Glyma.17g054500

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Report for Sequence Feature Glyma.17g054500

Feature Type:	gene_model
Chromosome:	Gm17
Start:	4143438
stop:	4147686
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.17g054500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G56970.1	AT	cytokinin oxidase 3	JGI	N/A	IEA
GO:0009690	GO-bp	cytokinin metabolic process	EnsemblGenomes	N/A	IEA
GO:0009690	GO-bp	cytokinin metabolic process	JGI	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	JGI	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
GO:0008762	GO-mf	UDP-N-acetylmuramate dehydrogenase activity	JGI	N/A	IEA
GO:0016491	GO-mf	oxidoreductase activity	EnsemblGenomes	N/A	IEA
GO:0016491	GO-mf	oxidoreductase activity	JGI	N/A	IEA
GO:0016614	GO-mf	oxidoreductase activity, acting on CH-OH group of donors	EnsemblGenomes	N/A	IEA
GO:0019139	GO-mf	cytokinin dehydrogenase activity	EnsemblGenomes	N/A	IEA
GO:0019139	GO-mf	cytokinin dehydrogenase activity	JGI	N/A	IEA
GO:0050660	GO-mf	flavin adenine dinucleotide binding	EnsemblGenomes	N/A	IEA
GO:0050660	GO-mf	flavin adenine dinucleotide binding	JGI	N/A	IEA
GO:0071949	GO-mf	FAD binding	EnsemblGenomes	N/A	IEA
KOG1231	KOG	Proteins containing the FAD binding domain	JGI	N/A	IEA
PTHR13878	Panther	GULONOLACTONE OXIDASE	JGI	N/A	IEA
PTHR13878:SF19	Panther		JGI	N/A	IEA
PF01565	PFAM	FAD binding domain	JGI	N/A	IEA
PF09265	PFAM	Cytokinin dehydrogenase 1, FAD and cytokinin binding	JGI	N/A	IEA
PWY-2841	SoyCyc9	cytokinins degradation	Plant Metabolic Network		ISS
GN7V-55712	SoyCyc9-rxn	cytokinin dehydrogenase	Plant Metabolic Network		ISS

Proteins Associated with Glyma.17g054500

Locus	Gene Symbol	Protein Name
	CKX3	cytokinin dehydrogenase 3-like

Expression Patterns of Glyma.17g054500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.17g054500

Paralog	Evidence	Comments
Glyma.13g104700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g054500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma17g06220	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.17g054500

Limit To All Plant Sequences

>Glyma.17g054500.1 sequence-type=CDS polypeptide=Glyma.17g054500.1.p locus=Glyma.17g054500 ID=Glyma.17g054500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCTAAACTACCCTTTTTTAACCTACTTCATACTACTGCTAGTAACCATAACCCGTTTGATATTCACTGTGGGAAAAACTGAGCAATGGAAAGCTCCGATTCTACCAGAGCTTGACATTGATAACATATCCCACAAACTCCATGATGACCCTGAAACCATTCAAATGGCTTCAAGGGACTATGGCCATTTAACGCATGAATTCCCATTAGCTGTGTTTCGTCCATCTTCTATAGATGACATAGTCACCTTGATAAAATCTTCGTACAATAGCTTTGCCCCTTTTGACATAGCTGCGAGGGGCCAAGGCCACTCCACTCATGGACAAGCCATGGCTCGTGATGGGATTGTGGTGGACATGGCCAGCCTAAGAAAACAAAGAAATGGGGTTGCGATTAGTGTCTCTAAGGACCCTTTGATGGGTCACTATGCTGATGTTGGAGGGGAACAACTCTGGATTGATGTGCTACATGCCACACTTGAATATGGACTTGCACCAGTTTCTTGGACTGATTATTTGTACTTGACCGTGGGAGGGACACTTTCTAATGCTGGAATCAGTGGCCAGAGCTTCCGTTATGGACCTCAAATCAGCAACGTTCATGAAATGGATGTCATCACTGGAAAAGGAGAGTTCGTAACATGCTCTTCACAGAAGAACTTGGAGTTATTCCACGCGGTTCTTGGAGGCTTGGGACAATTTGGAGTTATAGCAAGGGCGAGAATTGCTCTTGAGCCAGCACCCAAAAGGGTTAAGTGGGTCAGACTACTTTATAGTGACTTTTCTGCTTTTACCAAAGACCAGGAACGATTAATCTCAATCAATGGAAGGAAACAAAAGAACGCATTGGATTTTCTGGAAGGGATGCTGCTAATGAACCAAGGCCCCATAAATAATTGGAGATCCTCTTTCTTCCCTCTATCTGACCATCCCAGAATAGCTTCTTTAATAACTGAACATAGCATCCTCTACTGTCTTGAAGTGGCTAAATATTATGACGAACAAACCGAGTTAAATGTGGACAAGGAAATTGAAGTTTTGCTCCAAGGACTAGCCTATATCCCTGGATTTAATTATGAGAAAAATGTCTCGTACGTTGAGTTCTTGAATAGGGTCCGAAGTGGAGAGTTGAAACTTCAGTCACAAGGACTGTGGGAAGTTCCTCACCCGTGGCTTAATTTGTTTATACCAAAATCTCAAATCTTGGATTTTAATTCAGGAGTATTCAAAGATATAGTTCTTAAAAGAAACATCTCCTCTGGACCAGTCTTGGTTTATCCCATGAATAGAAACAAGTGGGACGATAGGATGTCAGCATCTATACCAGACGAGGATGTTTTCTACACAGTTGGGTTTTTGCACTCAAGTGGGTTTGATACTTGGAAGGCATATGATGCTCAAAACAGAGAAATTTTGGAGTTCTGTAGAGATGCTGGCATCATGGTCAAGCAATATCTTCCCAACCACAGCACACAAGAAGATTGGACAAACCATTTTGGTGCTAAATGGATGAAATTCTTAGAAAGAAAACATCAGTTTGATCCAAGAATGATTCTATCACCTGGGCAAAAAATCTTCCACAAAAAATTACAGCCAGTGTTTTAA

Predicted protein sequences of Glyma.17g054500

Limit To All Plant Sequences

>Glyma.17g054500.1.p sequence-type=predicted peptide transcript=Glyma.17g054500.1 locus=Glyma.17g054500 ID=Glyma.17g054500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALNYPFLTYFILLLVTITRLIFTVGKTEQWKAPILPELDIDNISHKLHDDPETIQMASRDYGHLTHEFPLAVFRPSSIDDIVTLIKSSYNSFAPFDIAARGQGHSTHGQAMARDGIVVDMASLRKQRNGVAISVSKDPLMGHYADVGGEQLWIDVLHATLEYGLAPVSWTDYLYLTVGGTLSNAGISGQSFRYGPQISNVHEMDVITGKGEFVTCSSQKNLELFHAVLGGLGQFGVIARARIALEPAPKRVKWVRLLYSDFSAFTKDQERLISINGRKQKNALDFLEGMLLMNQGPINNWRSSFFPLSDHPRIASLITEHSILYCLEVAKYYDEQTELNVDKEIEVLLQGLAYIPGFNYEKNVSYVEFLNRVRSGELKLQSQGLWEVPHPWLNLFIPKSQILDFNSGVFKDIVLKRNISSGPVLVYPMNRNKWDDRMSASIPDEDVFYTVGFLHSSGFDTWKAYDAQNREILEFCRDAGIMVKQYLPNHSTQEDWTNHFGAKWMKFLERKHQFDPRMILSPGQKIFHKKLQPVF*

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