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Report for Sequence Feature Glyma.17g055700

Feature Type:gene_model
Chromosome:Gm17
Start:4227445
stop:4231215
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g055700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G52600.1AT Peptidase S24/S26A/S26B/S26C family protein JGI N/AIEA
GO:0006465GO-bp signal peptide processing EnsemblGenomesN/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0005787GO-cc signal peptidase complex EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0008233GO-mf peptidase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
KOG3342 KOG Signal peptidase I JGI N/AIEA
PTHR10806Panther SIGNAL PEPTIDASE COMPLEX CATALYTIC SUBUNIT SEC11 JGI N/AIEA
PF00717PFAM Peptidase S24-like JGI N/AIEA

Expression Patterns of Glyma.17g055700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g055700 not represented in the dataset
Glyma.17g055700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.17g055700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g06330 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g055700
>Glyma.17g055700.1 sequence-type=CDS polypeptide=Glyma.17g055700.1.p locus=Glyma.17g055700 ID=Glyma.17g055700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAGACAGAAAGGAAGCAATAGCAATAACAATGGGTTGGATAGGTGAGAGTGTTGATTCCATCAAATCTCTTCAGATCCGCCAGGTCCTCACCCAGGCTGTTAGCCTCGGCATGATTGTTACCTCTGCACTGATAATATGGAAGGCATTGATGTGCATTACTGGCAGTGAATCTCCTGTTGTTGTTGTTCTTTCTGGAAGCATGGAACCCGGATTCAAGCGGGGAGACATCTTATTCTTGCACATGAGTAAAGACCCAATTCGGGCAGGGGAGATTGTTGTGTTTAATGTCGATGGACGTGAGATTCCAATTGTTCATCGTGTAATTAAGGTACATGAGAGGGAAGATACTGGGGAGGTTGATGTTCTCACTAAAGGAGACAACAATTATGGTGATGACAGGCTACTGTATGCTCACGGTCAACTTTGGCTGCAAAGGCACCACATTATGGGTAGAGCCGTCGGGTTCTTACCTTACGTAGGCTGGGTGACCATCATTATGACTGAAAAGCCTATTATCAAGTATATTCTCATTGGTGCTTTGGGGTTGCTCGTGATAACTTCGAAAGATTAA
Predicted protein sequences of Glyma.17g055700
>Glyma.17g055700.1.p sequence-type=predicted peptide transcript=Glyma.17g055700.1 locus=Glyma.17g055700 ID=Glyma.17g055700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGDRKEAIAITMGWIGESVDSIKSLQIRQVLTQAVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHEREDTGEVDVLTKGDNNYGDDRLLYAHGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD*






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