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Report for Sequence Feature Glyma.17g045500

Feature Type:gene_model
Chromosome:Gm17
Start:3379098
stop:3381718
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g045500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G33250.1AT eukaryotic translation initiation factor 3K JGI N/AIEA
GO:0001731GO-bp formation of translation preinitiation complex EnsemblGenomesN/AIEA
GO:0001732GO-bp formation of cytoplasmic translation initiation complex EnsemblGenomesN/AIEA
GO:0002183GO-bp cytoplasmic translational initiation EnsemblGenomesN/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006413GO-bp translational initiation EnsemblGenomesN/AIEA
GO:0006446GO-bp regulation of translational initiation EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005852GO-cc eukaryotic translation initiation factor 3 complex EnsemblGenomesN/AIEA
GO:0016282GO-cc eukaryotic 43S preinitiation complex EnsemblGenomesN/AIEA
GO:0033290GO-cc eukaryotic 48S preinitiation complex EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003743GO-mf translation initiation factor activity EnsemblGenomesN/AIEA
GO:0005488GO-mf binding EnsemblGenomesN/AIEA
GO:0043022GO-mf ribosome binding EnsemblGenomesN/AIEA
KOG3252 KOG Uncharacterized conserved protein JGI N/AIEA
PTHR13022Panther EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11 JGI N/AIEA
PF03399PFAM SAC3/GANP/Nin1/mts3/eIF-3 p25 family JGI N/AIEA
PF10075PFAM COP9 signalosome, subunit CSN8 JGI N/AIEA

Expression Patterns of Glyma.17g045500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g045500 not represented in the dataset
Glyma.17g045500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g045500
ParalogEvidenceComments
Glyma.13g114300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g045500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g05030 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.17g045500
>Glyma.17g045500.2 sequence-type=transcript locus=Glyma.17g045500 ID=Glyma.17g045500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CACTCACTCAGCCTAATTAATAAAAGGGGAAGTTTTTGCATAGTGTTGAGTTTTGTCGCAGCATTCCATACGAGGCCGAAGGGAAGAGTTTTTGTTGGGTTTGGGAGGCTAAGTAGGGTTTGCGTTGAGAAAGAGAGAGATGGGAAGAGAAAAGGAGACAACAAAGGTAGCTTACACAGTGGAGCAGCTTGTAGCCTTCAATCCATACAATCCCGATATTCTTCCAGATCTCGAAAACTATGTCAACGACCAGGTTCCTTCTCTATCTTCTTTTTCCTAAATCCAAAAACCTAGGTTTGAAATGAAACCCAATTTCTGTTTCCTTTTAGGTTTCGTCGCAAACTTACAGCCTGGACGCGAATCTCTGCCTTCTTCGCCTCTACCAGTTTGAACCAGAGAAAATGAGTTCCCAGATTGTGGCCCGCATATTGGTCAAGGCTCTCATGGCAATGCCGGCGCCAGATTTCAGCCTTTGTCTCTTTTTGATTCCAGAACGCGTGCAAATGGAGGAGCAGTTCAAGACTTTGATTGTCCTGTCTCACTATTTGGAGACAGGAAGATTTCGGCAGTTCTGGGATGAAGCAGCAAAAAGTCGTCATATAGTTGAAGCTGTGCCAGGATTTGAGCAGGCAATCCAAGGATATGCAATCCATGTCCTTTCCTTGACTTACCAAAGGATTCCTAGAACTGTGCTTGCTGAGGCTATTAACATAGAAGGTTTATCCTTGGACAAATTCATTGAACATCAAGTAGCCAACAGTGGTTGGGTTGTTGAGAAAAGCCAAGGCAGGGGTCAACTCGTTGTCCTCCCTAGAACTGAATTTAATGACCCAGCTTTGAAGAAAAATGCTGCAGACAGTGTACCATTGGAGCACATTACTCGCATCTTCCCTATTCTTAGTTGATTTTTCTATGGTAGACTGCCAATTTTCTATCCTGAAGGAGATTATGCGGATATTATATCAGTTGGAGCAACACCTTCCCTTCCCCTTGGATGCTTCAATTTGAGAATTAGTGGACAGCTATTGTAGTTTACTCATGTTTTGCATACCTGTCTGAAAATTAATTTGCTTTGCTATGCTTTATTATTCGTTGAACAGATGGCCTGTTCTCTATACTGCGTCTATAAGTTCCCTGGCTAGTTATGAGTAGTAGGATAAAAATATGAGGAAAGAAGAAATACAGATTGGAATAAGGAGTAGAGCAAGGTTCACTTATATGCTCGGTATGGTACTGGGGCAAAATTGAACTCGATGCAGTCCA

>Glyma.17g045500.3 sequence-type=transcript locus=Glyma.17g045500 ID=Glyma.17g045500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CACTCACTCAGCCTAATTAATAAAAGGGGAAGTTTTTGCATAGTGTTGAGTTTTGTCGCAGCATTCCATACGAGGCCGAAGGGAAGAGTTTTTGTTGGGTTTGGGAGGCTAAGTAGGGTTTGCGTTGAGAAAGAGAGAGATGGGAAGAGAAAAGGAGACAACAAAGGTAGCTTACACAGTGGAGCAGCTTGTAGCCTTCAATCCATACAATCCCGATATTCTTCCAGATCTCGAAAACTATGTTTCGTCGCAAACTTACAGCCTGGACGCGAATCTCTGCCTTCTTCGCCTCTACCAGTTTGAACCAGAGAAAATGAGTTCCCAGATTGTGGCCCGCATATTGGTCAAGGCTCTCATGGCAATGCCGGCGCCAGATTTCAGCCTTTGTCTCTTTTTGATTCCAGAACGCGTGCAAATGGAGGAGCAGTTCAAGACTTTGATTGTCCTGTCTCACTATTTGGAGACAGGAAGATTTCGGCAGTTCTGGGATGAAGCAGCAAAAAGTCGTCATATAGTTGAAGCTGTGCCAGGATTTGAGCAGGCAATCCAAGGATATGCAATCCATGTCCTTTCCTTGACTTACCAAAGGATTCCTAGAACTGTGCTTGCTGAGGCTATTAACATAGAAGGTTTATCCTTGGACAAATTCATTGAACATCAAGTAGCCAACAGTGGTTGGGTTGTTGAGAAAAGCCAAGGCAGGGGTCAACTCGTTGTCCTCCCTAGAACTGAATTTAATGACCCAGCTTTGAAGAAAAATGCTGCAGACAGTGTACCATTGGAGCACATTACTCGCATCTTCCCTATTCTTAGTTGATTTTTCTATGGTAGACTGCCAATTTTCTATCCTGAAGGAGATTATGCGGATATTATATCAGTTGGAGCAACACCTTCCCTTCCCCTTGGATGCTTCAATTTGAGAATTAGTGGACAGCTATTGTAGTTTACTCATGTTTTGCATACCTGTCTGAAAATTAATTTGCTTTGCTATGCTTTATTATTCGTTGAACAGATGGCCTGTTCTCTATACTGCGTCTATAAGTTCCCTGGCTAGTTATGAGTAGTAGGATAAAAATATGAGGAAAGAAGAAATACAGATTGGAATAAGGAGTAGAGCAAGGTTCACTTATATGCTCGGTATGGTACTGGGGCAAAATTGAACTCGATGCAGTCCA
Coding sequences of Glyma.17g045500
>Glyma.17g045500.1 sequence-type=CDS polypeptide=Glyma.17g045500.1.p locus=Glyma.17g045500 ID=Glyma.17g045500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAAGAGAAAAGGAGACAACAAAGGTAGCTTACACAGTGGAGCAGCTTGTAGCCTTCAATCCATACAATCCCGATATTCTTCCAGATCTCGAAAACTATGTCAACGACCAGGTTTCGTCGCAAACTTACAGCCTGGACGCGAATCTCTGCCTTCTTCGCCTCTACCAGTTTGAACCAGAGAAAATGAGTTCCCAGATTGTGGCCCGCATATTGGTCAAGGCTCTCATGGCAATGCCGGCGCCAGATTTCAGCCTTTGTCTCTTTTTGATTCCAGAACGCGTGCAAATGGAGGAGCAGTTCAAGACTTTGATTGTCCTGTCTCACTATTTGGAGACAGGAAGATTTCGGCAGTTCTGGGATGAAGCAGCAAAAAGTCGTCATATAGTTGAAGCTGTGCCAGGATTTGAGCAGGCAATCCAAGGATATGCAATCCATGTCCTTTCCTTGACTTACCAAAGGATTCCTAGAACTGTGCTTGCTGAGGCTATTAACATAGAAGGTTTATCCTTGGACAAATTCATTGAACATCAAGTAGCCAACAGTGGTTGGGTTGTTGAGAAAAGCCAAGGCAGGGGTCAACTCGTTGTCCTCCCTAGAACTGAATTTAATGACCCAGCTTTGAAGAAAAATGCTGCAGACAGTGTACCATTGGAGCACATTACTCGCATCTTCCCTATTCTTAGTTGA

>Glyma.17g045500.2 sequence-type=CDS polypeptide=Glyma.17g045500.2.p locus=Glyma.17g045500 ID=Glyma.17g045500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTTCCCAGATTGTGGCCCGCATATTGGTCAAGGCTCTCATGGCAATGCCGGCGCCAGATTTCAGCCTTTGTCTCTTTTTGATTCCAGAACGCGTGCAAATGGAGGAGCAGTTCAAGACTTTGATTGTCCTGTCTCACTATTTGGAGACAGGAAGATTTCGGCAGTTCTGGGATGAAGCAGCAAAAAGTCGTCATATAGTTGAAGCTGTGCCAGGATTTGAGCAGGCAATCCAAGGATATGCAATCCATGTCCTTTCCTTGACTTACCAAAGGATTCCTAGAACTGTGCTTGCTGAGGCTATTAACATAGAAGGTTTATCCTTGGACAAATTCATTGAACATCAAGTAGCCAACAGTGGTTGGGTTGTTGAGAAAAGCCAAGGCAGGGGTCAACTCGTTGTCCTCCCTAGAACTGAATTTAATGACCCAGCTTTGAAGAAAAATGCTGCAGACAGTGTACCATTGGAGCACATTACTCGCATCTTCCCTATTCTTAGTTGA

>Glyma.17g045500.3 sequence-type=CDS polypeptide=Glyma.17g045500.3.p locus=Glyma.17g045500 ID=Glyma.17g045500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAAGAGAAAAGGAGACAACAAAGGTAGCTTACACAGTGGAGCAGCTTGTAGCCTTCAATCCATACAATCCCGATATTCTTCCAGATCTCGAAAACTATGTTTCGTCGCAAACTTACAGCCTGGACGCGAATCTCTGCCTTCTTCGCCTCTACCAGTTTGAACCAGAGAAAATGAGTTCCCAGATTGTGGCCCGCATATTGGTCAAGGCTCTCATGGCAATGCCGGCGCCAGATTTCAGCCTTTGTCTCTTTTTGATTCCAGAACGCGTGCAAATGGAGGAGCAGTTCAAGACTTTGATTGTCCTGTCTCACTATTTGGAGACAGGAAGATTTCGGCAGTTCTGGGATGAAGCAGCAAAAAGTCGTCATATAGTTGAAGCTGTGCCAGGATTTGAGCAGGCAATCCAAGGATATGCAATCCATGTCCTTTCCTTGACTTACCAAAGGATTCCTAGAACTGTGCTTGCTGAGGCTATTAACATAGAAGGTTTATCCTTGGACAAATTCATTGAACATCAAGTAGCCAACAGTGGTTGGGTTGTTGAGAAAAGCCAAGGCAGGGGTCAACTCGTTGTCCTCCCTAGAACTGAATTTAATGACCCAGCTTTGAAGAAAAATGCTGCAGACAGTGTACCATTGGAGCACATTACTCGCATCTTCCCTATTCTTAGTTGA
Predicted protein sequences of Glyma.17g045500
>Glyma.17g045500.1.p sequence-type=predicted peptide transcript=Glyma.17g045500.1 locus=Glyma.17g045500 ID=Glyma.17g045500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGREKETTKVAYTVEQLVAFNPYNPDILPDLENYVNDQVSSQTYSLDANLCLLRLYQFEPEKMSSQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETGRFRQFWDEAAKSRHIVEAVPGFEQAIQGYAIHVLSLTYQRIPRTVLAEAINIEGLSLDKFIEHQVANSGWVVEKSQGRGQLVVLPRTEFNDPALKKNAADSVPLEHITRIFPILS*

>Glyma.17g045500.2.p sequence-type=predicted peptide transcript=Glyma.17g045500.2 locus=Glyma.17g045500 ID=Glyma.17g045500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETGRFRQFWDEAAKSRHIVEAVPGFEQAIQGYAIHVLSLTYQRIPRTVLAEAINIEGLSLDKFIEHQVANSGWVVEKSQGRGQLVVLPRTEFNDPALKKNAADSVPLEHITRIFPILS*

>Glyma.17g045500.3.p sequence-type=predicted peptide transcript=Glyma.17g045500.3 locus=Glyma.17g045500 ID=Glyma.17g045500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGREKETTKVAYTVEQLVAFNPYNPDILPDLENYVSSQTYSLDANLCLLRLYQFEPEKMSSQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETGRFRQFWDEAAKSRHIVEAVPGFEQAIQGYAIHVLSLTYQRIPRTVLAEAINIEGLSLDKFIEHQVANSGWVVEKSQGRGQLVVLPRTEFNDPALKKNAADSVPLEHITRIFPILS*






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