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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma.17g052800

Feature Type:gene_model
Chromosome:Gm17
Start:4012912
stop:4019194
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g052800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G57035.1AT U-box domain-containing protein kinase family protein JGI N/AIEA
GO:0006024GO-bp glycosaminoglycan biosynthetic process EnsemblGenomesN/AIEA
GO:0006468GO-bp protein phosphorylation EnsemblGenomesN/AIEA
GO:0006468GO-bp protein phosphorylation JGI N/AIEA
GO:0006950GO-bp response to stress EnsemblGenomesN/AIEA
GO:0006950GO-bp response to stress JGI N/AIEA
GO:0016567GO-bp protein ubiquitination EnsemblGenomesN/AIEA
GO:0016567GO-bp protein ubiquitination JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0000151GO-cc ubiquitin ligase complex JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity JGI N/AIEA
GO:0004842GO-mf ubiquitin-protein transferase activity EnsemblGenomesN/AIEA
GO:0004842GO-mf ubiquitin-protein ligase activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0016616GO-mf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor EnsemblGenomesN/AIEA
GO:0051287GO-mf NAD binding EnsemblGenomesN/AIEA
KOG1187 KOG Serine/threonine protein kinase JGI N/AIEA
PTHR24420Panther LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE JGI N/AIEA
PTHR24420:SF932Panther JGI N/AIEA
PF00069PFAM Protein kinase domain JGI N/AIEA
PF00582PFAM Universal stress protein family JGI N/AIEA
PF04564PFAM U-box domain JGI N/AIEA

Expression Patterns of Glyma.17g052800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g052800 not represented in the dataset
Glyma.17g052800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g052800
ParalogEvidenceComments
Glyma.13g106500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g052800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g06070 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.17g052800
>Glyma.17g052800.2 sequence-type=transcript locus=Glyma.17g052800 ID=Glyma.17g052800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAGTCTTTAAGTAAATTCAACGGTTGGTGCAGTAGTTGAAGACTTGAAGAGGAGCAATTAAATTAAAAGTATCGTTGACCAACTGAAATATGTCCACACCGTCGCGGAGATCGGTTGCCGTTGCCGTGAGCGGCGGGTCCAAGGGTAGCCGGCGAGCAGTGCAGTGGGCTGCGGACAATTTGGTCCCTCAAGCCGATAGGTTCATCTTAGTTCACGTCATCCCTCGAATCACTTCAATTGCAACACCAACTGGAGAGTATATTCCTATTTCCGAAGCAGACGCCGATGTGTTTGCAGCTTCTGTGCTGGATGCGAAACTAAAATCTGAACAAATCTTTGTTCCGTTCAAGAAACTCTGTGATTCAAACACGATGGAAACAGTACTGCTAGAAGATGACAATGCTGCAGAAGCACTTCTTAGCTTTATTTCGGAGTCCGGGTCCCAAATATTAGTGCTGGGTTCTGACTCCTCAAATTTCATAACAAGGAAGCTAAAAGGACCTGGGATACCAACTACCATTCTAAGATGTGCTCCTGACAGTTGTGATGTATATATTGTAGCTAGAGATAGAATTATATCCAAGTTGGCTGACTTTTCATCTTCACGTTCTCATGAGACTAGCCCTAGGTACTTCTTGTCTACTAAAGTAAATAAAGAGGACAATGGCATTGGCAGAGAAATGTCTGGAATTAGTTCATCCTCAAATGAACCTAAAATTCTAAGGAATTTCCGGTTTTTATCCATATCAGAGCGTAGTTACATTGGTCTGCAATCATCTAGTCGTAGGAATTCTTTTGAAAATTCTACCAAAAATGAAGAACAAAATTCAGAAAACTGTGGAGATGATATTGAAACTATCAGCCTCCACTCATTTGATTCCATTGCTTCTGCACAACGTGAACAGTTAGTCATGCAAGAAGAAGTGGAACGGCTGCAGCTGGAGTTGCAAAATACTATCACCATGTACAAACAGGTCTGTGAAGAACTGGTTCAAGCTCAAAACCAGGCCCTTTTACTTTCTTCTGAATCTCTTGAAGAAACTAAAATAGTTAATGCTTCCTTAAAAAGAGAGGAGATTTTGAGAAAGTTTGCTGCTGAAGAGAAAACAAAGTACTTAAAAGTCATGAAGGAGCTTGAGGAGGCGAAAAATAAGTTTTCCAAAGAGTCATATGAAAGACAGATGGCTGAACTTGATGTCCTTAGAGAATCAATAGAAAGACAGAGAATTGTGGATACATTGCTCTCAAATGACAGGAGATACAGAAAGTACACCATGGATGAAATCAAGCTAGCAACGAACTTTTTTGCTGAGGACTTGATAATTGGTGAAGGAGGATATGGGAAAGTTTACAAGTGTAATCTTGATCACACACCAGTAGCTGTAAAGGTTCTGCACCAGGACGCAATCAACAAGAAAGAGGAGTTTCTAAAAGAGGTTGAGATTCTTAGTCAACTACATCATCCTAATATGGTATTGTTACTTGGAGCCTGTCCTGAGAGTGGCTGTCTTGTTTATGAATACATGGAAAATGGAAGTCTAGAAGACTATCTTCTAAAAAAAAATGGAAAACCACCACTTCCTTGGTTTTTTCGATTTCGTATAGTTTTTGAAATGGCTTGTGGGCTCTCATTCTTGCATAATTCAAAGCCAGAGCCTATTGTCCATCGAGATATAAAACCTGGCAATGTCTTGTTAGACAGAAATTATGTGAGCAAAATTGCAGATGTTGGGCTGGCTAAACTCCTTGTAGAAGTCGTGCCTGACAATGTCACAGAGTACAGAGAATCAATTCTTGCCGGTACTCTGCATTACATGGACCCAGAGTATCAGAGAACTGGCACTGTCAGACCAAAATCAGATGTATATGCTTTTGGAGTTATAACTCTCCAATTGATAACTGGTCGACATGCGCGTGGACTCATTGTGACTGTTGAAGATGCAATTACAAATGGCTCCTTCCGTGATATTTTAGATCCATCAGCTGGAGATTGGCCACTGGATGAGACAGTGGAATTGGCTCAAGTAGCCCTTAAATGCACTGCACTCAGATGCAGAGATAGACCAGAGATTGATACTGAAGTTCTTCCAATGCTCCAAAGATTTTCTGATGCGGCAAATGCTAGTGCAAGGATGGGAAGAAATAGTGTAAGTGCGCCAAGCCAGTATTATTGTCCAATCCTTCAGGAAATCATGGATGATCCATATATTGCTGCGGATGGGTTCACTTATGAGTACGTAGCAATCAAGGCATGGCTCAGCAAACACAATGTGTCACCCATGACAAAGCTTAAACTTCAGCATTCTGTGTTGACTCCAAACCATACTTTACGTTCAGCCATTCAGGAGTGGAAGTCTGGAGTGACCTTTTGATTAGTGTGCTATATATAAGATGAACGCCAGTATTCTATTGCTGCTAGTGCCACTGCATAGCAGAGTAGCAAACAACTTTACTATGGCTCTTACTAGTTACAATCCCTTCAGCCTTTACATACATGTAATCATTTGTAACTTTATTTCTACATTCTGGTGACTTATAGCGACAAAGGGGTGTAGCCTAGCAAGTAATATCCATAAACATCAACCATCTACTTGTGTAAACTCTAGAGCATTTGCATCGGGATCACGTGCAAAGATTGCTGGTCTTCCAGAATGACTAAGTGTGTAAGGGATCC
Coding sequences of Glyma.17g052800
>Glyma.17g052800.1 sequence-type=CDS polypeptide=Glyma.17g052800.1.p locus=Glyma.17g052800 ID=Glyma.17g052800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCCACACCGTCGCGGAGATCGGTTGCCGTTGCCGTGAGCGGCGGGTCCAAGGGTAGCCGGCGAGCAGTGCAGTGGGCTGCGGACAATTTGGTCCCTCAAGCCGATAGGTTCATCTTAGTTCACGTCATCCCTCGAATCACTTCAATTGCAACACCAACTGGAGAGTATATTCCTATTTCCGAAGCAGACGCCGATGTGTTTGCAGCTTCTGTGCTGGATGCGAAACTAAAATCTGAACAAATCTTTGTTCCGTTCAAGAAACTCTGTGATTCAAACACGATGGAAACAGTACTGCTAGAAGATGACAATGCTGCAGAAGCACTTCTTAGCTTTATTTCGGAGTCCGGGTCCCAAATATTAGTGCTGGGTTCTGACTCCTCAAATTTCATAACAAGGAAGCTAAAAGGACCTGGGATACCAACTACCATTCTAAGATGTGCTCCTGACAGTTGTGATGTATATATTGTAGCTAGAGATAGAATTATATCCAAGTTGGCTGACTTTTCATCTTCACGTTCTCATGAGACTAGCCCTAGGTACTTCTTGTCTACTAAAGTAAATAAAGAGGACAATGGCATTGGCAGAGAAATGTCTGGAATTAGTTCATCCTCAAATGAACCTAAAATTCTAAGGAATTTCCGGTTTTTATCCATATCAGAGCGTAGTTACATTGGTCTGCAATCATCTAGTCGTAGGAATTCTTTTGAAAATTCTACCAAAAATGAAGAACAAAATTCAGAAAACTGTGGAGATGATATTGAAACTATCAGCCTCCACTCATTTGATTCCATTGCTTCTGCACAACGTGAACAGTTAGTCATGCAAGAAGAAGTGGAACGGCTGCAGCTGGAGTTGCAAAATACTATCACCATGTACAAACAGGTCTGTGAAGAACTGGTTCAAGCTCAAAACCAGGCCCTTTTACTTTCTTCTGAATCTCTTGAAGAAACTAAAATAGTTAATGCTTCCTTAAAAAGAGAGGAGATTTTGAGAAAGTTTGCTGCTGAAGAGAAAACAAAGTACTTAAAAGTCATGAAGGAGCTTGAGGAGGCGAAAAATAAGTTTTCCAAAGAGTCATATGAAAGACAGATGGCTGAACTTGATGTCCTTAGAGAATCAATAGAAAGACAGAGAATTGTGGATACATTGCTCTCAAATGACAGGAGATACAGAAAGTACACCATGGATGAAATCAAGCTAGCAACGAACTTTTTTGCTGAGGACTTGATAATTGGTGAAGGAGGATATGGGAAAGTTTACAAGTGTAATCTTGATCACACACCAGTAGCTGTAAAGGTTCTGCACCAGGACGCAATCAACAAGAAAGAGGAGTTTCTAAAAGAGGTTGAGATTCTTAGTCAACTACATCATCCTAATATGGTATTGTTACTTGGAGCCTGTCCTGAGAGTGGCTGTCTTGTTTATGAATACATGGAAAATGGAAGTCTAGAAGACTATCTTCTAAAAAAAAATGGAAAACCACCACTTCCTTGGTTTTTTCGATTTCGTATAGTTTTTGAAATGGCTTGTGGGCTCTCATTCTTGCATAATTCAAAGCCAGAGCCTATTGTCCATCGAGATATAAAACCTGGCAATGTCTTGTTAGACAGAAATTATGTGAGCAAAATTGCAGATGTTGGGCTGGCTAAACTCCTTGTAGAAGTCGTGCCTGACAATGTCACAGAGTACAGAGAATCAATTCTTGCCGGTACTCTGCATTACATGGACCCAGAGTATCAGAGAACTGGCACTGTCAGACCAAAATCAGATGTATATGCTTTTGGAGTTATAACTCTCCAATTGATAACTGGTCGACATGCGCGTGGACTCATTGTGACTGTTGAAGATGCAATTACAAATGGCTCCTTCCGTGATATTTTAGATCCATCAGCTGGAGATTGGCCACTGGATGAGACAGTGGAATTGGCTCAAGTAGCCCTTAAATGCACTGCACTCAGATGCAGAGATAGACCAGAGATTGATACTGAAGTTCTTCCAATGCTCCAAAGATTTTCTGATGCGGCAAATGCTAGTGCAAGGATGGGAAGAAATAGTGTAAGTGCGCCAAGCCAGTATTATTGTCCAATCCTTCAGGAAATCATGGATGATCCATATATTGCTGCGGATGGGTTCACTTATGAGTACGTAGCAATCAAGGCATGGCTCAGCAAACACAATGTGTCACCCATGACAAAGCTTAAACTTCAGCATTCTGTGTTGACTCCAAACCATACTTTACGTTCAGCCATTCAGGAGTGGAAGTCTGGAGTGACCTTTTGA

>Glyma.17g052800.2 sequence-type=CDS polypeptide=Glyma.17g052800.2.p locus=Glyma.17g052800 ID=Glyma.17g052800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCCACACCGTCGCGGAGATCGGTTGCCGTTGCCGTGAGCGGCGGGTCCAAGGGTAGCCGGCGAGCAGTGCAGTGGGCTGCGGACAATTTGGTCCCTCAAGCCGATAGGTTCATCTTAGTTCACGTCATCCCTCGAATCACTTCAATTGCAACACCAACTGGAGAGTATATTCCTATTTCCGAAGCAGACGCCGATGTGTTTGCAGCTTCTGTGCTGGATGCGAAACTAAAATCTGAACAAATCTTTGTTCCGTTCAAGAAACTCTGTGATTCAAACACGATGGAAACAGTACTGCTAGAAGATGACAATGCTGCAGAAGCACTTCTTAGCTTTATTTCGGAGTCCGGGTCCCAAATATTAGTGCTGGGTTCTGACTCCTCAAATTTCATAACAAGGAAGCTAAAAGGACCTGGGATACCAACTACCATTCTAAGATGTGCTCCTGACAGTTGTGATGTATATATTGTAGCTAGAGATAGAATTATATCCAAGTTGGCTGACTTTTCATCTTCACGTTCTCATGAGACTAGCCCTAGGTACTTCTTGTCTACTAAAGTAAATAAAGAGGACAATGGCATTGGCAGAGAAATGTCTGGAATTAGTTCATCCTCAAATGAACCTAAAATTCTAAGGAATTTCCGGTTTTTATCCATATCAGAGCGTAGTTACATTGGTCTGCAATCATCTAGTCGTAGGAATTCTTTTGAAAATTCTACCAAAAATGAAGAACAAAATTCAGAAAACTGTGGAGATGATATTGAAACTATCAGCCTCCACTCATTTGATTCCATTGCTTCTGCACAACGTGAACAGTTAGTCATGCAAGAAGAAGTGGAACGGCTGCAGCTGGAGTTGCAAAATACTATCACCATGTACAAACAGGTCTGTGAAGAACTGGTTCAAGCTCAAAACCAGGCCCTTTTACTTTCTTCTGAATCTCTTGAAGAAACTAAAATAGTTAATGCTTCCTTAAAAAGAGAGGAGATTTTGAGAAAGTTTGCTGCTGAAGAGAAAACAAAGTACTTAAAAGTCATGAAGGAGCTTGAGGAGGCGAAAAATAAGTTTTCCAAAGAGTCATATGAAAGACAGATGGCTGAACTTGATGTCCTTAGAGAATCAATAGAAAGACAGAGAATTGTGGATACATTGCTCTCAAATGACAGGAGATACAGAAAGTACACCATGGATGAAATCAAGCTAGCAACGAACTTTTTTGCTGAGGACTTGATAATTGGTGAAGGAGGATATGGGAAAGTTTACAAGTGTAATCTTGATCACACACCAGTAGCTGTAAAGGTTCTGCACCAGGACGCAATCAACAAGAAAGAGGAGTTTCTAAAAGAGGTTGAGATTCTTAGTCAACTACATCATCCTAATATGGTATTGTTACTTGGAGCCTGTCCTGAGAGTGGCTGTCTTGTTTATGAATACATGGAAAATGGAAGTCTAGAAGACTATCTTCTAAAAAAAAATGGAAAACCACCACTTCCTTGGTTTTTTCGATTTCGTATAGTTTTTGAAATGGCTTGTGGGCTCTCATTCTTGCATAATTCAAAGCCAGAGCCTATTGTCCATCGAGATATAAAACCTGGCAATGTCTTGTTAGACAGAAATTATGTGAGCAAAATTGCAGATGTTGGGCTGGCTAAACTCCTTGTAGAAGTCGTGCCTGACAATGTCACAGAGTACAGAGAATCAATTCTTGCCGGTACTCTGCATTACATGGACCCAGAGTATCAGAGAACTGGCACTGTCAGACCAAAATCAGATGTATATGCTTTTGGAGTTATAACTCTCCAATTGATAACTGGTCGACATGCGCGTGGACTCATTGTGACTGTTGAAGATGCAATTACAAATGGCTCCTTCCGTGATATTTTAGATCCATCAGCTGGAGATTGGCCACTGGATGAGACAGTGGAATTGGCTCAAGTAGCCCTTAAATGCACTGCACTCAGATGCAGAGATAGACCAGAGATTGATACTGAAGTTCTTCCAATGCTCCAAAGATTTTCTGATGCGGCAAATGCTAGTGCAAGGATGGGAAGAAATAGTGTAAGTGCGCCAAGCCAGTATTATTGTCCAATCCTTCAGGAAATCATGGATGATCCATATATTGCTGCGGATGGGTTCACTTATGAGTACGTAGCAATCAAGGCATGGCTCAGCAAACACAATGTGTCACCCATGACAAAGCTTAAACTTCAGCATTCTGTGTTGACTCCAAACCATACTTTACGTTCAGCCATTCAGGAGTGGAAGTCTGGAGTGACCTTTTGA
Predicted protein sequences of Glyma.17g052800
>Glyma.17g052800.1.p sequence-type=predicted peptide transcript=Glyma.17g052800.1 locus=Glyma.17g052800 ID=Glyma.17g052800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSTPSRRSVAVAVSGGSKGSRRAVQWAADNLVPQADRFILVHVIPRITSIATPTGEYIPISEADADVFAASVLDAKLKSEQIFVPFKKLCDSNTMETVLLEDDNAAEALLSFISESGSQILVLGSDSSNFITRKLKGPGIPTTILRCAPDSCDVYIVARDRIISKLADFSSSRSHETSPRYFLSTKVNKEDNGIGREMSGISSSSNEPKILRNFRFLSISERSYIGLQSSSRRNSFENSTKNEEQNSENCGDDIETISLHSFDSIASAQREQLVMQEEVERLQLELQNTITMYKQVCEELVQAQNQALLLSSESLEETKIVNASLKREEILRKFAAEEKTKYLKVMKELEEAKNKFSKESYERQMAELDVLRESIERQRIVDTLLSNDRRYRKYTMDEIKLATNFFAEDLIIGEGGYGKVYKCNLDHTPVAVKVLHQDAINKKEEFLKEVEILSQLHHPNMVLLLGACPESGCLVYEYMENGSLEDYLLKKNGKPPLPWFFRFRIVFEMACGLSFLHNSKPEPIVHRDIKPGNVLLDRNYVSKIADVGLAKLLVEVVPDNVTEYRESILAGTLHYMDPEYQRTGTVRPKSDVYAFGVITLQLITGRHARGLIVTVEDAITNGSFRDILDPSAGDWPLDETVELAQVALKCTALRCRDRPEIDTEVLPMLQRFSDAANASARMGRNSVSAPSQYYCPILQEIMDDPYIAADGFTYEYVAIKAWLSKHNVSPMTKLKLQHSVLTPNHTLRSAIQEWKSGVTF*

>Glyma.17g052800.2.p sequence-type=predicted peptide transcript=Glyma.17g052800.2 locus=Glyma.17g052800 ID=Glyma.17g052800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSTPSRRSVAVAVSGGSKGSRRAVQWAADNLVPQADRFILVHVIPRITSIATPTGEYIPISEADADVFAASVLDAKLKSEQIFVPFKKLCDSNTMETVLLEDDNAAEALLSFISESGSQILVLGSDSSNFITRKLKGPGIPTTILRCAPDSCDVYIVARDRIISKLADFSSSRSHETSPRYFLSTKVNKEDNGIGREMSGISSSSNEPKILRNFRFLSISERSYIGLQSSSRRNSFENSTKNEEQNSENCGDDIETISLHSFDSIASAQREQLVMQEEVERLQLELQNTITMYKQVCEELVQAQNQALLLSSESLEETKIVNASLKREEILRKFAAEEKTKYLKVMKELEEAKNKFSKESYERQMAELDVLRESIERQRIVDTLLSNDRRYRKYTMDEIKLATNFFAEDLIIGEGGYGKVYKCNLDHTPVAVKVLHQDAINKKEEFLKEVEILSQLHHPNMVLLLGACPESGCLVYEYMENGSLEDYLLKKNGKPPLPWFFRFRIVFEMACGLSFLHNSKPEPIVHRDIKPGNVLLDRNYVSKIADVGLAKLLVEVVPDNVTEYRESILAGTLHYMDPEYQRTGTVRPKSDVYAFGVITLQLITGRHARGLIVTVEDAITNGSFRDILDPSAGDWPLDETVELAQVALKCTALRCRDRPEIDTEVLPMLQRFSDAANASARMGRNSVSAPSQYYCPILQEIMDDPYIAADGFTYEYVAIKAWLSKHNVSPMTKLKLQHSVLTPNHTLRSAIQEWKSGVTF*






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