Glyma.17g058500

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Report for Sequence Feature Glyma.17g058500

Feature Type:	gene_model
Chromosome:	Gm17
Start:	4445157
stop:	4452670
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.17g058500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G51590.1	AT	alpha-mannosidase 1	JGI	N/A	IEA
GO:0006491	GO-bp	N-glycan processing	EnsemblGenomes	N/A	IEA
GO:0008152	GO-bp	metabolic process	EnsemblGenomes	N/A	IEA
GO:0000139	GO-cc	Golgi membrane	EnsemblGenomes	N/A	IEA
GO:0005783	GO-cc	endoplasmic reticulum	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	JGI	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
GO:0004571	GO-mf	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	EnsemblGenomes	N/A	IEA
GO:0004571	GO-mf	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	JGI	N/A	IEA
GO:0005509	GO-mf	calcium ion binding	EnsemblGenomes	N/A	IEA
GO:0005509	GO-mf	calcium ion binding	JGI	N/A	IEA
GO:0016787	GO-mf	hydrolase activity	EnsemblGenomes	N/A	IEA
GO:0016798	GO-mf	hydrolase activity, acting on glycosyl bonds	EnsemblGenomes	N/A	IEA
KOG2204	KOG	Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases	JGI	N/A	IEA
PTHR11742	Panther	MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED	JGI	N/A	IEA
PF01532	PFAM	Glycosyl hydrolase family 47	JGI	N/A	IEA
GN7V-63311	SoyCyc9-rxn	Man₈GlcNAc₂ isomer 8A_1,2,3B_1,3 1,2-α-mannosidase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.17g058500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g058500 not represented in the dataset	Glyma.17g058500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.17g058500

Paralog	Evidence	Comments
Glyma.13g101200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g058500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma17g06600	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.17g058500

Limit To All Plant Sequences

>Glyma.17g058500.2 sequence-type=transcript locus=Glyma.17g058500 ID=Glyma.17g058500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCCGACATTTATTGCGTGCGTTCTTTACGTTGAGGTTACAACTTACGCATCCTTTTGCACCACCACTTATAACAATACCATTCTCATCTCAACTCTTATTCTTTACCATAATATATGAAATATGCATTGTTAATACTTCATCTTTTTCTCTTAATTACTTTGGTAATTTGTTTCTGGGAGGAATGGGCAAAAAatcttcttcatcatctacatcatctacatcatcTGTATGGAGATATTTGCAACCCCGTTATTACATAAAGAGGCCTAAACGACTGGCATTGGTCCTTATGATTTGTGTATCAATTACATGGCTTTTCTATGATCGCAAATCACTCAATACAGGACACCAGGATGACATTTTGAAATTAAAAGAAGAATTTACTCGCTTGGAAAATACAGTAGAAAATATAAAGGGCCATATGAAAGACTCGACAGAAAGTATCGAAAATGATGAAGCCAATAAATTCACCAAGGATATTTCTGTTGAAGAAGATCCTATCAATATACGACGAAGAGATAAAGTAAAAGATGCCATGCTTCATGCTTGGACATCTTATGAAAAATATGCATGGGGAAAGGATGAACTTAAGCCACAATCTATGAATGGTGTTGACAGTTTTGGCGGTATGGGGGCAACTTTAGTAGATTCACTCGACACATTATTTATAATGGGTCTTGATGCCCAATTCAAAAGAGCTACAGAGTGGGTTGCAGAATCATTGCATTTTCACCAGAACATTGAAGTTAGTGTGTTCGAGACAACCATAAGAGTTCTAGGTGGCCTTCTCAGTGCTTATGATCTCTCTGGTGACAAAGTTTTCCTTGAGAAGGCTAAAGATCTTGCAGATAAGTTATTACCTGCTTGGAATACACCTTCAGGAATCCCCTATAACAGAATTAACTTGGCATATGGCAATACAAATAACCCTACATGGGCGCGGGGAAACAGTATTCTTGCGGATTCTGGTTCAGAGCAACTTGAATTTATTGCTCTCTCTCAAAGGACAAATGACCCCAAGTACAAGGAAAAGGCAGAAAAGGTCATCAAGGAGCTTTATAGAACTTTTCCAGAGGATGGGTTGCTTCCTATATACATTAATCCACTTACTGGAACTAAATCAAGTGGAGCAATTACATTTGGTGCCATGGGTGACAGCTTCTATGAGTATCTACTCAAGGCCTGGATTCTAGGGAACAAGACTGAAGTTGTAACATTTTATAGGGAAATGTGGGAGAAATCAATGAAAGGCCTTCAAAGCATGATTAGGAGGTCAACACCTTCATCTTTTACATACCTAATTGAGAGGCTTGGAAATGCAGACTTTGACAAGATGGATGAATTAGCATGTTTTGTTCCTGGAATGTTGGCTTTGGGATCTTCTAACTATGGCCCTGGAGAAGCTGAAAAATTTCTAGCACTTGGAGAGGAGCTTGCATGGACTTGTTACAATTTCTACCAATTAACACCAACTAAATTGGCAGGAGAGAACTATTACTTTCGCAATGGACAGGATATGAGTGTTGGTACCTCGTGGAATATCCAAAGGCCTGAAACAATTGAGTCTCTATTCTACCTTTGGCGTTTCACTGGAAACAAAACATACCAAGAATGGGGTTGGAATATTTTTCAAGCATTTGAAAACAATTCTCGGATTGAGACAGGATATGTTGGACTCAAAGATGTGAATACTGGTGCAAAAGATAATATGATGCAGAGCTACTTCCTTTCAGAAACACTTAAGTACCTCTATCTCTTGTTTTCTCCTCCATCAGTCATTTCTCTTAACGAATGGGTGTTCAACACAGAGGCACACCCCTTAAGAATTATGACTAGAAGTGCTCATGAAGAGAGTGGTGACCAAGAAGAGATCTTGAAGCATAGTTCCCTACTCTCAACTTAGATCCAAGACTTCAACCTTGTGCTGTGGACACATCATCTTTTACTATCTTTGCATGAGAATGATTCATCATTTTGACTAATGATATTGCTCAGGGGACTGCTGGTTTTGCTTTATCAACAGAGTTATAGGTTGTCTGTCTATGGTGAACAATACTTGGAAGCTTTGTTTATTGGTGTACTTAGTAGGATAAAATGTGGGTGTAAATGCCTAGTTAGAAATAGAGACTATTCTACTTAATTTTTTTACCAACTTTTGCATAATTGTAAATTCTTGTGTATTA

Coding sequences of Glyma.17g058500

Limit To All Plant Sequences

>Glyma.17g058500.1 sequence-type=CDS polypeptide=Glyma.17g058500.1.p locus=Glyma.17g058500 ID=Glyma.17g058500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGCAAAAAATCTTCTTCATCATCTACATCATCTACATCATCTGTATGGAGATATTTGCAACCCCGTTATTACATAAAGAGGCCTAAACGACTGGCATTGGTCCTTATGATTTGTGTATCAATTACATGGCTTTTCTATGATCGCAAATCACTCAATACAGGACACCAGGATGACATTTTGAAATTAAAAGAAGAATTTACTCGCTTGGAAAATACAGTAGAAAATATAAAGGGCCATATGAAAGACTCGACAGAAAGTATCGAAAATGATGAAGCCAATAAATTCACCAAGGATATTTCTGTTGAAGAAGATCCTATCAATATACGACGAAGAGATAAAGTAAAAGATGCCATGCTTCATGCTTGGACATCTTATGAAAAATATGCATGGGGAAAGGATGAACTTAAGCCACAATCTATGAATGGTGTTGACAGTTTTGGCGGTATGGGGGCAACTTTAGTAGATTCACTCGACACATTATTTATAATGGGTCTTGATGCCCAATTCAAAAGAGCTACAGAGTGGGTTGCAGAATCATTGCATTTTCACCAGAACATTGAAGTTAGTGTGTTCGAGACAACCATAAGAGTTCTAGGTGGCCTTCTCAGTGCTTATGATCTCTCTGGTGACAAAGTTTTCCTTGAGAAGGCTAAAGATCTTGCAGATAAGTTATTACCTGCTTGGAATACACCTTCAGGAATCCCCTATAACAGAATTAACTTGGCATATGGCAATACAAATAACCCTACATGGGCGCGGGGAAACAGTATTCTTGCGGATTCTGGTTCAGAGCAACTTGAATTTATTGCTCTCTCTCAAAGGACAAATGACCCCAAGTACAAGGAAAAGGCAGAAAAGGTCATCAAGGAGCTTTATAGAACTTTTCCAGAGGATGGGTTGCTTCCTATATACATTAATCCACTTACTGGAACTAAATCAAGTGGAGCAATTACATTTGGTGCCATGGGTGACAGCTTCTATGAGTATCTACTCAAGGCCTGGATTCTAGGGAACAAGACTGAAGTTGTAACATTTTATAGGGAAATGTGGGAGAAATCAATGAAAGGCCTTCAAAGCATGATTAGGAGGTCAACACCTTCATCTTTTACATACCTAATTGAGAGGCTTGGAAATGCAGACTTTGACAAGATGGATGAATTAGCATGTTTTGTTCCTGGAATGTTGGCTTTGGGATCTTCTAACTATGGCCCTGGAGAAGCTGAAAAATTTCTAGCACTTGGAGAGGAGCTTGCATGGACTTGTTACAATTTCTACCAATTAACACCAACTAAATTGGCAGGAGAGAACTATTACTTTCGCAATGGACAGGATATGAGTGTTGGTACCTCGTGGAATATCCAAAGGCCTGAAACAATTGAGTCTCTATTCTACCTTTGGCGTTTCACTGGAAACAAAACATACCAAGAATGGGGTTGGAATATTTTTCAAGCATTTGAAAACAATTCTCGGATTGAGACAGGATATGTTGGACTCAAAGATGTGAATACTGGTGCAAAAGATAATATGATGCAGAGCTACTTCCTTTCAGAAACACTTAAGTACCTCTATCTCTTGTTTTCTCCTCCATCAGTCATTTCTCTTAACGAATGGGTGTTCAACACAGAGGCACACCCCTTAAGAATTATGACTAGAAGTGCTCATGAAGAGAGTGGTGACCAAGAAGAGGTATTTCCACGTCATTTGCATGGTAGAAAAGAAGGTCGAATTAATTATAAAAAGTAG

>Glyma.17g058500.2 sequence-type=CDS polypeptide=Glyma.17g058500.2.p locus=Glyma.17g058500 ID=Glyma.17g058500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGCAAAAAATCTTCTTCATCATCTACATCATCTACATCATCTGTATGGAGATATTTGCAACCCCGTTATTACATAAAGAGGCCTAAACGACTGGCATTGGTCCTTATGATTTGTGTATCAATTACATGGCTTTTCTATGATCGCAAATCACTCAATACAGGACACCAGGATGACATTTTGAAATTAAAAGAAGAATTTACTCGCTTGGAAAATACAGTAGAAAATATAAAGGGCCATATGAAAGACTCGACAGAAAGTATCGAAAATGATGAAGCCAATAAATTCACCAAGGATATTTCTGTTGAAGAAGATCCTATCAATATACGACGAAGAGATAAAGTAAAAGATGCCATGCTTCATGCTTGGACATCTTATGAAAAATATGCATGGGGAAAGGATGAACTTAAGCCACAATCTATGAATGGTGTTGACAGTTTTGGCGGTATGGGGGCAACTTTAGTAGATTCACTCGACACATTATTTATAATGGGTCTTGATGCCCAATTCAAAAGAGCTACAGAGTGGGTTGCAGAATCATTGCATTTTCACCAGAACATTGAAGTTAGTGTGTTCGAGACAACCATAAGAGTTCTAGGTGGCCTTCTCAGTGCTTATGATCTCTCTGGTGACAAAGTTTTCCTTGAGAAGGCTAAAGATCTTGCAGATAAGTTATTACCTGCTTGGAATACACCTTCAGGAATCCCCTATAACAGAATTAACTTGGCATATGGCAATACAAATAACCCTACATGGGCGCGGGGAAACAGTATTCTTGCGGATTCTGGTTCAGAGCAACTTGAATTTATTGCTCTCTCTCAAAGGACAAATGACCCCAAGTACAAGGAAAAGGCAGAAAAGGTCATCAAGGAGCTTTATAGAACTTTTCCAGAGGATGGGTTGCTTCCTATATACATTAATCCACTTACTGGAACTAAATCAAGTGGAGCAATTACATTTGGTGCCATGGGTGACAGCTTCTATGAGTATCTACTCAAGGCCTGGATTCTAGGGAACAAGACTGAAGTTGTAACATTTTATAGGGAAATGTGGGAGAAATCAATGAAAGGCCTTCAAAGCATGATTAGGAGGTCAACACCTTCATCTTTTACATACCTAATTGAGAGGCTTGGAAATGCAGACTTTGACAAGATGGATGAATTAGCATGTTTTGTTCCTGGAATGTTGGCTTTGGGATCTTCTAACTATGGCCCTGGAGAAGCTGAAAAATTTCTAGCACTTGGAGAGGAGCTTGCATGGACTTGTTACAATTTCTACCAATTAACACCAACTAAATTGGCAGGAGAGAACTATTACTTTCGCAATGGACAGGATATGAGTGTTGGTACCTCGTGGAATATCCAAAGGCCTGAAACAATTGAGTCTCTATTCTACCTTTGGCGTTTCACTGGAAACAAAACATACCAAGAATGGGGTTGGAATATTTTTCAAGCATTTGAAAACAATTCTCGGATTGAGACAGGATATGTTGGACTCAAAGATGTGAATACTGGTGCAAAAGATAATATGATGCAGAGCTACTTCCTTTCAGAAACACTTAAGTACCTCTATCTCTTGTTTTCTCCTCCATCAGTCATTTCTCTTAACGAATGGGTGTTCAACACAGAGGCACACCCCTTAAGAATTATGACTAGAAGTGCTCATGAAGAGAGTGGTGACCAAGAAGAGATCTTGAAGCATAGTTCCCTACTCTCAACTTAG

Predicted protein sequences of Glyma.17g058500

Limit To All Plant Sequences

>Glyma.17g058500.1.p sequence-type=predicted peptide transcript=Glyma.17g058500.1 locus=Glyma.17g058500 ID=Glyma.17g058500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGKKSSSSSTSSTSSVWRYLQPRYYIKRPKRLALVLMICVSITWLFYDRKSLNTGHQDDILKLKEEFTRLENTVENIKGHMKDSTESIENDEANKFTKDISVEEDPINIRRRDKVKDAMLHAWTSYEKYAWGKDELKPQSMNGVDSFGGMGATLVDSLDTLFIMGLDAQFKRATEWVAESLHFHQNIEVSVFETTIRVLGGLLSAYDLSGDKVFLEKAKDLADKLLPAWNTPSGIPYNRINLAYGNTNNPTWARGNSILADSGSEQLEFIALSQRTNDPKYKEKAEKVIKELYRTFPEDGLLPIYINPLTGTKSSGAITFGAMGDSFYEYLLKAWILGNKTEVVTFYREMWEKSMKGLQSMIRRSTPSSFTYLIERLGNADFDKMDELACFVPGMLALGSSNYGPGEAEKFLALGEELAWTCYNFYQLTPTKLAGENYYFRNGQDMSVGTSWNIQRPETIESLFYLWRFTGNKTYQEWGWNIFQAFENNSRIETGYVGLKDVNTGAKDNMMQSYFLSETLKYLYLLFSPPSVISLNEWVFNTEAHPLRIMTRSAHEESGDQEEVFPRHLHGRKEGRINYKK*

>Glyma.17g058500.2.p sequence-type=predicted peptide transcript=Glyma.17g058500.2 locus=Glyma.17g058500 ID=Glyma.17g058500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGKKSSSSSTSSTSSVWRYLQPRYYIKRPKRLALVLMICVSITWLFYDRKSLNTGHQDDILKLKEEFTRLENTVENIKGHMKDSTESIENDEANKFTKDISVEEDPINIRRRDKVKDAMLHAWTSYEKYAWGKDELKPQSMNGVDSFGGMGATLVDSLDTLFIMGLDAQFKRATEWVAESLHFHQNIEVSVFETTIRVLGGLLSAYDLSGDKVFLEKAKDLADKLLPAWNTPSGIPYNRINLAYGNTNNPTWARGNSILADSGSEQLEFIALSQRTNDPKYKEKAEKVIKELYRTFPEDGLLPIYINPLTGTKSSGAITFGAMGDSFYEYLLKAWILGNKTEVVTFYREMWEKSMKGLQSMIRRSTPSSFTYLIERLGNADFDKMDELACFVPGMLALGSSNYGPGEAEKFLALGEELAWTCYNFYQLTPTKLAGENYYFRNGQDMSVGTSWNIQRPETIESLFYLWRFTGNKTYQEWGWNIFQAFENNSRIETGYVGLKDVNTGAKDNMMQSYFLSETLKYLYLLFSPPSVISLNEWVFNTEAHPLRIMTRSAHEESGDQEEILKHSSLLST*

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