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Report for Sequence Feature Glyma.17g045600

Feature Type:gene_model
Chromosome:Gm17
Start:3382529
stop:3389457
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g045600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G43210.1AT ATP binding microtubule motor family protein JGI N/AIEA
GO:0007018GO-bp microtubule-based movement EnsemblGenomesN/AIEA
GO:0007018GO-bp microtubule-based movement JGI N/AIEA
GO:0005871GO-cc kinesin complex EnsemblGenomesN/AIEA
GO:0005874GO-cc microtubule EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0003774GO-mf motor activity EnsemblGenomesN/AIEA
GO:0003777GO-mf microtubule motor activity EnsemblGenomesN/AIEA
GO:0003777GO-mf microtubule motor activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0008017GO-mf microtubule binding EnsemblGenomesN/AIEA
GO:0008017GO-mf microtubule binding JGI N/AIEA
GO:0016887GO-mf ATPase activity EnsemblGenomesN/AIEA
KOG0242 KOG Kinesin-like protein JGI N/AIEA
PTHR24115Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24115:SF323Panther STAR-RELATED LIPID TRANSFER PROTEIN 9 JGI N/AIEA
PF00225PFAM Kinesin motor domain JGI N/AIEA
PF11995PFAM Domain of unknown function (DUF3490) JGI N/AIEA

Expression Patterns of Glyma.17g045600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g045600 not represented in the dataset
Glyma.17g045600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g045600
ParalogEvidenceComments
Glyma.13g114200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g045600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g05042 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g045600
>Glyma.17g045600.1 sequence-type=CDS polypeptide=Glyma.17g045600.1.p locus=Glyma.17g045600 ID=Glyma.17g045600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGACCCATGATAGACGGCCCGTGAAAGTGGAAGATGTGGAAAGTAACGGGCGGAGGAGCACGATGACGGGAACACCGGCAGCGGCAGCAACGCCGCTGTCTAAGATACAGAGGAATTCGTCAAGTACCTTGGGTGGCCAAAAAGTCCGGGAGGAGAAAATCCGAGTCACGGTTCGAATGAGGCCACTCAATAGACATGAACAAGCTATGTATTATAAAGTTTTTGCACCTACGTGCTTAACTCAGAAGGTTTATGAAGAAGGGGCTAAAGATGTTGCTTTATCAGCACTTTCTGGAATCAGTTCAACAATTTTTGCCTATGGGCAGACTAGTAGTGGTAAGACATTCACGATGAGAGGCATCACTGAAAGTGCTATTAAAACACCAGAAAGGGATTTTATTTTGAGAATCTCTGCTTTGGAAATCTATAATGAGACAGTCATAGACCTTCTAAAACGTGAATCTGGTCCTCGTCGGCTCTTGGATGATCCTGAGAAAGGGACTGTTGTGGAAAAGCTGAATGAAGAAGTAGCTAAAGATGATCAACATCTAAGGCGTTTAATTGGCATCTGCGAAGTTCTAGAAAATATAGAAGTTGTGGGCATTGTGCTCTTAGGTCATCAGCATACTACTATTGTTCATGTAAATATTGTATCTGCAGCACAAAGGCAAGTGGGAGAAACTGCTTTAAATAATAAAAGCTCAAGATCACATCAAATAATCAGGCTGACTGTAGAGAGCAGCCTTCGTGTAAGTTCAGGTCACATAAAGTCTTACATAGCCAGTTTGAATTTTGTGGATCTTGCTGGAAGTGAACGCATCTCTCAAACAAATACATGTGGAGCAAGAATGAAGGAATCTGATTCAGCTTTTGGAGTTTTCTTTTGCTTTTGCAGTGGCGGAAAACGTGGTCACATACCATATAGAGACTCGAAATTGACACGAATATTGCAGTCTTCAATAGGGGGGAATGCTCGAACAGCGATTATATGTGCCATAAGTCCTTCCTTAAGTCACCAAACAAGAAATACACTAGCATTTGCTACCAGTGCCAAGGAGGTCTTTAATACTGCCCGAGTGAATATGGTTGTTTCAGATAAGAGACTAGTTAGACAGTTGCAAAAGGAAGCTGCCAGGCTTGAAGGGGAGTTACGAAGCCCTGACCTTTCTGTGAATTCATGTCTAAGGTCATTGCTAGCTGAAAAGGAGTTGAAAATTAGGCAGGGGTCAAACCATTGTGGGCCCTCTAGTCAAGTTGTCAGGTGTCTTTCTTTTCCTGAAGAGAATGAGTCAGCTAATGGTAAACGTACTCCAGAGCGAAGAGAGGCAGTAGGCAGAAGAGAGGCGGTAGGCAGGCAGGCAATGCTGAAGAGTTTATTGGCTTCTCCTGACCCATCCATACTAGTTGGTGAAATTCGAAAGCTTGAGAATCGGCAACTGCAACTCTGTGAGGATGCAAATCGAGCACTTGAATTCTGCACAAGGATTTTGCGACTCACAAACTTGGGTGGGAATCAAGAAACTGCTGAAACCATGTCAAAAGTACTATCTGAAATTAAAGACTTGGTAGCTGCCATCTCTACTCCAGAAGAAATTATGGCAGCAAATAAGGACGATCTAATAGCAAAGATCACACAGTTGAAAAATCAAGGGATCACCATTGCATCTTTAGAAAGGAAGCTGGAGAATGTTCAAAAATCTATTGACAAACTTGTCTCTGCTTTTAGCGCAGAGGAGACTCCAGAAAACAAGACCCCGCTGAGAAGGAAGAGAATTCTTCCTTTCACCTTAAGCAACAGTCCCAACATGCAACATATAATACGTGCTCCTTGCTCGCCTCTCTCCTCTTCGCGTAAAGCAATGGAACATGAAATTGAGAACAGGGCACCAGAAAACAACATTGGCGTCTCTGGCAGTGATTCTTTTGCTAAGTTACATAAAGATACTCCACGAAAGGATGATGAAAGTTGTGATTCTGTTTTATCACGGGAAGCAAGCCCAGCTACACGGCAATCAAAATCAGTGAATGTGAAGAAGATTCCAAAAATGTTCAAGAATGTTTTGGAACTGGAAGCAAACAAGTCGTTAAATGAAGAAAAGGATACACCTGATCGGTCTCCCTTGCCATGGGATATACTATTTGATCAGCAGAGAAAGCAAATTATCATGTTATGGCATTTATGCCACATATCTCTTGTGCACCGGACACAGTTTTTTCTTCTTTTAGGGGGAGACCCTTCTGATCAGATATATATGGAAGTTGAACTTAGAAGATTGACTCGGTTAGAACAGCACCTGGCGGAGGTTGGGAATGCTACACTTCTAGGTGGTGATGAGCCTGCAGGCTCTGTTTCAGCAAGCATCAGAGCTCTGAAGCAAGAAAGGGAACATCTAGCTAGGAAGGTGAACACTAAACTTACAGCAGAGGAGAGGGAACTGCTTTATGCAAAATTGGAAGTTCCTCCGGTTGGAAAACAGAGGAGGCTGCAATTTGTGAATAAATTGTGGACCGACCCTTATAACATGCAACATGTGCAAGAAAGTGCTGAAATTGTAGCAAAGCTCATTGATTTCAGTGTATCTGATGAAAACAGCAAGGACTTGATTGAATTAAACTTTTCAAGTCCTTTTAATAAGAAACAATGGGCGGGTTGGAACTTTATATCAAATCTTCTAAATTTGTAA
Predicted protein sequences of Glyma.17g045600
>Glyma.17g045600.1.p sequence-type=predicted peptide transcript=Glyma.17g045600.1 locus=Glyma.17g045600 ID=Glyma.17g045600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKTHDRRPVKVEDVESNGRRSTMTGTPAAAATPLSKIQRNSSSTLGGQKVREEKIRVTVRMRPLNRHEQAMYYKVFAPTCLTQKVYEEGAKDVALSALSGISSTIFAYGQTSSGKTFTMRGITESAIKTPERDFILRISALEIYNETVIDLLKRESGPRRLLDDPEKGTVVEKLNEEVAKDDQHLRRLIGICEVLENIEVVGIVLLGHQHTTIVHVNIVSAAQRQVGETALNNKSSRSHQIIRLTVESSLRVSSGHIKSYIASLNFVDLAGSERISQTNTCGARMKESDSAFGVFFCFCSGGKRGHIPYRDSKLTRILQSSIGGNARTAIICAISPSLSHQTRNTLAFATSAKEVFNTARVNMVVSDKRLVRQLQKEAARLEGELRSPDLSVNSCLRSLLAEKELKIRQGSNHCGPSSQVVRCLSFPEENESANGKRTPERREAVGRREAVGRQAMLKSLLASPDPSILVGEIRKLENRQLQLCEDANRALEFCTRILRLTNLGGNQETAETMSKVLSEIKDLVAAISTPEEIMAANKDDLIAKITQLKNQGITIASLERKLENVQKSIDKLVSAFSAEETPENKTPLRRKRILPFTLSNSPNMQHIIRAPCSPLSSSRKAMEHEIENRAPENNIGVSGSDSFAKLHKDTPRKDDESCDSVLSREASPATRQSKSVNVKKIPKMFKNVLELEANKSLNEEKDTPDRSPLPWDILFDQQRKQIIMLWHLCHISLVHRTQFFLLLGGDPSDQIYMEVELRRLTRLEQHLAEVGNATLLGGDEPAGSVSASIRALKQEREHLARKVNTKLTAEERELLYAKLEVPPVGKQRRLQFVNKLWTDPYNMQHVQESAEIVAKLIDFSVSDENSKDLIELNFSSPFNKKQWAGWNFISNLLNL*






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