAGAAAAAAACCGCAAACTGGTACATTAATCTGTACCTTCAGCACTGTAAATATGAGACCAGATGCatcatgcatggtgtagATGTCCTCACCCGAAACCCTTACATTCATGGAGCTCGCCATACAACAGGCAAAGTTAGCTTTGGATGTTCTTGAAGTGCCTGTTGGGTAAGTTTCCTTCACAATTTCATACTATTTATTTGAACACTTCATTGGAGCATTATTGCTGCTATGCTTTACTCTCTTTATGCCACCTATTGTATTTGTTGCCAGATGTGTAATTGTTGAGGATGACAAGGTTATAGCCTCAGGCAGGAATCGAACTACCCAGACACGAAATGCTACAAGGCATGCAGAAATGGAAGCTGTAGATGTGCTTCTCGGGCAGTGGCAGAAACATGGACTTTCAATGTCTGAAGTTGCTGAAAAATTCTCAAACTGCAGCCTTTATGTTACCTGTGAACCATGCATAATGTGTGCATCTGCTTTATCAATTTTAGGTATAAAGGAAGTATTTTATGGCTGTTCAAATGATAAATTTGGAGGCTGTGGATCGATACTGTCATTGCATTTAAGTAACACCACACCGCTCAATAATGAAGTTTCACCCGGAAAGTGTTTCAAATGTACTGGATGTATAATGGCATCAGAAGCTGTTCTTCTCTTTCGAACATTCTATGAGCAAGGAAATCCCAATGCTCCAAAGCCACACAGGCCTCTAGCACGTCAGGCATGAAGTTTAATTTGTATATAACCAGTTACTGATATGGTTATCAGTCATGGCCTGAGGATCTGTGCTACCGTAGCATTTTGGGCAGGTTGAAGCTGTTATTGAATGCCATACAGGGCTTTTTAATTCGAAAAATCAACTTCATGTATTGATTATTAATGTATGATTTGAAAGATGAATCAGGGGTTGCCGTTTGAAATGAATCTTACTGGATTAAGTTCATGCTAATTGCCAAACGGAATTTAAGCTTTTCAATTTTGTTAAATATTTGTTTTCTGAAGGTGCAGTGAGTTTCCATTTTTTGTATACGCAGTACGTAATTCATAGTTATGTTGATATGGTCTATTCGGGGATTTGCACGTTCAACCTATACT

>Glyma.17g059300.3 sequence-type=transcript locus=Glyma.17g059300 ID=Glyma.17g059300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GACAATCAACTACACCGCACCACCGCCACATCACTGCAACCACTAGCGACATTGAATGAAGACAACGACAACAACATCAAAGTGCAACGATCGGTACACCTTTTTTCAGATATAGAAAAAAACCGCAAACTGGTACATTAATCTGTACCTTCAGCACTGTAAATATGAGACCAGATGCatcatgcatggtgtagATGTCCTCACCCGAAACCCTTACATTCATGGAGCTCGCCATACAACAGGCAAAGTTAGCTTTGGATGTTCTTGAAGTGCCTGTTGGATGTGTAATTGTTGAGGATGACAAGGTTATAGCCTCAGGCAGGAATCGAACTACCCAGACACGAAATGCTACAAGGCATGCAGAAATGGAAGCTGTAGATGTGCTTCTCGGGCAGTGGCAGAAACATGGACTTTCAATGTCTGAAGTTGCTGAAAAATTCTCAAACTGCAGCCTTTATGTTACCTGTGAACCATGCATAATGTGTGCATCTGCTTTATCAATTTTAGGTATAAAGGAAGTATTTTATGGCTGTTCAAATGATAAATTTGGAGGCTGTGGATCGATACTGTCATTGCATTTAAGTAACACCACACCGCTCAATAATGAAGTTTCACCCGGAAAGTGTTTCAAATGTACTGGATGTATAATGGCATCAGAAGCTGTTCTTCTCTTTCGAACATTCTATGAGCAAGGAAATCCCAATGCTCCAAAGCCACACAGGCCTCTAGCACGTCAGGCATGAAGTTTAATTTGTATATAACCAGTTACTGATATGGTTATCAGTCATGGCCTGAGGATCTGTGCTACCGTAGCATTTTGGGCAGGTTGAAGCTGTTATTGAATGCCATACAGGGCTTTTTAATTCGAAAAATCAACTTCATGTATTGATTATTAATGTATGATTTGAAAGATGAATCAGGGGTTGCCGTTTGAAATGAATCTTACTGGATTAAGTTCATGCTAATTGC

>Glyma.17g059300.4 sequence-type=transcript locus=Glyma.17g059300 ID=Glyma.17g059300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATCTTATTGAATACACTTATCTTAAAATTGATTTTTCCCTCTTTGTTCTCAAGATGTCCTCACCCGAAACCCTTACATTCATGGAGCTCGCCATACAACAGGCAAAGTTAGCTTTGGATGTTCTTGAAGTGCCTGTTGGATGTGTAATTGTTGAGGATGACAAGGTTATAGCCTCAGGCAGGAATCGAACTACCCAGACACGAAATGCTACAAGGCATGCAGAAATGGAAGCTGTAGATGTGCTTCTCGGGCAGTGGCAGAAACATGGACTTTCAATGTCTGAAGTTGCTGAAAAATTCTCAAACTGCAGCCTTTATGTTACCTGTGAACCATGCATAATGTGTGCATCTGCTTTATCAATTTTAGGTATAAAGGAAGTATTTTATGGCTGTTCAAATGATAAATTTGGAGGCTGTGGATCGATACTGTCATTGCATTTAAGTAACACCACACCGCTCAATAATTTCACCCGGAAAGTGTTTCAAATGTACTGGATGTATAATGGCATCAGAAGCTGTTCTTCTCTTTCGAACATTCTATGAGCAAGGAAATCCCAATGCTCCAAAGCCACACAGGCCTCTAGCACGTCAGGCATGAAGTTTAATTTGTATATAACCAGTTACTGATATGGTTATCAGTCATGGCCTGAGGATCTGTGCTACCGTAGCATTTTGGGCAGGTTGAAGCTGTTATTGAATGCCATACAGGGCTTTTTAATTCGAAAAATCAACTTCATGTATTGATTATTAATGTATGATTTGAAAGATGAATCAGGGGTTGCCGTTTGAAATGAATCTTACTGGATTAAGTTCATGCTAATTGC
Coding sequences of Glyma.17g059300
>Glyma.17g059300.1 sequence-type=CDS polypeptide=Glyma.17g059300.1.p locus=Glyma.17g059300 ID=Glyma.17g059300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCCTCACCCGAAACCCTTACATTCATGGAGCTCGCCATACAACAGGCAAAGTTAGCTTTGGATGTTCTTGAAGTGCCTGTTGGATGTGTAATTGTTGAGGATGACAAGGTTATAGCCTCAGGCAGGAATCGAACTACCCAGACACGAAATGCTACAAGGCATGCAGAAATGGAAGCTGTAGATGTGCTTCTCGGGCAGTGGCAGAAACATGGACTTTCAATGTCTGAAGTTGCTGAAAAATTCTCAAACTGCAGCCTTTATGTTACCTGTGAACCATGCATAATGTGTGCATCTGCTTTATCAATTTTAGGTATAAAGGAAGTATTTTATGGCTGTTCAAATGATAAATTTGGAGGCTGTGGATCGATACTGTCATTGCATTTAAGTAACACCACACCGCTCAATAATGAAGTTTCACCCGGAAAGTGTTTCAAATGTACTGGATGTATAATGGCATCAGAAGCTGTTCTTCTCTTTCGAACATTCTATGAGCAAGGAAATCCCAATGCTCCAAAGCCACACAGGCCTCTAGCACGTCAGGCATGA

>Glyma.17g059300.2 sequence-type=CDS polypeptide=Glyma.17g059300.2.p locus=Glyma.17g059300 ID=Glyma.17g059300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCACCTATTGTATTTGTTGCCAGATGTGTAATTGTTGAGGATGACAAGGTTATAGCCTCAGGCAGGAATCGAACTACCCAGACACGAAATGCTACAAGGCATGCAGAAATGGAAGCTGTAGATGTGCTTCTCGGGCAGTGGCAGAAACATGGACTTTCAATGTCTGAAGTTGCTGAAAAATTCTCAAACTGCAGCCTTTATGTTACCTGTGAACCATGCATAATGTGTGCATCTGCTTTATCAATTTTAGGTATAAAGGAAGTATTTTATGGCTGTTCAAATGATAAATTTGGAGGCTGTGGATCGATACTGTCATTGCATTTAAGTAACACCACACCGCTCAATAATGAAGTTTCACCCGGAAAGTGTTTCAAATGTACTGGATGTATAATGGCATCAGAAGCTGTTCTTCTCTTTCGAACATTCTATGAGCAAGGAAATCCCAATGCTCCAAAGCCACACAGGCCTCTAGCACGTCAGGCATGA

>Glyma.17g059300.3 sequence-type=CDS polypeptide=Glyma.17g059300.3.p locus=Glyma.17g059300 ID=Glyma.17g059300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCCTCACCCGAAACCCTTACATTCATGGAGCTCGCCATACAACAGGCAAAGTTAGCTTTGGATGTTCTTGAAGTGCCTGTTGGATGTGTAATTGTTGAGGATGACAAGGTTATAGCCTCAGGCAGGAATCGAACTACCCAGACACGAAATGCTACAAGGCATGCAGAAATGGAAGCTGTAGATGTGCTTCTCGGGCAGTGGCAGAAACATGGACTTTCAATGTCTGAAGTTGCTGAAAAATTCTCAAACTGCAGCCTTTATGTTACCTGTGAACCATGCATAATGTGTGCATCTGCTTTATCAATTTTAGGTATAAAGGAAGTATTTTATGGCTGTTCAAATGATAAATTTGGAGGCTGTGGATCGATACTGTCATTGCATTTAAGTAACACCACACCGCTCAATAATGAAGTTTCACCCGGAAAGTGTTTCAAATGTACTGGATGTATAATGGCATCAGAAGCTGTTCTTCTCTTTCGAACATTCTATGAGCAAGGAAATCCCAATGCTCCAAAGCCACACAGGCCTCTAGCACGTCAGGCATGA

>Glyma.17g059300.4 sequence-type=CDS polypeptide=Glyma.17g059300.4.p locus=Glyma.17g059300 ID=Glyma.17g059300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCCTCACCCGAAACCCTTACATTCATGGAGCTCGCCATACAACAGGCAAAGTTAGCTTTGGATGTTCTTGAAGTGCCTGTTGGATGTGTAATTGTTGAGGATGACAAGGTTATAGCCTCAGGCAGGAATCGAACTACCCAGACACGAAATGCTACAAGGCATGCAGAAATGGAAGCTGTAGATGTGCTTCTCGGGCAGTGGCAGAAACATGGACTTTCAATGTCTGAAGTTGCTGAAAAATTCTCAAACTGCAGCCTTTATGTTACCTGTGAACCATGCATAATGTGTGCATCTGCTTTATCAATTTTAGGTATAAAGGAAGTATTTTATGGCTGTTCAAATGATAAATTTGGAGGCTGTGGATCGATACTGTCATTGCATTTAAGTAACACCACACCGCTCAATAATTTCACCCGGAAAGTGTTTCAAATGTACTGGATGTATAATGGCATCAGAAGCTGTTCTTCTCTTTCGAACATTCTATGA
Predicted protein sequences of Glyma.17g059300
>Glyma.17g059300.1.p sequence-type=predicted peptide transcript=Glyma.17g059300.1 locus=Glyma.17g059300 ID=Glyma.17g059300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSPETLTFMELAIQQAKLALDVLEVPVGCVIVEDDKVIASGRNRTTQTRNATRHAEMEAVDVLLGQWQKHGLSMSEVAEKFSNCSLYVTCEPCIMCASALSILGIKEVFYGCSNDKFGGCGSILSLHLSNTTPLNNEVSPGKCFKCTGCIMASEAVLLFRTFYEQGNPNAPKPHRPLARQA*

>Glyma.17g059300.2.p sequence-type=predicted peptide transcript=Glyma.17g059300.2 locus=Glyma.17g059300 ID=Glyma.17g059300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPPIVFVARCVIVEDDKVIASGRNRTTQTRNATRHAEMEAVDVLLGQWQKHGLSMSEVAEKFSNCSLYVTCEPCIMCASALSILGIKEVFYGCSNDKFGGCGSILSLHLSNTTPLNNEVSPGKCFKCTGCIMASEAVLLFRTFYEQGNPNAPKPHRPLARQA*

>Glyma.17g059300.3.p sequence-type=predicted peptide transcript=Glyma.17g059300.3 locus=Glyma.17g059300 ID=Glyma.17g059300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSPETLTFMELAIQQAKLALDVLEVPVGCVIVEDDKVIASGRNRTTQTRNATRHAEMEAVDVLLGQWQKHGLSMSEVAEKFSNCSLYVTCEPCIMCASALSILGIKEVFYGCSNDKFGGCGSILSLHLSNTTPLNNEVSPGKCFKCTGCIMASEAVLLFRTFYEQGNPNAPKPHRPLARQA*

>Glyma.17g059300.4.p sequence-type=predicted peptide transcript=Glyma.17g059300.4 locus=Glyma.17g059300 ID=Glyma.17g059300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSPETLTFMELAIQQAKLALDVLEVPVGCVIVEDDKVIASGRNRTTQTRNATRHAEMEAVDVLLGQWQKHGLSMSEVAEKFSNCSLYVTCEPCIMCASALSILGIKEVFYGCSNDKFGGCGSILSLHLSNTTPLNNFTRKVFQMYWMYNGIRSCSSLSNIL*






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