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Report for Sequence Feature Glyma.17g058000

Feature Type:gene_model
Chromosome:Gm17
Start:4403927
stop:4408983
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g058000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G57120.1AT JGI N/AIEA
GO:0005730GO-cc nucleolus EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
PTHR23216Panther NUCLEOLAR AND COILED-BODY PHOSPHOPROTEIN 1 JGI N/AIEA
PF05022PFAM SRP40, C-terminal domain JGI N/AIEA
PF08513PFAM LisH JGI N/AIEA

Expression Patterns of Glyma.17g058000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g058000 not represented in the dataset
Glyma.17g058000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g058000
ParalogEvidenceComments
Glyma.13g101600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g058000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g06540 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.17g058000
>Glyma.17g058000.2 sequence-type=transcript locus=Glyma.17g058000 ID=Glyma.17g058000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCAGGGAAAGGGTGTTGATAAAACCCTAATTGAACCCTTCTTCTAAAGTTGTGTGGCAGTTGCAGCGCGGTGGTTCACACTTCACACGGAGAACGGAGTCGGAGGATCCGTTTTCGCATGCCTGCAACCCCACCGAGTAACAAAGGAAGAATCTCTACCCTCTTCGCTTTCACTTCTCGCCAAGTTTAGTTAAGCAACCAGACAATGAAGCACACTGACAATGGAGCTTTCAACTCGGAACACAAAGTTCTTCTTCACCAATCCATTGCCCGTTACTTGAAACACAGTGGCTTCTCCAAAACCCTAAAAAAGTTTCGCTCTGAAGCGCAATTCGAGAAAAATGATTTGAAGGGATCCCCAGTTGATCTGGAAGAAATGTGCCTCAAGTATTTTGAAATATGTGGCAAAGATGCCAAGTCAAATCTTAATGATCAGAATGAGCAAGGTGTCAACAGCAAAAACAAAGAAGAGGGTAAATCCAAGGAAAAGAAGAAAAAGAAAAGCAAGTTAGTTTCTGAATCTCTTGCCACTAATGTGGAAGATGATCAATTAGAGTCAGTAGCTACTGCTAAAGAAAATAAAGAAAAGGATGATGTTTCTACAGATGCCAAAGTTATTAATGGTTCTGAGACAGAGAAAAAATCCAAGTCTAAAATGAAAAAGAAGGACAATCGAAGTGATGAAGGTGATGCAATAGAGCAGATTGGAGATCCCAATGAAACTGTTTCAAAGGAAGAGAATATTGAAGCAAACAAAGAAATTACACATGAGGAGAAGAAAGATTCTAAGAAAAGAAAAAGATCGATTTCTGAAGAAAATGGTCAACAAGTTGCAGATATAAAGGCAGATGAAGAAACCAAACGCAGAAAAATAGAAAATTTGAATGAATCTAAGGAGCAAACCAATGGGAACCTTGAGAAGGCTGGAGAGAAATCTTCTGTACAGAGTTCTCAGAAGAAACAACAAAAGGGATCAGTTGAGAAAAAACCAGTTAATGCAGCATTTCAGCGAGTACAAGTTGACAAGATACAATTTGCTGATGAGAGGCTTCAGGATAACTCTTATTGGGCAAAGGATGGTGCCGAGAATGGTTATGGTGCTAAAGCAGCAGAAATTCTCGATCAAGTTAGAGGAAGGGGTTTTCGTCATGAGAAGACTAAGAAGAAACGTGGAAGCTACCGGGGAGGACAGATTGATTTACAATCCCACTCAGTAAAGTTTAATTATTCTGATGAGGACTGATTGACGATATTGTTTTATTTTGTGGGGGACTGCGCAGTATTGTACTATTGTTGTCCTTATTTCGTTACCATCAGACACAAAGCGAATCATGCTGCGGATATGAAATTTGTGATGGGGGAGAATGTTACATCCAAAAGACATTGCTAGGTTCTGGTAAACAAGTTGACTTTCACCTGTATGTTTTCTTTGTGATTTTTGCTGTCCGTTCCCAAAGGAACGAGAATTTTTGTAGCTGGCAAAATGAAGACACCTTTCTGTCTGAATTTGTGATACTATATACCATGCAGTTTTAATTTTAAGGCCGTGAAATTTCAGTAATTGCTGCCGATGATGAACGA

>Glyma.17g058000.3 sequence-type=transcript locus=Glyma.17g058000 ID=Glyma.17g058000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTTGTTTTTCCCTCCTCTCTTTTCAGTGGCAAAGATGCCAAGTCAAATCTTAATGATCAGAATGAGCAAGGTGTCAACAGCAAAAACAAAGAAGAGGGTAAATCCAAGGAAAAGAAGAAAAAGAAAAGCAAGTTAGTTTCTGAATCTCTTGCCACTAATGTGGAAGATGATCAATTAGAGTCAGTAGCTACTGCTAAAGAAAATAAAGAAAAGGATGATGTTTCTACAGATGCCAAAGTTATTAATGGTTCTGAGACAGAGAAAAAATCCAAGTCTAAAATGAAAAAGAAGGACAATCGAAGTGATGAAGGTGATGCAATAGAGCAGATTGGAGATCCCAATGAAACTGTTTCAAAGGAAGAGAATATTGAAGCAAACAAAGAAATTACACATGAGGAGAAGAAAGATTCTAAGAAAAGAAAAAGATCGATTTCTGAAGAAAATGGTCAACAAGTTGCAGATATAAAGGCAGATGAAGAAACCAAACGCAGAAAAATAGAAAATTTGAATGAATCTAAGGAGCAAACCAATGGGAACCTTGAGAAGGCTGGAGAGAAATCTTCTGTACAGAGTTCTCAGAAGAAACAACAAAAGGGATCAGTTGAGAAAAAACCAGTTAATGCAGCATTTCAGCGAGTACAAGTTGACAAGATACAATTTGCTGATGAGAGGCTTCAGGATAACTCTTATTGGGCAAAGGATGGTGCCGAGAATGGTTATGGTGCTAAAGCAGCAGAAATTCTCGATCAAGTTAGAGGAAGGGGTTTTCGTCATGAGAAGACTAAGAAGAAACGTGGAAGCTACCGGGGAGGACAGATTGATTTACAATCCCACTCAGTAAAGTTTAATTATTCTGATGAGGACTGATTGACGATATTGTTTTATTTTGTGGGGGACTGCGCAGTATTGTACTATTGTTGTCCTTATTTCGTTACCATCAGACACAAAGCGAATCATGCTGCGGATATGAAATTTGTGATGGGGGAGAATGTTACATCCAAAAGACATTGCTAGGTTCTGGTAAACAAGTTGACTTTCACCTGTATGTTTTCTTTGTGATTTTTGCTGTCCGTTCCCAAAGGAACGAGAATTTTTGTAGCTGGCAAAATGAAGACACCTTTCTGTCTGAATTTGTGATACTATATACCATGCAGTTTTAATTTTAAGGCCGTGAAATTTCAGTA
Coding sequences of Glyma.17g058000
>Glyma.17g058000.1 sequence-type=CDS polypeptide=Glyma.17g058000.1.p locus=Glyma.17g058000 ID=Glyma.17g058000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGCACACTGACAATGGAGCTTTCAACTCGGAACACAAAGTTCTTCTTCACCAATCCATTGCCCGTTACTTGAAACACAGTGGCTTCTCCAAAACCCTAAAAAAGTTTCGCTCTGAAGCGCAATTCGAGAAAAATGATTTGAAGGGATCCCCAGTTGATCTGGAAGAAATGTGCCTCAAGTATTTTGAAATATGTGGCAAAGATGCCAAGTCAAATCTTAATGATCAGAATGAGCAAGTTGCAGGTGTCAACAGCAAAAACAAAGAAGAGGGTAAATCCAAGGAAAAGAAGAAAAAGAAAAGCAAGTTAGTTTCTGAATCTCTTGCCACTAATGTGGAAGATGATCAATTAGAGTCAGTAGCTACTGCTAAAGAAAATAAAGAAAAGGATGATGTTTCTACAGATGCCAAAGTTATTAATGGTTCTGAGACAGAGAAAAAATCCAAGTCTAAAATGAAAAAGAAGGACAATCGAAGTGATGAAGGTGATGCAATAGAGCAGATTGGAGATCCCAATGAAACTGTTTCAAAGGAAGAGAATATTGAAGCAAACAAAGAAATTACACATGAGGAGAAGAAAGATTCTAAGAAAAGAAAAAGATCGATTTCTGAAGAAAATGGTCAACAAGTTGCAGATATAAAGGCAGATGAAGAAACCAAACGCAGAAAAATAGAAAATTTGAATGAATCTAAGGAGCAAACCAATGGGAACCTTGAGAAGGCTGGAGAGAAATCTTCTGTACAGAGTTCTCAGAAGAAACAACAAAAGGGATCAGTTGAGAAAAAACCAGTTAATGCAGCATTTCAGCGAGTACAAGTTGACAAGATACAATTTGCTGATGAGAGGCTTCAGGATAACTCTTATTGGGCAAAGGATGGTGCCGAGAATGGTTATGGTGCTAAAGCAGCAGAAATTCTCGATCAAGTTAGAGGAAGGGGTTTTCGTCATGAGAAGACTAAGAAGAAACGTGGAAGCTACCGGGGAGGACAGATTGATTTACAATCCCACTCAGTAAAGTTTAATTATTCTGATGAGGACTGA

>Glyma.17g058000.2 sequence-type=CDS polypeptide=Glyma.17g058000.2.p locus=Glyma.17g058000 ID=Glyma.17g058000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGCACACTGACAATGGAGCTTTCAACTCGGAACACAAAGTTCTTCTTCACCAATCCATTGCCCGTTACTTGAAACACAGTGGCTTCTCCAAAACCCTAAAAAAGTTTCGCTCTGAAGCGCAATTCGAGAAAAATGATTTGAAGGGATCCCCAGTTGATCTGGAAGAAATGTGCCTCAAGTATTTTGAAATATGTGGCAAAGATGCCAAGTCAAATCTTAATGATCAGAATGAGCAAGGTGTCAACAGCAAAAACAAAGAAGAGGGTAAATCCAAGGAAAAGAAGAAAAAGAAAAGCAAGTTAGTTTCTGAATCTCTTGCCACTAATGTGGAAGATGATCAATTAGAGTCAGTAGCTACTGCTAAAGAAAATAAAGAAAAGGATGATGTTTCTACAGATGCCAAAGTTATTAATGGTTCTGAGACAGAGAAAAAATCCAAGTCTAAAATGAAAAAGAAGGACAATCGAAGTGATGAAGGTGATGCAATAGAGCAGATTGGAGATCCCAATGAAACTGTTTCAAAGGAAGAGAATATTGAAGCAAACAAAGAAATTACACATGAGGAGAAGAAAGATTCTAAGAAAAGAAAAAGATCGATTTCTGAAGAAAATGGTCAACAAGTTGCAGATATAAAGGCAGATGAAGAAACCAAACGCAGAAAAATAGAAAATTTGAATGAATCTAAGGAGCAAACCAATGGGAACCTTGAGAAGGCTGGAGAGAAATCTTCTGTACAGAGTTCTCAGAAGAAACAACAAAAGGGATCAGTTGAGAAAAAACCAGTTAATGCAGCATTTCAGCGAGTACAAGTTGACAAGATACAATTTGCTGATGAGAGGCTTCAGGATAACTCTTATTGGGCAAAGGATGGTGCCGAGAATGGTTATGGTGCTAAAGCAGCAGAAATTCTCGATCAAGTTAGAGGAAGGGGTTTTCGTCATGAGAAGACTAAGAAGAAACGTGGAAGCTACCGGGGAGGACAGATTGATTTACAATCCCACTCAGTAAAGTTTAATTATTCTGATGAGGACTGA

>Glyma.17g058000.3 sequence-type=CDS polypeptide=Glyma.17g058000.3.p locus=Glyma.17g058000 ID=Glyma.17g058000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAAAGAAGGACAATCGAAGTGATGAAGGTGATGCAATAGAGCAGATTGGAGATCCCAATGAAACTGTTTCAAAGGAAGAGAATATTGAAGCAAACAAAGAAATTACACATGAGGAGAAGAAAGATTCTAAGAAAAGAAAAAGATCGATTTCTGAAGAAAATGGTCAACAAGTTGCAGATATAAAGGCAGATGAAGAAACCAAACGCAGAAAAATAGAAAATTTGAATGAATCTAAGGAGCAAACCAATGGGAACCTTGAGAAGGCTGGAGAGAAATCTTCTGTACAGAGTTCTCAGAAGAAACAACAAAAGGGATCAGTTGAGAAAAAACCAGTTAATGCAGCATTTCAGCGAGTACAAGTTGACAAGATACAATTTGCTGATGAGAGGCTTCAGGATAACTCTTATTGGGCAAAGGATGGTGCCGAGAATGGTTATGGTGCTAAAGCAGCAGAAATTCTCGATCAAGTTAGAGGAAGGGGTTTTCGTCATGAGAAGACTAAGAAGAAACGTGGAAGCTACCGGGGAGGACAGATTGATTTACAATCCCACTCAGTAAAGTTTAATTATTCTGATGAGGACTGA
Predicted protein sequences of Glyma.17g058000
>Glyma.17g058000.1.p sequence-type=predicted peptide transcript=Glyma.17g058000.1 locus=Glyma.17g058000 ID=Glyma.17g058000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKHTDNGAFNSEHKVLLHQSIARYLKHSGFSKTLKKFRSEAQFEKNDLKGSPVDLEEMCLKYFEICGKDAKSNLNDQNEQVAGVNSKNKEEGKSKEKKKKKSKLVSESLATNVEDDQLESVATAKENKEKDDVSTDAKVINGSETEKKSKSKMKKKDNRSDEGDAIEQIGDPNETVSKEENIEANKEITHEEKKDSKKRKRSISEENGQQVADIKADEETKRRKIENLNESKEQTNGNLEKAGEKSSVQSSQKKQQKGSVEKKPVNAAFQRVQVDKIQFADERLQDNSYWAKDGAENGYGAKAAEILDQVRGRGFRHEKTKKKRGSYRGGQIDLQSHSVKFNYSDED*

>Glyma.17g058000.2.p sequence-type=predicted peptide transcript=Glyma.17g058000.2 locus=Glyma.17g058000 ID=Glyma.17g058000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKHTDNGAFNSEHKVLLHQSIARYLKHSGFSKTLKKFRSEAQFEKNDLKGSPVDLEEMCLKYFEICGKDAKSNLNDQNEQGVNSKNKEEGKSKEKKKKKSKLVSESLATNVEDDQLESVATAKENKEKDDVSTDAKVINGSETEKKSKSKMKKKDNRSDEGDAIEQIGDPNETVSKEENIEANKEITHEEKKDSKKRKRSISEENGQQVADIKADEETKRRKIENLNESKEQTNGNLEKAGEKSSVQSSQKKQQKGSVEKKPVNAAFQRVQVDKIQFADERLQDNSYWAKDGAENGYGAKAAEILDQVRGRGFRHEKTKKKRGSYRGGQIDLQSHSVKFNYSDED*

>Glyma.17g058000.3.p sequence-type=predicted peptide transcript=Glyma.17g058000.3 locus=Glyma.17g058000 ID=Glyma.17g058000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKKKDNRSDEGDAIEQIGDPNETVSKEENIEANKEITHEEKKDSKKRKRSISEENGQQVADIKADEETKRRKIENLNESKEQTNGNLEKAGEKSSVQSSQKKQQKGSVEKKPVNAAFQRVQVDKIQFADERLQDNSYWAKDGAENGYGAKAAEILDQVRGRGFRHEKTKKKRGSYRGGQIDLQSHSVKFNYSDED*






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