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Report for Sequence Feature Glyma.17g044300

Feature Type:gene_model
Chromosome:Gm17
Start:3285534
stop:3295066
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g044300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G33150.1AT lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme JGI N/AIEA
GO:0006091GO-bp generation of precursor metabolites and energy EnsemblGenomesN/AIEA
GO:0019878GO-bp lysine biosynthetic process via aminoadipic acid EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0004753GO-mf saccharopine dehydrogenase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
KOG0172 KOG Lysine-ketoglutarate reductase/saccharopine dehydrogenase JGI N/AIEA
PTHR11133Panther SACCHAROPINE DEHYDROGENASE JGI N/AIEA
PTHR11133:SF3Panther JGI N/AIEA
PF01262PFAM Alanine dehydrogenase/PNT, C-terminal domain JGI N/AIEA
PF03435PFAM Saccharopine dehydrogenase JGI N/AIEA
PF04455PFAM LOR/SDH bifunctional enzyme conserved region JGI N/AIEA
PF05222PFAM Alanine dehydrogenase/PNT, N-terminal domain JGI N/AIEA
LYSINE-DEG2-PWYSoyCyc9 lysine degradation II Plant Metabolic Network ISS
PWYQT-1SoyCyc9 lysine degradation III Plant Metabolic Network ISS
GN7V-59155SoyCyc9-rxn saccharopine dehydrogenase (NADP+, L-lysine-forming) Plant Metabolic Network ISS

Expression Patterns of Glyma.17g044300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g044300
ParalogEvidenceComments
Glyma.13g115500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g044300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g04920 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g044300
>Glyma.17g044300.1 sequence-type=CDS polypeptide=Glyma.17g044300.1.p locus=Glyma.17g044300 ID=Glyma.17g044300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTTGGGAACGGGGTTGTTGGGATCTTGGCAGAATCTGTGAATAAATGGGAAAGAAGGGCACCTTTGACCCCATCACATTGTGCTCGATTACTCCATGGTGGGACAGGTGTTTCTAGGATCATTGTGCAGCCTTCCACTAAGAGAATTCACCATGATGCTCTCTATGAAGAAGTTGGTGCTGAAATATCACAAGACTTGTCACAATGTGGTCTCATCCTTGGCATTAAGCAACCAAAGCTGGAGATGATATTACCAGATAGAGCTTATGCTTTCTTCTCACATACACATAAAGCACAGAAAGAAAACATGCCTTTGCTGGATAAGATTCTAGCTGAGAGGGCATCGTTATATGACTATGAATTAATTGTTGGGGACACTGGGAAAAGGTTACTTGCATTTGGAAAATTCGCTGGTAGAGCTGGAATGATCGACTTTTTGCGCGGATTAGGACAGCGGTTTTTAAGTCTTGGATATTCAACACCTTTCTTGTCACTTGGATCATCTTACATGTACCCTTCCCTGGCTGCTGCTAAGGCTGCTGTGATTTCTGTTGGTGAAGAAATTGCGACGCAGGGATTGCCATTGGGGATTTGTCCCCTGGTTTGTTTATTTACTGGTTCAGGAAATGTTTGTTCTGGTGCACAGGAGATATTTAAGCTTCTTCCTCATACCTTTGTTGATCCATCTAAACTACGCGACCTACATAGAACGGACCCAGATCAACCAAGGCATGCTTCAAAAAGAGTTTTCCAAGTTTATGGTTGTGTTGTGACTGCCCAAGACATGGTTGAACCCAAAGATCCCGTGAAAGTGTTTGACAAAGCAGACTACTATGCACATCCTGAGCATTACAATCCCACTTTCCATGAAAAAATAGCACCATATGCATCTGTTATTGTCAATTGCATGTATTGGGAGAAAAGATTTCCTCAATTGCTGAGCTATAAGCAGATGCAAGACTTAATGGGCCGGGGGAGCCCCCTTGTTGGAATAGCTGACATAACGTGTGATATAGGGGGTTCAATTGAGTTTGTTAACCGCAGTACTTCAATTGATTCACCCTTCTTCAGATATGATCCCTTAACAAATTCCTACCATGATGATATGGAGGGGAATGGAGTGATATGCTTAGCTGTTGACATTCTTCCAACAGAATTTGCAAAGGAGGCTTCCCAACATTTTGGAAACATACTTTCCCAATTTGTCGTAAATTTGGCTTCTGCTACAGACATTACAAAGTTGCCTGCTCACTTAAGGAGAGCTTGCATAGCCCATAAAGGAGTGCTAACCTCCTTATATGATTATATCCCACGCATGCGGAGTTCTGATTCAGAGGAAGTATCAGAAAACTCAGAAAATTCTCTATCTAACAAAAGGAAGTATAATATATCGGTGTCTCTGAGTGGTCACTTATTTGATCAGTTTCTGATAAATGAGGCCTTAGATATTATTGAAGCTGCAGGAGGCTCCTTCCACTTAGTCAACTGCCATGTGGGTCAGAGCATTGAAGCCGTATCATTCTCTGAACTTGAAGTTGGTGCAGATAACAGGGCTGTTCTGGATCAAATCATTGATTCTTTAACTGCTATTGCTAATCCAACTGAACATGATAGATTTTCAAATCAAGATTCAAGTAAAATTTCACTTAAGCTTGGTAAAGTTGAAGAGAATGGCATAGAGAAGGAATCTGACCCCAGAAAGAAGGCTGCGGTTTTAATTCTTGGAGCTGGTCGGGTCTGTCAACCAGCTGCTGAAATGTTATCATCATTTGGAAGGCCATCATCGAGCCAATGGTATAAAACATTGTTGGAAGATGATTTTGAATGTCAAACTGATGTAGAAGTCATTGTGGGATCTCTGTACCTGAAGGATGCAGAGCAGACTGTTGAGGGCATTCCAAATGTAACCGGAATTCAGCTTGATGTGATGGATCGTGCCAATTTGTGTAAGTACATTTCACAGGTTGACGTTGTTATAAGTTTGCTGCCCCCAAGTTGTCATATTATTGTAGCAAATGCTTGCATTGAGCTGAAAAAACATCTTGTCACTGCTAGCTATGTTGATAGCTCCATGTCAATGCTAAATGATAAGGCTAAAGATGCTGGCATAACAATTCTTGGAGAGATGGGCTTAGACCCAGGAATTGATCATATGATGGCAATGAAGATGATCAACCAAGCACATGTGAGGAAGGGGAAAATAAAGTCTTTCACTTCTTATTGTGGTGGACTTCCATCTCCTGAAGCTGCTAACAATCCATTAGCATATAAATTCAGTTGGAATCCTGCAGGAGCCATCCGAGCTGGGCGCAATCCTGCCACCTACAAATGGGGTGGTGAAACTGTACATATTGATGGGGACGATCTTTATGATTCGGCTACAAGACTAAGGCTACCGGACCTTCCTGCTTTTGCTTTGGAATGTCTCCCAAATCGCAATTCATTACTTTATGGGGATTTGTATGGAATAACTGAAGCATCAACCATTTTCCGTGGAACCCTCCGCTATGAAGGATTTAGTGAGATCATGGGGACACTGTCTAGGATTAGCTTATTTAACAATGAAGCCCATTCGTTGCTAATGAATGGACAAAGACCAACTTTCAGAAAATTCTTATTTGAACTTCTCAAAGTTGTTGGTGATAATCCAGATGAACTATTGATAGGAGAGAATGACATCATGGAGCAAATATTAATACAAGGGCACTGCAAAGATCAAAGAACGGCAATGGAGACAGCAAAAACAATCATTTTCTTGGGACTTCTTGACCAAACTGAAATCCCTGCTTCCTGCAAAAGTGCTTTTGATGTTGCTTGTTTCCGCATGGAGGAGAGGTTATCATACACCAGCACAGAAAAGGATATGGTGCTTTTGCATCATGAAGTGGAAATAGAATACCCAGATAGCCAAATTACAGAGAAGCATAGAGCTACTTTACTTGAATTTGGGAAGACTCTTGATGAAAAAACCACAACTGCCATGGCCCTTACTGTTGGTATTCCAGCTGCTGTTGGAGCTTTGCTTTTATTGACAAACAAAATTCAGACAAGAGGAGTCTTAAGGCCTATCGAACCTGAAGTATACAATCCAGCACTGGATATTATAGAAGCTTATGGGATCAAGTTGATAGAGAAGACCGAGTAA
Predicted protein sequences of Glyma.17g044300
>Glyma.17g044300.1.p sequence-type=predicted peptide transcript=Glyma.17g044300.1 locus=Glyma.17g044300 ID=Glyma.17g044300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLGNGVVGILAESVNKWERRAPLTPSHCARLLHGGTGVSRIIVQPSTKRIHHDALYEEVGAEISQDLSQCGLILGIKQPKLEMILPDRAYAFFSHTHKAQKENMPLLDKILAERASLYDYELIVGDTGKRLLAFGKFAGRAGMIDFLRGLGQRFLSLGYSTPFLSLGSSYMYPSLAAAKAAVISVGEEIATQGLPLGICPLVCLFTGSGNVCSGAQEIFKLLPHTFVDPSKLRDLHRTDPDQPRHASKRVFQVYGCVVTAQDMVEPKDPVKVFDKADYYAHPEHYNPTFHEKIAPYASVIVNCMYWEKRFPQLLSYKQMQDLMGRGSPLVGIADITCDIGGSIEFVNRSTSIDSPFFRYDPLTNSYHDDMEGNGVICLAVDILPTEFAKEASQHFGNILSQFVVNLASATDITKLPAHLRRACIAHKGVLTSLYDYIPRMRSSDSEEVSENSENSLSNKRKYNISVSLSGHLFDQFLINEALDIIEAAGGSFHLVNCHVGQSIEAVSFSELEVGADNRAVLDQIIDSLTAIANPTEHDRFSNQDSSKISLKLGKVEENGIEKESDPRKKAAVLILGAGRVCQPAAEMLSSFGRPSSSQWYKTLLEDDFECQTDVEVIVGSLYLKDAEQTVEGIPNVTGIQLDVMDRANLCKYISQVDVVISLLPPSCHIIVANACIELKKHLVTASYVDSSMSMLNDKAKDAGITILGEMGLDPGIDHMMAMKMINQAHVRKGKIKSFTSYCGGLPSPEAANNPLAYKFSWNPAGAIRAGRNPATYKWGGETVHIDGDDLYDSATRLRLPDLPAFALECLPNRNSLLYGDLYGITEASTIFRGTLRYEGFSEIMGTLSRISLFNNEAHSLLMNGQRPTFRKFLFELLKVVGDNPDELLIGENDIMEQILIQGHCKDQRTAMETAKTIIFLGLLDQTEIPASCKSAFDVACFRMEERLSYTSTEKDMVLLHHEVEIEYPDSQITEKHRATLLEFGKTLDEKTTTAMALTVGIPAAVGALLLLTNKIQTRGVLRPIEPEVYNPALDIIEAYGIKLIEKTE*






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