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Report for Sequence Feature Glyma.17g050300

Feature Type:gene_model
Chromosome:Gm17
Start:3825124
stop:3827943
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g050300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G28230.1AT TATA-binding related factor (TRF) of subunit 20 of Mediator complex JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006357GO-bp regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0006357GO-bp regulation of transcription from RNA polymerase II promoter JGI N/AIEA
GO:1903508GO-bp positive regulation of nucleic acid-templated transcription EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0016592GO-cc mediator complex EnsemblGenomesN/AIEA
GO:0016592GO-cc mediator complex JGI N/AIEA
GO:0003712GO-mf transcription cofactor activity EnsemblGenomesN/AIEA
GO:0003713GO-mf transcription coactivator activity EnsemblGenomesN/AIEA
PTHR12465Panther UBIQUITIN SPECIFIC PROTEASE HOMOLOG 49 JGI N/AIEA
PF08612PFAM TATA-binding related factor (TRF) of subunit 20 of Mediator complex JGI N/AIEA

Proteins Associated with Glyma.17g050300
LocusGene SymbolProtein Name
MED20-2 Mediator Complex 20 gene 2

Expression Patterns of Glyma.17g050300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g050300 not represented in the dataset
Glyma.17g050300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g050300
ParalogEvidenceComments
Glyma.13g109300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g050300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g05810 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.17g050300
>Glyma.17g050300.2 sequence-type=transcript locus=Glyma.17g050300 ID=Glyma.17g050300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTTGAGTGTCGGATTCCATACAGGCACCTCAATGTGGCCATGCAAGCTCCTTGTTGCCGACGTGCTCCGCCCTTGAAATCGTCATGGCGGAAGAGGAAGGAGAATGTGAGTCTGTCTCTTCCGGCGAGCATGCCCATCAGATGTATTCTGCATTGGCAACCGAACCAAGGAAGCGTTGTGAACAGCCAAGTCCTGAATGAGATCTCGCAGTGCGTCGAAAGCCTCAACGGCGTCAAAGAAGGAAGATGCAAAGCCTCCCTCACTTTCTACAGACCCAATTTACGAGACCAGTCGGTGACCATCGATTTCCCGCGCGATTTTCTGGGGATATCGATGCTGGAGCAGCCGAACAAATACTACTTCATCATTCGCGGCCAGAAGATTGTTCTGGAGGCCGATTCTTCTATCTTGCTTATCATGGAGAAACTCCAGTCCTACAAGTCCAAAGTCGCCCTTCATTTCGAGGGAGTGCTGTATAAATTGGGTGACTTTCAGATGAGAGTCATTAAAGTTGTTCCCAGTCAAGCAGAAAGTCTCAGAGGAATTATGATTGAGATTGAGTATCTCCCTATTTCGTCAGTTGAAAAATCCAAGCAAATTTTGGAAGAGTTCATTGATATATGGAAAGAAGTCGTGTCTAAAAAATCATTAGCTGGTCAGTTCATGCATACAGAACCAAATTATGCAGAATATGGGCTTTCTGACAATTATACCTCTCAGCATACAGCTGTTCAGTATGCTGCTGCGTTGGCCCAACTGATTCAATCTGCACAGTTACGGAATTAGGACCTTTGTGGAGGTGAACAACCAACCGTCTGGGTTCAATAATTGTGTGATTGCAGGTATCTAACTCAATTGTGTTTAGCTGTTTGAAGTTTGAAGCCGAATTATCAAGTTGTGAGGGGAATGGCAGGTTCATACAAGGTGTGGAGTGGTGGTAGATTGCGTTGATGCTCTATATTCTGTTGTATAATATATTCATCAAAGGCAACATATATGTTTTGTTTCTCTTGGTAGTTGGTATCAGAATGTAAAATGTAATTGTTAAAGTAATCTTTTCGGGTCTCGTTTTGTTTCCTAAATGATCTGGAGAAATGATCAGTAGACAATTATAAGAAATATTCGGCATATTACTTGAGTGACTGAATGAAATTGGCTTTTTAAATTTTAGTCC

>Glyma.17g050300.3 sequence-type=transcript locus=Glyma.17g050300 ID=Glyma.17g050300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTTGAGTGTCGGATTCCATACAGGCACCTCAATGTGGCCATGCAAGCTCCTTGTTGCCGACGTGCTCCGCCCTTGAAATCGTCATGGCGGTTAGTTTCTAAATCGGATCACCATCACCTGAAGCCAAAAAGTTTTTATTTGAATTTTGTTATGTTTTCAGTGTTTTAAAAATAATGGCTTTATCTTTTAATGAGGGATAAAAATATATAATGTAAAAATAAAGAGTCCCGTTGGTTTATAAAATTGAAAGGAAGAGGAAGGAGAATGTGAGTCTGTCTCTTCCGGCGAGCATGCCCATCAGATGTATTCTGCATTGGCAACCGAACCAAGGAAGCGTTGTGAACAGCCAAGTCCTGAATGAGATCTCGCAGTGCGTCGAAAGCCTCAACGGCGTCAAAGAAGGAAGATGCAAAGCCTCCCTCACTTTCTACAGACCCAATTTACGAGACCAGTCGGTGACCATCGATTTCCCGCGCGATTTTCTGGGGATATCGATGCTGGAGCAGCCGAACAAATACTACTTCATCATTCGCGGCCAGAAGATTGTTCTGGAGGCCGATTCTTCTATCTTGCTTATCATGGAGAAACTCCAGTCCTACAAGTCCAAAGTCGCCCTTCATTTCGAGGGAGTGCTGTATAAATTGGGTGACTTTCAGATGAGAGTCATTAAAGTTGTTCCCAGTCAAGCAGAAAGTCTCAGAGGAATTATGATTGAGATTGAGTATCTCCCTATTTCGTCAGTTGAAAAATCCAAGCAAATTTTGGAAGAGTTCATTGATATATGGAAAGAAGTCGTGTCTAAAAAATCATTAGCTGGTCAGTTCATGCATACAGAACCAAATTATGCAGAATATGGGCTTTCTGACAATTATACCTCTCAGCATACAGCTGTTCAGTATGCTGCTGCGTTGGCCCAACTGATTCAATCTGCACAGTTACGGAATTAGGACCTTTGTGGAGCTGTTTGAAGTTTGAAGCCGAATTATCAAGTTGTGAGGGGAATGGCAGGTTCATACAAGGTGTGGAGTGGTGGTAGATTGCGTTGATGCTCTATATTCTGTTGTATAATATATTCATCAAAGGCAACATATATGTTTTGTTTCTCTTGGTAGTTGGTATCAGAATGTAAAATGTAATTGTTAAAGTAATCTTTTCGGGTCTCGTTTTGTTTCCTAAATGATCTGGAGAAATGATCAGTAGACAATTATAAGAAATATTCGGCATATTACTTGAGTGACTGAATGAAATTGGCTTTTTAAATTTTAGTCC

>Glyma.17g050300.4 sequence-type=transcript locus=Glyma.17g050300 ID=Glyma.17g050300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
CAGGCACCTCAATGTGGCCATGCAAGCTCCTTGTTGCCGACGTGCTCCGCCCTTGAAATCGTCATGGCGGTTAGTTTCTAAATCGGATCACCATCACCTGAAGCCAAAAAGTTTTTATTTGAATTTTGTTATGTTTTCAGTGTTTTAAAAATAATGGCTTTATCTTTTAATGAGGGATAAAAATATATAATGTAAAAATAAAGAGTCCCGTTGGTTTATAAAATTGAAAGGAAGAGGAAGGAGAATGTGAGTCTGTCTCTTCCGGCGAGCATGCCCATCAGATGTATTCTGCATTGGCAACCGAACCAAGGAAGCGTTGTGAACAGCCAAGTCCTGAATGAGATCTCGCAGTGCGTCGAAAGCCTCAACGGCGTCAAAGAAGGAAGATGCAAAGCCTCCCTCACTTTCTACAGACCCAATTTACGAGACCAGTCGGTGACCATCGATTTCCCGCGCGATTTTCTGGGGATATCGATGCTGGAGCAGCCGAACAAATACTACTTCATCATTCGCGGCCAGAAGATTGTTCTGGAGGCCGATTCTTCTATCTTGCTTATCATGGAGAAACTCCAGTCCTACAAGTCCAAAGTCGCCCTTCATTTCGAGGGAGTGCTGTATAAATTGGGTGACTTTCAGATGAGAGTCATTAAAGTTGTTCCCAGTCAAGCAGAAAGTCTCAGAGGAATTATGATTGAGATTGAGTATCTCCCTATTTCGTCAGTTGAAAAATCCAAGCAAATTTTGGAAGAGTTCATTGATATATGGAAAGAAGTCGTGTCTAAAAAATCATTAGCTGGTCAGTTCATGCATACAGAACCAAATTATGCAGAATATGGGCTTTCTGACAATTATACCTCTCAGCATACAGCTGTTCAGTATGCTGCTGCGTTGGCCCAACTGATTCAATCTGCACAGTTACGGAATTAGGACCTTTGTGGAGGTGAACAACCAACCGTCTGGGTTCAATAATTGTGTGATTGCAGGTATCTAACTCAATTGTGTTTAGCTGTTTGAAGTTTGAAGCCGAATTATCAAGTTGTGAGGGGAATGGCAGGTTCATACAAGGTGTGGAGTGGTGGTAGATTGCGTTGATGCTCTATATTCTGTTGTATAATATATTCATCAAAGGCAACATATATGTTTTGTTTCTCTTGGTAGTTGGTATCAGAATGTAAAATGTAATTGTTAAAGTAATCTTTTCGGGTCTCGTTTTGTTTCCTAAATGATCTGGAGAAATGATCAGTAGACAATTATAAGAAATATTCGGCATATTACTTGAGTGACTGAATGAAATTGGCTTTTTAAATTTTAGTCC
Coding sequences of Glyma.17g050300
>Glyma.17g050300.1 sequence-type=CDS polypeptide=Glyma.17g050300.1.p locus=Glyma.17g050300 ID=Glyma.17g050300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAAGCTCCTTGTTGCCGACGTGCTCCGCCCTTGAAATCGTCATGGCGAGTCCCGTTGGTTTATAAAATTGAAAGGAAGAGGAAGGAGAATGTGAGTCTGTCTCTTCCGGCGAGCATGCCCATCAGATGTATTCTGCATTGGCAACCGAACCAAGGAAGCGTTGTGAACAGCCAAGTCCTGAATGAGATCTCGCAGTGCGTCGAAAGCCTCAACGGCGTCAAAGAAGGAAGATGCAAAGCCTCCCTCACTTTCTACAGACCCAATTTACGAGACCAGTCGGTGACCATCGATTTCCCGCGCGATTTTCTGGGGATATCGATGCTGGAGCAGCCGAACAAATACTACTTCATCATTCGCGGCCAGAAGATTGTTCTGGAGGCCGATTCTTCTATCTTGCTTATCATGGAGAAACTCCAGTCCTACAAGTCCAAAGTCGCCCTTCATTTCGAGGGAGTGCTGTATAAATTGGGTGACTTTCAGATGAGAGTCATTAAAGTTGTTCCCAGTCAAGCAGAAAGTCTCAGAGGAATTATGATTGAGATTGAGTATCTCCCTATTTCGTCAGTTGAAAAATCCAAGCAAATTTTGGAAGAGTTCATTGATATATGGAAAGAAGTCGTGTCTAAAAAATCATTAGCTGGTCAGTTCATGCATACAGAACCAAATTATGCAGAATATGGGCTTTCTGACAATTATACCTCTCAGCATACAGCTGTTCAGTATGCTGCTGCGTTGGCCCAACTGATTCAATCTGCACAGTTACGGAATTAG

>Glyma.17g050300.2 sequence-type=CDS polypeptide=Glyma.17g050300.2.p locus=Glyma.17g050300 ID=Glyma.17g050300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAAGCTCCTTGTTGCCGACGTGCTCCGCCCTTGAAATCGTCATGGCGGAAGAGGAAGGAGAATGTGAGTCTGTCTCTTCCGGCGAGCATGCCCATCAGATGTATTCTGCATTGGCAACCGAACCAAGGAAGCGTTGTGAACAGCCAAGTCCTGAATGAGATCTCGCAGTGCGTCGAAAGCCTCAACGGCGTCAAAGAAGGAAGATGCAAAGCCTCCCTCACTTTCTACAGACCCAATTTACGAGACCAGTCGGTGACCATCGATTTCCCGCGCGATTTTCTGGGGATATCGATGCTGGAGCAGCCGAACAAATACTACTTCATCATTCGCGGCCAGAAGATTGTTCTGGAGGCCGATTCTTCTATCTTGCTTATCATGGAGAAACTCCAGTCCTACAAGTCCAAAGTCGCCCTTCATTTCGAGGGAGTGCTGTATAAATTGGGTGACTTTCAGATGAGAGTCATTAAAGTTGTTCCCAGTCAAGCAGAAAGTCTCAGAGGAATTATGATTGAGATTGAGTATCTCCCTATTTCGTCAGTTGAAAAATCCAAGCAAATTTTGGAAGAGTTCATTGATATATGGAAAGAAGTCGTGTCTAAAAAATCATTAGCTGGTCAGTTCATGCATACAGAACCAAATTATGCAGAATATGGGCTTTCTGACAATTATACCTCTCAGCATACAGCTGTTCAGTATGCTGCTGCGTTGGCCCAACTGATTCAATCTGCACAGTTACGGAATTAG

>Glyma.17g050300.3 sequence-type=CDS polypeptide=Glyma.17g050300.3.p locus=Glyma.17g050300 ID=Glyma.17g050300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCCATCAGATGTATTCTGCATTGGCAACCGAACCAAGGAAGCGTTGTGAACAGCCAAGTCCTGAATGAGATCTCGCAGTGCGTCGAAAGCCTCAACGGCGTCAAAGAAGGAAGATGCAAAGCCTCCCTCACTTTCTACAGACCCAATTTACGAGACCAGTCGGTGACCATCGATTTCCCGCGCGATTTTCTGGGGATATCGATGCTGGAGCAGCCGAACAAATACTACTTCATCATTCGCGGCCAGAAGATTGTTCTGGAGGCCGATTCTTCTATCTTGCTTATCATGGAGAAACTCCAGTCCTACAAGTCCAAAGTCGCCCTTCATTTCGAGGGAGTGCTGTATAAATTGGGTGACTTTCAGATGAGAGTCATTAAAGTTGTTCCCAGTCAAGCAGAAAGTCTCAGAGGAATTATGATTGAGATTGAGTATCTCCCTATTTCGTCAGTTGAAAAATCCAAGCAAATTTTGGAAGAGTTCATTGATATATGGAAAGAAGTCGTGTCTAAAAAATCATTAGCTGGTCAGTTCATGCATACAGAACCAAATTATGCAGAATATGGGCTTTCTGACAATTATACCTCTCAGCATACAGCTGTTCAGTATGCTGCTGCGTTGGCCCAACTGATTCAATCTGCACAGTTACGGAATTAG

>Glyma.17g050300.4 sequence-type=CDS polypeptide=Glyma.17g050300.4.p locus=Glyma.17g050300 ID=Glyma.17g050300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCCATCAGATGTATTCTGCATTGGCAACCGAACCAAGGAAGCGTTGTGAACAGCCAAGTCCTGAATGAGATCTCGCAGTGCGTCGAAAGCCTCAACGGCGTCAAAGAAGGAAGATGCAAAGCCTCCCTCACTTTCTACAGACCCAATTTACGAGACCAGTCGGTGACCATCGATTTCCCGCGCGATTTTCTGGGGATATCGATGCTGGAGCAGCCGAACAAATACTACTTCATCATTCGCGGCCAGAAGATTGTTCTGGAGGCCGATTCTTCTATCTTGCTTATCATGGAGAAACTCCAGTCCTACAAGTCCAAAGTCGCCCTTCATTTCGAGGGAGTGCTGTATAAATTGGGTGACTTTCAGATGAGAGTCATTAAAGTTGTTCCCAGTCAAGCAGAAAGTCTCAGAGGAATTATGATTGAGATTGAGTATCTCCCTATTTCGTCAGTTGAAAAATCCAAGCAAATTTTGGAAGAGTTCATTGATATATGGAAAGAAGTCGTGTCTAAAAAATCATTAGCTGGTCAGTTCATGCATACAGAACCAAATTATGCAGAATATGGGCTTTCTGACAATTATACCTCTCAGCATACAGCTGTTCAGTATGCTGCTGCGTTGGCCCAACTGATTCAATCTGCACAGTTACGGAATTAG
Predicted protein sequences of Glyma.17g050300
>Glyma.17g050300.1.p sequence-type=predicted peptide transcript=Glyma.17g050300.1 locus=Glyma.17g050300 ID=Glyma.17g050300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQAPCCRRAPPLKSSWRVPLVYKIERKRKENVSLSLPASMPIRCILHWQPNQGSVVNSQVLNEISQCVESLNGVKEGRCKASLTFYRPNLRDQSVTIDFPRDFLGISMLEQPNKYYFIIRGQKIVLEADSSILLIMEKLQSYKSKVALHFEGVLYKLGDFQMRVIKVVPSQAESLRGIMIEIEYLPISSVEKSKQILEEFIDIWKEVVSKKSLAGQFMHTEPNYAEYGLSDNYTSQHTAVQYAAALAQLIQSAQLRN*

>Glyma.17g050300.2.p sequence-type=predicted peptide transcript=Glyma.17g050300.2 locus=Glyma.17g050300 ID=Glyma.17g050300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQAPCCRRAPPLKSSWRKRKENVSLSLPASMPIRCILHWQPNQGSVVNSQVLNEISQCVESLNGVKEGRCKASLTFYRPNLRDQSVTIDFPRDFLGISMLEQPNKYYFIIRGQKIVLEADSSILLIMEKLQSYKSKVALHFEGVLYKLGDFQMRVIKVVPSQAESLRGIMIEIEYLPISSVEKSKQILEEFIDIWKEVVSKKSLAGQFMHTEPNYAEYGLSDNYTSQHTAVQYAAALAQLIQSAQLRN*

>Glyma.17g050300.3.p sequence-type=predicted peptide transcript=Glyma.17g050300.3 locus=Glyma.17g050300 ID=Glyma.17g050300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPIRCILHWQPNQGSVVNSQVLNEISQCVESLNGVKEGRCKASLTFYRPNLRDQSVTIDFPRDFLGISMLEQPNKYYFIIRGQKIVLEADSSILLIMEKLQSYKSKVALHFEGVLYKLGDFQMRVIKVVPSQAESLRGIMIEIEYLPISSVEKSKQILEEFIDIWKEVVSKKSLAGQFMHTEPNYAEYGLSDNYTSQHTAVQYAAALAQLIQSAQLRN*

>Glyma.17g050300.4.p sequence-type=predicted peptide transcript=Glyma.17g050300.4 locus=Glyma.17g050300 ID=Glyma.17g050300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPIRCILHWQPNQGSVVNSQVLNEISQCVESLNGVKEGRCKASLTFYRPNLRDQSVTIDFPRDFLGISMLEQPNKYYFIIRGQKIVLEADSSILLIMEKLQSYKSKVALHFEGVLYKLGDFQMRVIKVVPSQAESLRGIMIEIEYLPISSVEKSKQILEEFIDIWKEVVSKKSLAGQFMHTEPNYAEYGLSDNYTSQHTAVQYAAALAQLIQSAQLRN*






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