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Report for Sequence Feature Glyma.17g048600

Feature Type:gene_model
Chromosome:Gm17
Start:3688017
stop:3691527
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g048600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G20635.1AT JGI N/AIEA
GO:0007186GO-bp G-protein coupled receptor signaling pathway EnsemblGenomesN/AIEA
GO:0007186GO-bp G-protein coupled receptor signaling pathway JGI N/AIEA
GO:0005834GO-cc heterotrimeric G-protein complex EnsemblGenomesN/AIEA
GO:0005834GO-cc heterotrimeric G-protein complex JGI N/AIEA
GO:0004871GO-mf signal transducer activity EnsemblGenomesN/AIEA
GO:0004871GO-mf signal transducer activity JGI N/AIEA

Proteins Associated with Glyma.17g048600
LocusGene SymbolProtein Name
DEP1 dense and erect panicle 1

Expression Patterns of Glyma.17g048600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g048600 not represented in the dataset
Glyma.17g048600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g048600
ParalogEvidenceComments
Glyma.13g110900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g048600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g05640 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g048600
>Glyma.17g048600.1 sequence-type=CDS polypeptide=Glyma.17g048600.1.p locus=Glyma.17g048600 ID=Glyma.17g048600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCACTACTCCCACCACCGTTCGTTCTTCTTCCGTCCCTTCTCTGCCTCCACCCTCTCCTAAGTCCCCGCCGGAGTACCCAGATTTGTATGGCAAGCGCCGTGAAACCGCCAGGGTTCACATGCTCGAGAGGGAAATCACTTTTCTCGAGGAAGAATTAAAATCTGTTGAGGGCCTTCAACCAGCTTCAAGATGCTGCAAAGAGATTGCTGATTATGTGATGGCAAACGCAGATCCCCTGTTACCTTCAACCAAGAAGAACCGCCGGTCATGTCGCTTCTGGAAGTGGCTCTGTGGCATGCCCTGTTTTAACCTCTCTTGGATCTGCTGTTGTTGCTGCTGTGAAGGGTTATCTTTACAACTAAAATTGCCACGCTGCTGTTGTGACTGCAAACCATGCAGTTGCAGTTGCAGTTGTCTTCCACCCATCAAATGCTGCTCCTTACCAAAGTGGAGCTGTTGTTGCTCTTGCCCCAAATCAAATTGCTGTAAAGAGGGTTGTGGTTTTGGAAATTGTTGTACTTTCCCACGTAGTTGCAATTTTGGGTGTCCAACTTGTCCATCTTGCCCCTCTTGCTGCAGTTGCAAATGCACCTGCACTTGCTCTTGCCCAAGCTGTCCGAAGGTAAGCCCATGTTGCTGTTGTACAAAGTCATGCTGGAGACCATGTTGTTTTTGTTGCTAG
Predicted protein sequences of Glyma.17g048600
>Glyma.17g048600.1.p sequence-type=predicted peptide transcript=Glyma.17g048600.1 locus=Glyma.17g048600 ID=Glyma.17g048600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATTPTTVRSSSVPSLPPPSPKSPPEYPDLYGKRRETARVHMLEREITFLEEELKSVEGLQPASRCCKEIADYVMANADPLLPSTKKNRRSCRFWKWLCGMPCFNLSWICCCCCCEGLSLQLKLPRCCCDCKPCSCSCSCLPPIKCCSLPKWSCCCSCPKSNCCKEGCGFGNCCTFPRSCNFGCPTCPSCPSCCSCKCTCTCSCPSCPKVSPCCCCTKSCWRPCCFCC*






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