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Report for Sequence Feature Glyma.17g053100

Feature Type:gene_model
Chromosome:Gm17
Start:4039655
stop:4046333
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g053100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G19430.1AT DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG0649 KOG WD40 repeat protein JGI N/AIEA
PTHR22847Panther WD40 REPEAT PROTEIN JGI N/AIEA
PTHR22847:SF1Panther JGI N/AIEA
PF00400PFAM WD domain, G-beta repeat JGI N/AIEA

Expression Patterns of Glyma.17g053100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g053100
ParalogEvidenceComments
Glyma.13g106300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g053100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g06100 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g053100
>Glyma.17g053100.1 sequence-type=CDS polypeptide=Glyma.17g053100.1.p locus=Glyma.17g053100 ID=Glyma.17g053100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGCGGTGACGCCACGAACTGGGACGAAGACGCATACAGAGAAACCATTCTCAAGGAGAGGGAAATCCAAACCCGAACCGTTTTCCGAACCGCTTGGGCCCCACCCTACACCTCTAACCTCGACACTCTCATCCTTGCCTCTAGCGACGGTTCCGTCGCATCCTACTCCATCTCTTCCTCCATCGCCGCCTCTAAGATAAAAAATCCATTCGGTTTCGTCAATGCCGATACAGATGAGTTGTTGGCTGAACCAAATTGCTTCGTTCAAGCGCACGATGGACCTGCTTACGATGTCAGATTTTATGGTGATGGCGAAGATGCTCTGTTGCTGAGCTGTGGTGATGATGGTCGGATTCGAGGATGGAGATGGAACGAATTTTCAAGCTCAAATTATTCTGTTTCTTCCCAAGGAAATGATATCAAGCCTGTACTTGATGTGGTGAATCCCCAACACAAAGGTCCTTGGGGTGCGCTTTCACCTATCCCTGAGAATAATGCTATTGCTGTCAATACTCAGGGGGGATCTGTTTTTGCTGCATCTGGCGATTCTTGTGCATATTGTTGGGATGTGGAAACTGGTAAAGTGAAAATGGTATTCAAGGGGCACATGGACTATTTGCATTGTATAGTTGCTCGCAACTCATTAGATCAGATCATAACAGGTTCGGAGGATGGGACGACACGAATTTGGGATTGCAAAAGTGGAAAGTGTACGCAAGTGATTGATCCAGCAAGAGATTTGAAATTAAAGGGATCTGCTTCTTGGGTTGGCTGTGTTGCTTTAGATGCAAGTGAGAGCTGGTTGGCTTGCAGTAGTGGACGTAATATATCACTTTGGAACCTTCCTGCTTCTGAATGCATATCAAAGATTCCTACCCGTGCTTGTGTACAAGACATGTTATTTGACAATAATCAAATTTTGACAGTTGGTACAGATCCTCTACTCAATCGCTTTGACATGAACGGCACTATCCTTTCACAAATACAGTGTGCTCCTTCGTCATCTTTTTCTATCTCCTTACATCCTGCAGGGGTTATGGCAGTTGGAGGTTATGGATGTCTTGTTGATGTTATCTCACAATTTGGCAGCCACATGTGCACATTTCATTGCCAGTGTTTCTAA
Predicted protein sequences of Glyma.17g053100
>Glyma.17g053100.1.p sequence-type=predicted peptide transcript=Glyma.17g053100.1 locus=Glyma.17g053100 ID=Glyma.17g053100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MCGDATNWDEDAYRETILKEREIQTRTVFRTAWAPPYTSNLDTLILASSDGSVASYSISSSIAASKIKNPFGFVNADTDELLAEPNCFVQAHDGPAYDVRFYGDGEDALLLSCGDDGRIRGWRWNEFSSSNYSVSSQGNDIKPVLDVVNPQHKGPWGALSPIPENNAIAVNTQGGSVFAASGDSCAYCWDVETGKVKMVFKGHMDYLHCIVARNSLDQIITGSEDGTTRIWDCKSGKCTQVIDPARDLKLKGSASWVGCVALDASESWLACSSGRNISLWNLPASECISKIPTRACVQDMLFDNNQILTVGTDPLLNRFDMNGTILSQIQCAPSSSFSISLHPAGVMAVGGYGCLVDVISQFGSHMCTFHCQCF*






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