Glyma.17g053900

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Report for Sequence Feature Glyma.17g053900

Feature Type:	gene_model
Chromosome:	Gm17
Start:	4098465
stop:	4104857
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.17g053900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G19490.1	AT	recA DNA recombination family protein	JGI	N/A	IEA
GO:0006259	GO-bp	DNA metabolic process	EnsemblGenomes	N/A	IEA
GO:0006281	GO-bp	DNA repair	EnsemblGenomes	N/A	IEA
GO:0006281	GO-bp	DNA repair	JGI	N/A	IEA
GO:0006310	GO-bp	DNA recombination	EnsemblGenomes	N/A	IEA
GO:0006974	GO-bp	cellular response to DNA damage stimulus	EnsemblGenomes	N/A	IEA
GO:0009432	GO-bp	SOS response	JGI	N/A	IEA
GO:0000166	GO-mf	nucleotide binding	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	EnsemblGenomes	N/A	IEA
GO:0003697	GO-mf	single-stranded DNA binding	EnsemblGenomes	N/A	IEA
GO:0003697	GO-mf	single-stranded DNA binding	JGI	N/A	IEA
GO:0005524	GO-mf	ATP binding	EnsemblGenomes	N/A	IEA
GO:0005524	GO-mf	ATP binding	JGI	N/A	IEA
GO:0008094	GO-mf	DNA-dependent ATPase activity	EnsemblGenomes	N/A	IEA
KOG1433	KOG	DNA repair protein RAD51/RHP55	JGI	N/A	IEA
PTHR22942	Panther	RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER	JGI	N/A	IEA
PTHR22942:SF1	Panther	MITOCHONDRIAL DNA REPAIR PROTEIN RECA HOMOLOG	JGI	N/A	IEA
PF00154	PFAM	recA bacterial DNA recombination protein	JGI	N/A	IEA
GN7V-67029	SoyCyc9-rxn	ATP diphosphatase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.17g053900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g053900 not represented in the dataset	Glyma.17g053900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.17g053900

Paralog	Evidence	Comments
Glyma.13g105500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g053900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma17g06180	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.17g053900

Limit To All Plant Sequences

>Glyma.17g053900.2 sequence-type=transcript locus=Glyma.17g053900 ID=Glyma.17g053900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCTGATACTGATGATATTGGTTCATGATCAGTTCTTGCTTTCATATGCAGGTCTTTAAACTAGGAATGATTGGCACTTCTCAGATTTTGAGCTTCTCATCTAAAGGTAGAAGGCGCTCTAAATCTGATGGAAGTGACTCAGGTGAAGAGAACATGTCTAAGAAAGAGTTGGCCCTTCAGCAAGCTCTTGATCAGATCACTTCCGCATTTGGAAAGGGATCCATCATGTGGCTTGGTCGTTCTGTCTCACCAAAAAATGTACCTGTTGTGTCTACTGGTTCTTTTGCTCTTGATGTAGCACTAGGAATTGGTGGTCTTCCAAAGGGACGTGTTGTGGAAATATATGGTCCAGAGGCTTCTGGAAAAACAACTCTTGCTTTACATGTGATTGCAGAGGCACAAAAGCAAGGAGGCTATTGTGTCTTTGTCGATGCCGAGCATGCCCTTGATAAGACACTGGCAGAGTCTATTGGTGTGAATACAACGAACTTGCTTCTCTCCCAACCTGATTGTGGTGAACAAGCACTAAGTCTTGTGGATACCTTAATCCGTAGTGGTTCAGTTGATGTAGTTGTTGTTGACAGTGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAAATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGCCAGGCTCTTCGAAAATTGAGCCATGCCTTGTCACTTTCTCAAACTATATTAATTTTTATAAACCAGGTGAGGTCAAAGATTTCAACTTTTGGGGGATTTAGTGGGCCTACTGAAGTTACTTGTGGTGGGAATGCATTGAAATTCTATGCTTCAGTGCGGCTAAATATCAAGAGAATAGGGTTTGTCAAGAAGGGTGAAGAGATTTTAGGAAGTCAGGTTCTTGTCAAGGTTGTGAAGAACAAGCTTGCCCCTCCATTTAAAACTGCCGAGTTTGAGCTTCAATTTGGCAAAGGTATATGTAAAGAAACAGAGATTATAGACTTGAGCGTAAATCACAAACTCATCTCAAAGGCTGGTGCCATGTTTTACTATAACGAACATAGTTTCCGTGGTAAGGATGCCCTAAAGAATTTTCTGGCCGAGAATCGAAGTGCATTAGAAGAACTTGAAATGAAGCTCAGGGAGAAGCTTCTTAATGCTGAGACAGAAAAGATGCAAGAGTCGGATGTAATTAATGGATATGTTACCGAAGAAATTGCAACAGTTGATTCTACTAATGACAATGTTACAGAAAAAATTGCAACAGTTGATTCTACTGATGAAGAAGCTGCAGCTATTGTTGAAGCATGATTTTGTGGATGAACATAAATTATGGATCTCCCTATTTTCCCTGCCTCAATCTGGACCCTGTGATTCATATATGTCGTAGTTTGATGAATTGGCCCTAAAATGGTCCATTCAAACGAAGGTCTTAAGAAGCAATTCATGGCCGAATGCTTCTAGTTTGGAATATCATTCTTGCTTGCGGTCAAATGATTAAGTCATTATACTACCTGTAAATTGAAATTTTCGGTCATTTTATATAGGCCTAGTCGTATGGCACATGTAAATTGAGAATGAAATGGACCAACTGCATAGGAAGCTAGGTACTAGGTACTCGAGTGTTGAGTCATGGCCAACCAATTATTTGTAAGGATTATGTTATGCAATTTGTAGAATGATGCATACGTTTCTCATAAATCAATTTGTGTATTGTGTTTT

Coding sequences of Glyma.17g053900

Limit To All Plant Sequences

>Glyma.17g053900.1 sequence-type=CDS polypeptide=Glyma.17g053900.1.p locus=Glyma.17g053900 ID=Glyma.17g053900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACATGTTGTCACATTCCATTTTCCTTCTTCAAAATTTGTTCTTCCTTTGAACCCCTCAAAGTCAAACCTGCTTCTATGGCGAGACTGCTTCGGAACACTTCCCTTCTCACACGCTCCCTATTCTTCCCTAAGGTCTTTAAACTAGGAATGATTGGCACTTCTCAGATTTTGAGCTTCTCATCTAAAGGTAGAAGGCGCTCTAAATCTGATGGAAGTGACTCAGGTGAAGAGAACATGTCTAAGAAAGAGTTGGCCCTTCAGCAAGCTCTTGATCAGATCACTTCCGCATTTGGAAAGGGATCCATCATGTGGCTTGGTCGTTCTGTCTCACCAAAAAATGTACCTGTTGTGTCTACTGGTTCTTTTGCTCTTGATGTAGCACTAGGAATTGGTGGTCTTCCAAAGGGACGTGTTGTGGAAATATATGGTCCAGAGGCTTCTGGAAAAACAACTCTTGCTTTACATGTGATTGCAGAGGCACAAAAGCAAGGAGGCTATTGTGTCTTTGTCGATGCCGAGCATGCCCTTGATAAGACACTGGCAGAGTCTATTGGTGTGAATACAACGAACTTGCTTCTCTCCCAACCTGATTGTGGTGAACAAGCACTAAGTCTTGTGGATACCTTAATCCGTAGTGGTTCAGTTGATGTAGTTGTTGTTGACAGTGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAAATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGCCAGGCTCTTCGAAAATTGAGCCATGCCTTGTCACTTTCTCAAACTATATTAATTTTTATAAACCAGGTGAGGTCAAAGATTTCAACTTTTGGGGGATTTAGTGGGCCTACTGAAGTTACTTGTGGTGGGAATGCATTGAAATTCTATGCTTCAGTGCGGCTAAATATCAAGAGAATAGGGTTTGTCAAGAAGGGTGAAGAGATTTTAGGAAGTCAGGTTCTTGTCAAGGTTGTGAAGAACAAGCTTGCCCCTCCATTTAAAACTGCCGAGTTTGAGCTTCAATTTGGCAAAGGTATATGTAAAGAAACAGAGATTATAGACTTGAGCGTAAATCACAAACTCATCTCAAAGGCTGGTGCCATGTTTTACTATAACGAACATAGTTTCCGTGGTAAGGATGCCCTAAAGAATTTTCTGGCCGAGAATCGAAGTGCATTAGAAGAACTTGAAATGAAGCTCAGGGAGAAGCTTCTTAATGCTGAGACAGAAAAGATGCAAGAGTCGGATGTAATTAATGGATATGTTACCGAAGAAATTGCAACAGTTGATTCTACTAATGACAATGTTACAGAAAAAATTGCAACAGTTGATTCTACTGATGAAGAAGCTGCAGCTATTGTTGAAGCATGA

>Glyma.17g053900.2 sequence-type=CDS polypeptide=Glyma.17g053900.2.p locus=Glyma.17g053900 ID=Glyma.17g053900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATCAGTTCTTGCTTTCATATGCAGGTCTTTAAACTAGGAATGATTGGCACTTCTCAGATTTTGAGCTTCTCATCTAAAGGTAGAAGGCGCTCTAAATCTGATGGAAGTGACTCAGGTGAAGAGAACATGTCTAAGAAAGAGTTGGCCCTTCAGCAAGCTCTTGATCAGATCACTTCCGCATTTGGAAAGGGATCCATCATGTGGCTTGGTCGTTCTGTCTCACCAAAAAATGTACCTGTTGTGTCTACTGGTTCTTTTGCTCTTGATGTAGCACTAGGAATTGGTGGTCTTCCAAAGGGACGTGTTGTGGAAATATATGGTCCAGAGGCTTCTGGAAAAACAACTCTTGCTTTACATGTGATTGCAGAGGCACAAAAGCAAGGAGGCTATTGTGTCTTTGTCGATGCCGAGCATGCCCTTGATAAGACACTGGCAGAGTCTATTGGTGTGAATACAACGAACTTGCTTCTCTCCCAACCTGATTGTGGTGAACAAGCACTAAGTCTTGTGGATACCTTAATCCGTAGTGGTTCAGTTGATGTAGTTGTTGTTGACAGTGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAAATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGCCAGGCTCTTCGAAAATTGAGCCATGCCTTGTCACTTTCTCAAACTATATTAATTTTTATAAACCAGGTGAGGTCAAAGATTTCAACTTTTGGGGGATTTAGTGGGCCTACTGAAGTTACTTGTGGTGGGAATGCATTGAAATTCTATGCTTCAGTGCGGCTAAATATCAAGAGAATAGGGTTTGTCAAGAAGGGTGAAGAGATTTTAGGAAGTCAGGTTCTTGTCAAGGTTGTGAAGAACAAGCTTGCCCCTCCATTTAAAACTGCCGAGTTTGAGCTTCAATTTGGCAAAGGTATATGTAAAGAAACAGAGATTATAGACTTGAGCGTAAATCACAAACTCATCTCAAAGGCTGGTGCCATGTTTTACTATAACGAACATAGTTTCCGTGGTAAGGATGCCCTAAAGAATTTTCTGGCCGAGAATCGAAGTGCATTAGAAGAACTTGAAATGAAGCTCAGGGAGAAGCTTCTTAATGCTGAGACAGAAAAGATGCAAGAGTCGGATGTAATTAATGGATATGTTACCGAAGAAATTGCAACAGTTGATTCTACTAATGACAATGTTACAGAAAAAATTGCAACAGTTGATTCTACTGATGAAGAAGCTGCAGCTATTGTTGAAGCATGA

Predicted protein sequences of Glyma.17g053900

Limit To All Plant Sequences

>Glyma.17g053900.1.p sequence-type=predicted peptide transcript=Glyma.17g053900.1 locus=Glyma.17g053900 ID=Glyma.17g053900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTCCHIPFSFFKICSSFEPLKVKPASMARLLRNTSLLTRSLFFPKVFKLGMIGTSQILSFSSKGRRRSKSDGSDSGEENMSKKELALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDVALGIGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDKTLAESIGVNTTNLLLSQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHALSLSQTILIFINQVRSKISTFGGFSGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEEILGSQVLVKVVKNKLAPPFKTAEFELQFGKGICKETEIIDLSVNHKLISKAGAMFYYNEHSFRGKDALKNFLAENRSALEELEMKLREKLLNAETEKMQESDVINGYVTEEIATVDSTNDNVTEKIATVDSTDEEAAAIVEA*

>Glyma.17g053900.2.p sequence-type=predicted peptide transcript=Glyma.17g053900.2 locus=Glyma.17g053900 ID=Glyma.17g053900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MISSCFHMQVFKLGMIGTSQILSFSSKGRRRSKSDGSDSGEENMSKKELALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDVALGIGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDKTLAESIGVNTTNLLLSQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHALSLSQTILIFINQVRSKISTFGGFSGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEEILGSQVLVKVVKNKLAPPFKTAEFELQFGKGICKETEIIDLSVNHKLISKAGAMFYYNEHSFRGKDALKNFLAENRSALEELEMKLREKLLNAETEKMQESDVINGYVTEEIATVDSTNDNVTEKIATVDSTDEEAAAIVEA*

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