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Report for Sequence Feature Glyma.17g049900

Feature Type:gene_model
Chromosome:Gm17
Start:3785988
stop:3788223
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g049900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G06050.1AT oxophytodienoate-reductase 3 JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0010181GO-mf FMN binding EnsemblGenomesN/AIEA
GO:0010181GO-mf FMN binding JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
KOG0134 KOG NADH:flavin oxidoreductase/12-oxophytodienoate reductase JGI N/AIEA
PTHR22893Panther NADH OXIDOREDUCTASE-RELATED JGI N/AIEA
PTHR22893:SF13Panther JGI N/AIEA
PF00724PFAM NADH:flavin oxidoreductase / NADH oxidase family JGI N/AIEA
PWY-735SoyCyc9 jasmonic acid biosynthesis Plant Metabolic Network ISS
GN7V-59190SoyCyc9-rxn 12-oxophytodienoate reductase Plant Metabolic Network ISS

Expression Patterns of Glyma.17g049900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g049900
ParalogEvidenceComments
Glyma.13g109800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g049900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g05770 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g049900
>Glyma.17g049900.1 sequence-type=CDS polypeptide=Glyma.17g049900.1.p locus=Glyma.17g049900 ID=Glyma.17g049900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGATAACTCCATTACCTTATTTTCTCCATACAAGATGGGGAAATTCAACCTCTCTCATAGGGTGGTATTGGCTCCCATGACCAGATGCAGAGCCCTCAATGGGATTCCATTGCCAGCGCATGCTCAATACTATACTCAAAGATCAACACTAGGTGGATTCCTCATCACTGAAGGCACCTTGATCTCTCCCACTTCTTCTGGATTTCCTCATGTTCCCGGGATATATTCAGATGAACAAGTAGAGGCATGGAGAAATGTAGTGGACGCCGTGCATGCCAAAGGCAGCATTATCTTCTGTCAACTCTGGCATGTTGGCCGTGCTTCACATCCAGTGTATCAGCCTGGTGGGGCTGCACCCATTTCGTCCACCAGCAAACCCATATCAGACAAGTGGAAAATTCTGATGCCCGATGGCTCCCATGGCTTCTACCCAGAGCCTCATGCTCTTACCACCTCTGAGATATCTGAAATAGTGCACCATTATCGCCAAGCAGCTATTAATGCAATTCGAGCAGGTTTTGATGGAATCGAGATTCATGGAGCACATGGGTATCTCATTGATCAATTCTTGAAGGATGCAATCAATGATAGAACAGATGAATATGGTGGATCACTAGAAAACCGGTGCAGGTTCTTAACGCAGGTGGTTGAAGCTATTGTCTCTGCAATTGGAGCGGAAAGAGTTGGTCTCAGAATTTCACCAGCAATTGATTTCAATGATGGCTTTGACTCTGACCCACTTGGGCTAGGCTTAGCAGTGATTGAGAGACTCAACAATTTGCAGAAACAAGTGAGCACAAAACTCGCTTATCTTCATGTTACTCAGCCTCGGTTCACACTCTTGGCGCAAACCGGGTCAGTGAGTGAAAAGGAAGAAGCTCATTTGATGGAGAAATGGAGAGAGGCTTATGAGGGAACATTGATGTGTAGTGGTGCTTTCACTAGGGACTCGGGAATGGAAGCTGTTGCTCAAGGCCATGCTGACTTGGTTTCCTATGGTCGTCTTTTCATCTCCAATCCAGACTTGGTTTTAAGGCTCAAGCTTCATGCACCTCTCACAAAGTATAACAGGAACACATTTTACACTCAAGATCCTGTTATAGGCTACACGGATTATCCTTTCCTCAACGGAACAACCTAA
Predicted protein sequences of Glyma.17g049900
>Glyma.17g049900.1.p sequence-type=predicted peptide transcript=Glyma.17g049900.1 locus=Glyma.17g049900 ID=Glyma.17g049900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADNSITLFSPYKMGKFNLSHRVVLAPMTRCRALNGIPLPAHAQYYTQRSTLGGFLITEGTLISPTSSGFPHVPGIYSDEQVEAWRNVVDAVHAKGSIIFCQLWHVGRASHPVYQPGGAAPISSTSKPISDKWKILMPDGSHGFYPEPHALTTSEISEIVHHYRQAAINAIRAGFDGIEIHGAHGYLIDQFLKDAINDRTDEYGGSLENRCRFLTQVVEAIVSAIGAERVGLRISPAIDFNDGFDSDPLGLGLAVIERLNNLQKQVSTKLAYLHVTQPRFTLLAQTGSVSEKEEAHLMEKWREAYEGTLMCSGAFTRDSGMEAVAQGHADLVSYGRLFISNPDLVLRLKLHAPLTKYNRNTFYTQDPVIGYTDYPFLNGTT*






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