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Report for Sequence Feature Glyma.17g053200

Feature Type:gene_model
Chromosome:Gm17
Start:4047569
stop:4050448
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g053200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G54270.1AT eif4a-2 JGI N/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0004386GO-mf helicase activity EnsemblGenomesN/AIEA
GO:0004386GO-mf helicase activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0008026GO-mf ATP-dependent helicase activity JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
KOG0327 KOG Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases JGI N/AIEA
PTHR24031Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24031:SF2Panther ATP-DEPENDENT RNA HELICASE DDX55 JGI N/AIEA
PF00270PFAM DEAD/DEAH box helicase JGI N/AIEA
PF00271PFAM Helicase conserved C-terminal domain JGI N/AIEA

Expression Patterns of Glyma.17g053200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g053200
ParalogEvidenceComments
Glyma.13g106200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g053200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g06110 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g053200
>Glyma.17g053200.1 sequence-type=CDS polypeptide=Glyma.17g053200.1.p locus=Glyma.17g053200 ID=Glyma.17g053200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGGACTAGCACCTGAGGGGTCACAGTTCGATGCTCGTCAATATGATTCCAAAATGAGTGACTTACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGATAGTTTTGACGCTATGGGTTTGCAGGAGAATCTTCTCAGGGGAATTTACGCATACGGTTTTGAGAAGCCATCAGCCATTCAGCAAAGGGGGATAGTTCCCTTCTGCAAGGGACTTGATGTTATTCAACAGGCTCAATCTGGAACTGGGAAGACGGCTACTTTCTGCTCTGGTATTCTGCAGCAACTTGACTATAGCTTGACTCAATGCCAGGCCTTGGTTTTGGCACCAACTCGTGAGCTTGCTCAGCAGATTGAGAAAGTTATGCGGGCACTTGGAGATTATCAAGGTGTGAAGGTTCATGCTTGTGTGGGAGGTACCAGTGTGCGTGAGGACCAGCGCATTCTATCTAGTGGTGTTCATGTTGTGGTTGGTACCCCTGGTCGTGTGTTTGATATGCTGCGCCGACAGTCACTTCAGCCAGACCACATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCCCGAGGTTTCAAGGATCAGATCTACGATATATTTCAGCTGCTTCCATCTAAGATTCAAGTGGGAGTTTTCTCTGCCACAATGCCTCCTGAGGCCCTTGAGATCACCAGGAAGTTTATGAACAAACCTGTGAGGATCCTTGTGAAGCGTGATGAGCTCACCTTGGAGGGTATTAAGCAATTTTATGTCAATGTTGAAAAGGAGGAATGGAAGCTGGACACACTCTGCGATCTTTATGAGACATTAGCTATCACTCAGAGTGTCATTTTTGTTAACACCAGAAGGAAAGTTGATTGGTTGACTGACAAGATGAGAAGCCGTGACCACACAGTCTCAGCAACCCACGGAGACATGGACCAGAATACCAGGGACATTATTATGCGTGAATTCCGTTCTGGGTCTTCCCGTGTCTTGATAACCACTGATCTTTTGGCTCGTGGTATTGATGTCCAACAAGTGTCTCTAGTTATAAATTTTGATCTCCCAACACAGCCTGAGAACTATCTCCATCGTATTGGTCGTAGTGGGAGGTTCGGAAGGAAGGGTGTTGCGATCAACTTTGTCACAAAGGATGACGAGAAAATGCTGTTTGACATCCAGAAGTTTTACAACGTGCAAGTTGAGGAGCTGCCTTCAAATGTTGCTGAGCTCCTTTGA
Predicted protein sequences of Glyma.17g053200
>Glyma.17g053200.1.p sequence-type=predicted peptide transcript=Glyma.17g053200.1 locus=Glyma.17g053200 ID=Glyma.17g053200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAGLAPEGSQFDARQYDSKMSDLLSSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLTQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLQPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDEKMLFDIQKFYNVQVEELPSNVAELL*






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