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Report for Sequence Feature Glyma.17g051300

Feature Type:gene_model
Chromosome:Gm17
Start:3893739
stop:3899823
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g051300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G13640.1AT phospholipid:diacylglycerol acyltransferase JGI N/AIEA
GO:0006629GO-bp lipid metabolic process EnsemblGenomesN/AIEA
GO:0006629GO-bp lipid metabolic process JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0008374GO-mf O-acyltransferase activity EnsemblGenomesN/AIEA
GO:0008374GO-mf O-acyltransferase activity JGI N/AIEA
PTHR11440Panther LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED JGI N/AIEA
PTHR11440:SF6Panther JGI N/AIEA
PF02450PFAM Lecithin:cholesterol acyltransferase JGI N/AIEA
PWY-7416SoyCyc9 phospholipid remodeling (phosphatidylcholine, yeast) Plant Metabolic Network ISS
TRIGLSYN-PWYSoyCyc9 diacylglycerol and triacylglycerol biosynthesis Plant Metabolic Network ISS
GN7V-49217SoyCyc9-rxn phospholipid:diacylglycerol acyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.17g051300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g051300
ParalogEvidenceComments
Glyma.13g108100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g051300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g05910 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.17g051300
>Glyma.17g051300.2 sequence-type=transcript locus=Glyma.17g051300 ID=Glyma.17g051300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATGTCCTTAGTATCATTAATTGTAAGGCAGAATTTTTACACACACACAAGTTGATTTTGGGCTGAACCTTTTTCACTGGCACTTATTGAAGTCCATCAGTCTGACAGAGTTTGGGGAGTTTGATTCAAATGTTCAATGATTACCATTATGCTGGGTTGAGCACATGTCACTAGATAATGAAACAGGACTAGACCATCCAGGCATTAGAGTTAGGCCTGTGTCTGGACTTGTAGCAGCTGATTATTTTGCACCTGGTTATTTTGTCTGGGCAGTTCTAATTGCTAATTTAGCTCGCATTGGGTATGAGGAGAAAAACATGTATATGGCTGCTTATGATTGGAGAATTTCATTTCAGAATACAGAGGTCAGGGATCAAACTTTGAGCAGGATGAAAAGTAATATAGAACTCATGGTGGCTACTAATGGTGGTAATAAGGTGGTTGTTATTCCACATTCAATGGGTGTTTTGTACTTTTTGCATTTTATGAAATGGGTTGAGGCACCAGCACCAATGGGTGGAGGGGGTGGGTCAGATTGGTGTGCCAAACATATTAAAGCAGTGATGAACATTGGGGGACCTTTTCTTGGTGTTCCAAAATCAGTCGCAGGACTTTTCTCTATAGAAGCCAGGGATATTGCTGTTGCCAGGACTTTCGCACCAGGTTTTTGGGATAAGGATGTTTTTGGTCTTAAAACTTTACAGCATCTAATGCGGATGACCCGAACGTGGGATTCAACCATGTCAATGATACCCAAAGGTGGGGATACTATATGGGGTGGCCTTGATTGGTCAGCTGATGTATCCTATAACTGCAGTGTAAAGAAGAACAAGAACAATGATACTTACGGTGCATTTCAAAATGGCAAAGAGAATCTTGGGTTTATGAAAAATATAAATTATGGGAGACTCATATCGTTTGGGAAAGATATAGCTGATTTGCACTCCTCCAAGCTTGAGAGGTTGGATTTTAGGGGTGCTCTTAAGGGTAGGAACCTTGCAAACACATCTAACTGTGATGTGTGGACAGAGTACCATGACATGGGTGTTGATGGAATCAAAGCTGTTACAGATTACAAAGCTTACACAGCTGATTCAATTTTGGATCTACTTCATTTTGTTGCCCCCAAGATGATGAAGCGCGGGGATGCTCATTTTTCTTATGGGATTGCTGATAATTTGGATGATCAGAAATACAAACATTACAAATATTGGTCTAACCCCTTGGAAACAAGATTACCAAATGCTCCAGATATGGAGATTTACTCTATGTATGGGGTTGGGATCCCTACAGAAAGAGCCTATGTCTACAAGTTAACTCCTCAATCTGAATGCCACATTCCATTTCAGATTGACACCTCAGCAGATGGTGGAAATGAGTACACATGTCTAAGGGATGGAGTTTACAGTTCTGATGGTGATGAAACTGTTCCTGTTTTAAGTGCTGGTTTCATGTGCGCAAAAGGTTGGCGGGGAAGAACCCGCTTTAATCCTTCAGGAATCCAGACATTCATAAGGGAGTATGATCATGCCCCTCCAGCTAATCTTCTAGAAGGTAGGGGAACTCAGAGTGGCGCTCATGTTGATATATTGGGTAACTTTGCCTTACTTGAAGATATTATACGAGTAGCAGCTGGAGCCTCTGGCAAGGACTTGGGTGGAGATAGAGTGCACTCCGATATTTTCAAATGGTCTGAAAAGATCAATTTGAAGCTCTAGATTCACATGGTAACCGATTACTATCTTCACATCATTACTTTAGTACTTGATAGAATCCTATCTGCTTCAACTGTTGACTGTTGTGCTTTAAGATAGAGCTGAAGGTATGAGATCTGGAGCTGATAGACCAGTCGCAGTGACAGCTTGCTTCTTACTCGGATTTTATCTATAGAATTTCATTGTTTCGGGAAAGTGTTGAATCTGTTTACAACCCCCATCCCCAAGAAAAAAAATTATACCAAGCTCTTAGTTTAGGTGCATGATTCATGCTTGACGAGAATTTTGTTGATTGCATTCATTGATTTGATTATTGTCAAGTGTATTGGTGTTAGTCTGCTCCCGTTTTCACTCTACTAATTTTTTATGCGCTGCACGGACTACATTCTCTTGTCGGTCAGAAGTTTTGAAAAGATTGAATCCAAGCCTCAAGTATAGGAATAACAGTGTCGTAGTGTAGTAGttgttattattattattattatATCCTAACACTGGAGTTAGTTAGGAATATTGTTTGTTATATCACGTTGTACCTTCCAATTTCCATTATGATGGGTTTATAAATGCATGGTTTTAATTTGAAACCAAGATTTACTGTAAATTGGTGTAAACAATAGATTATTATTGATGAAGTTGG
Coding sequences of Glyma.17g051300
>Glyma.17g051300.1 sequence-type=CDS polypeptide=Glyma.17g051300.1.p locus=Glyma.17g051300 ID=Glyma.17g051300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGTTTTTACGACGGAGAAAGGCCCCTGCGAATCCCTCGCCAAACGAGGAGAAAGAGAAGGATAAGAAAAAGGTTATTAAGGAGAAGAAGATTATCAAAGGCGAAAATATAATAATAAAGAGATGGTCGTGCGTGGATAGCTGTTGTTGGTTCGTTGGACTCATTTGTTCAATTTGGTGGTTTTTGCTCTTTCTATACAATGCAATGCCGGCGTCGTTTCCTCAGTACGTGACGGAGGCGATAACCGGGCCGTTGCCGGATCCTCCCGGCGTGAAGCTCAGGAAGGAGGGCTTGACGGTGAAGCACCCGGTGGTTTTCGTTCCCGGAATTGTTACCGGCGGGTTGGAACTCTGGGAGGGTCGCCAGTGTGCGGATGGGTTGTTCAGGAAGAGGTTGTGGGGTGGCACCTTTGGGGAATTGTACAAAAGACCATTATGCTGGGTTGAGCACATGTCACTAGATAATGAAACAGGACTAGACCATCCAGGCATTAGAGTTAGGCCTGTGTCTGGACTTGTAGCAGCTGATTATTTTGCACCTGGTTATTTTGTCTGGGCAGTTCTAATTGCTAATTTAGCTCGCATTGGGTATGAGGAGAAAAACATGTATATGGCTGCTTATGATTGGAGAATTTCATTTCAGAATACAGAGGTCAGGGATCAAACTTTGAGCAGGATGAAAAGTAATATAGAACTCATGGTGGCTACTAATGGTGGTAATAAGGTGGTTGTTATTCCACATTCAATGGGTGTTTTGTACTTTTTGCATTTTATGAAATGGGTTGAGGCACCAGCACCAATGGGTGGAGGGGGTGGGTCAGATTGGTGTGCCAAACATATTAAAGCAGTGATGAACATTGGGGGACCTTTTCTTGGTGTTCCAAAATCAGTCGCAGGACTTTTCTCTATAGAAGCCAGGGATATTGCTGTTGCCAGGACTTTCGCACCAGGTTTTTGGGATAAGGATGTTTTTGGTCTTAAAACTTTACAGCATCTAATGCGGATGACCCGAACGTGGGATTCAACCATGTCAATGATACCCAAAGGTGGGGATACTATATGGGGTGGCCTTGATTGGTCAGCTGATGTATCCTATAACTGCAGTGTAAAGAAGAACAAGAACAATGATACTTACGGTGCATTTCAAAATGGCAAAGAGAATCTTGGGTTTATGAAAAATATAAATTATGGGAGACTCATATCGTTTGGGAAAGATATAGCTGATTTGCACTCCTCCAAGCTTGAGAGGTTGGATTTTAGGGGTGCTCTTAAGGGTAGGAACCTTGCAAACACATCTAACTGTGATGTGTGGACAGAGTACCATGACATGGGTGTTGATGGAATCAAAGCTGTTACAGATTACAAAGCTTACACAGCTGATTCAATTTTGGATCTACTTCATTTTGTTGCCCCCAAGATGATGAAGCGCGGGGATGCTCATTTTTCTTATGGGATTGCTGATAATTTGGATGATCAGAAATACAAACATTACAAATATTGGTCTAACCCCTTGGAAACAAGATTACCAAATGCTCCAGATATGGAGATTTACTCTATGTATGGGGTTGGGATCCCTACAGAAAGAGCCTATGTCTACAAGTTAACTCCTCAATCTGAATGCCACATTCCATTTCAGATTGACACCTCAGCAGATGGTGGAAATGAGTACACATGTCTAAGGGATGGAGTTTACAGTTCTGATGGTGATGAAACTGTTCCTGTTTTAAGTGCTGGTTTCATGTGCGCAAAAGGTTGGCGGGGAAGAACCCGCTTTAATCCTTCAGGAATCCAGACATTCATAAGGGAGTATGATCATGCCCCTCCAGCTAATCTTCTAGAAGGTAGGGGAACTCAGAGTGGCGCTCATGTTGATATATTGGGTAACTTTGCCTTACTTGAAGATATTATACGAGTAGCAGCTGGAGCCTCTGGCAAGGACTTGGGTGGAGATAGAGTGCACTCCGATATTTTCAAATGGTCTGAAAAGATCAATTTGAAGCTCTAG

>Glyma.17g051300.2 sequence-type=CDS polypeptide=Glyma.17g051300.2.p locus=Glyma.17g051300 ID=Glyma.17g051300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCACTAGATAATGAAACAGGACTAGACCATCCAGGCATTAGAGTTAGGCCTGTGTCTGGACTTGTAGCAGCTGATTATTTTGCACCTGGTTATTTTGTCTGGGCAGTTCTAATTGCTAATTTAGCTCGCATTGGGTATGAGGAGAAAAACATGTATATGGCTGCTTATGATTGGAGAATTTCATTTCAGAATACAGAGGTCAGGGATCAAACTTTGAGCAGGATGAAAAGTAATATAGAACTCATGGTGGCTACTAATGGTGGTAATAAGGTGGTTGTTATTCCACATTCAATGGGTGTTTTGTACTTTTTGCATTTTATGAAATGGGTTGAGGCACCAGCACCAATGGGTGGAGGGGGTGGGTCAGATTGGTGTGCCAAACATATTAAAGCAGTGATGAACATTGGGGGACCTTTTCTTGGTGTTCCAAAATCAGTCGCAGGACTTTTCTCTATAGAAGCCAGGGATATTGCTGTTGCCAGGACTTTCGCACCAGGTTTTTGGGATAAGGATGTTTTTGGTCTTAAAACTTTACAGCATCTAATGCGGATGACCCGAACGTGGGATTCAACCATGTCAATGATACCCAAAGGTGGGGATACTATATGGGGTGGCCTTGATTGGTCAGCTGATGTATCCTATAACTGCAGTGTAAAGAAGAACAAGAACAATGATACTTACGGTGCATTTCAAAATGGCAAAGAGAATCTTGGGTTTATGAAAAATATAAATTATGGGAGACTCATATCGTTTGGGAAAGATATAGCTGATTTGCACTCCTCCAAGCTTGAGAGGTTGGATTTTAGGGGTGCTCTTAAGGGTAGGAACCTTGCAAACACATCTAACTGTGATGTGTGGACAGAGTACCATGACATGGGTGTTGATGGAATCAAAGCTGTTACAGATTACAAAGCTTACACAGCTGATTCAATTTTGGATCTACTTCATTTTGTTGCCCCCAAGATGATGAAGCGCGGGGATGCTCATTTTTCTTATGGGATTGCTGATAATTTGGATGATCAGAAATACAAACATTACAAATATTGGTCTAACCCCTTGGAAACAAGATTACCAAATGCTCCAGATATGGAGATTTACTCTATGTATGGGGTTGGGATCCCTACAGAAAGAGCCTATGTCTACAAGTTAACTCCTCAATCTGAATGCCACATTCCATTTCAGATTGACACCTCAGCAGATGGTGGAAATGAGTACACATGTCTAAGGGATGGAGTTTACAGTTCTGATGGTGATGAAACTGTTCCTGTTTTAAGTGCTGGTTTCATGTGCGCAAAAGGTTGGCGGGGAAGAACCCGCTTTAATCCTTCAGGAATCCAGACATTCATAAGGGAGTATGATCATGCCCCTCCAGCTAATCTTCTAGAAGGTAGGGGAACTCAGAGTGGCGCTCATGTTGATATATTGGGTAACTTTGCCTTACTTGAAGATATTATACGAGTAGCAGCTGGAGCCTCTGGCAAGGACTTGGGTGGAGATAGAGTGCACTCCGATATTTTCAAATGGTCTGAAAAGATCAATTTGAAGCTCTAG
Predicted protein sequences of Glyma.17g051300
>Glyma.17g051300.1.p sequence-type=predicted peptide transcript=Glyma.17g051300.1 locus=Glyma.17g051300 ID=Glyma.17g051300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSFLRRRKAPANPSPNEEKEKDKKKVIKEKKIIKGENIIIKRWSCVDSCCWFVGLICSIWWFLLFLYNAMPASFPQYVTEAITGPLPDPPGVKLRKEGLTVKHPVVFVPGIVTGGLELWEGRQCADGLFRKRLWGGTFGELYKRPLCWVEHMSLDNETGLDHPGIRVRPVSGLVAADYFAPGYFVWAVLIANLARIGYEEKNMYMAAYDWRISFQNTEVRDQTLSRMKSNIELMVATNGGNKVVVIPHSMGVLYFLHFMKWVEAPAPMGGGGGSDWCAKHIKAVMNIGGPFLGVPKSVAGLFSIEARDIAVARTFAPGFWDKDVFGLKTLQHLMRMTRTWDSTMSMIPKGGDTIWGGLDWSADVSYNCSVKKNKNNDTYGAFQNGKENLGFMKNINYGRLISFGKDIADLHSSKLERLDFRGALKGRNLANTSNCDVWTEYHDMGVDGIKAVTDYKAYTADSILDLLHFVAPKMMKRGDAHFSYGIADNLDDQKYKHYKYWSNPLETRLPNAPDMEIYSMYGVGIPTERAYVYKLTPQSECHIPFQIDTSADGGNEYTCLRDGVYSSDGDETVPVLSAGFMCAKGWRGRTRFNPSGIQTFIREYDHAPPANLLEGRGTQSGAHVDILGNFALLEDIIRVAAGASGKDLGGDRVHSDIFKWSEKINLKL*

>Glyma.17g051300.2.p sequence-type=predicted peptide transcript=Glyma.17g051300.2 locus=Glyma.17g051300 ID=Glyma.17g051300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSLDNETGLDHPGIRVRPVSGLVAADYFAPGYFVWAVLIANLARIGYEEKNMYMAAYDWRISFQNTEVRDQTLSRMKSNIELMVATNGGNKVVVIPHSMGVLYFLHFMKWVEAPAPMGGGGGSDWCAKHIKAVMNIGGPFLGVPKSVAGLFSIEARDIAVARTFAPGFWDKDVFGLKTLQHLMRMTRTWDSTMSMIPKGGDTIWGGLDWSADVSYNCSVKKNKNNDTYGAFQNGKENLGFMKNINYGRLISFGKDIADLHSSKLERLDFRGALKGRNLANTSNCDVWTEYHDMGVDGIKAVTDYKAYTADSILDLLHFVAPKMMKRGDAHFSYGIADNLDDQKYKHYKYWSNPLETRLPNAPDMEIYSMYGVGIPTERAYVYKLTPQSECHIPFQIDTSADGGNEYTCLRDGVYSSDGDETVPVLSAGFMCAKGWRGRTRFNPSGIQTFIREYDHAPPANLLEGRGTQSGAHVDILGNFALLEDIIRVAAGASGKDLGGDRVHSDIFKWSEKINLKL*






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