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Report for Sequence Feature Glyma.17g042700

Feature Type:gene_model
Chromosome:Gm17
Start:3175336
stop:3177066
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g042700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G17590.1AT transcription regulatory protein SNF5, putative (BSH) JGI N/AIEA
GO:0006281GO-bp DNA repair EnsemblGenomesN/AIEA
GO:0006337GO-bp nucleosome disassembly EnsemblGenomesN/AIEA
GO:0006338GO-bp chromatin remodeling EnsemblGenomesN/AIEA
GO:0006338GO-bp chromatin remodeling JGI N/AIEA
GO:0006357GO-bp regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0043044GO-bp ATP-dependent chromatin remodeling EnsemblGenomesN/AIEA
GO:0000228GO-cc nuclear chromosome EnsemblGenomesN/AIEA
GO:0000228GO-cc nuclear chromosome JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
PTHR10019Panther SNF5 JGI N/AIEA
PF04855PFAM SNF5 / SMARCB1 / INI1 JGI N/AIEA

Expression Patterns of Glyma.17g042700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g042700 not represented in the dataset
Glyma.17g042700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g042700
ParalogEvidenceComments
Glyma.13g117200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g042700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g04750 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g042700
>Glyma.17g042700.1 sequence-type=CDS polypeptide=Glyma.17g042700.1.p locus=Glyma.17g042700 ID=Glyma.17g042700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAACCACGATTTCGTGTTTCTACAGAAACCCCGTCAAGTTCAGAATGCCAACTGCGGAGAACTTGGTTCCCATTCGATTGGACATCGAAATCGAGGGGCAGAGATACAAGGACGCGCTCACTTGGAACCCTTCTGATCCCGATTCTGAGGTTGTCGTCTTTGCAAAAAGGACTGCTAAAGACTTGAAGCTCCCTCCCGTTTTTGTAACACAAATTGCTCAATCAATTCAACTTGATCTTCGTGTTAATCATACGCTCGTGAAGGACCAGTTTTTATGGGACTCGAACAACTTTGAGAGTGATCCTAAAGAGTTTGCCAGACTCTTCTGCAAGGACACGGGCATTGAAGATCCCGAGGTTGGACCAGCTATTGCCTTTGCTATCAGAGAGCAGCTTAATGAGATTGCAATTCAAAGTGTGGTTTCAGCAAGAGAAAGCAGAATGAGCAAGAAGGGTCGTTGA
Predicted protein sequences of Glyma.17g042700
>Glyma.17g042700.1.p sequence-type=predicted peptide transcript=Glyma.17g042700.1 locus=Glyma.17g042700 ID=Glyma.17g042700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKTTISCFYRNPVKFRMPTAENLVPIRLDIEIEGQRYKDALTWNPSDPDSEVVVFAKRTAKDLKLPPVFVTQIAQSIQLDLRVNHTLVKDQFLWDSNNFESDPKEFARLFCKDTGIEDPEVGPAIAFAIREQLNEIAIQSVVSARESRMSKKGR*






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