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Report for Sequence Feature Glyma.17g040500

Feature Type:gene_model
Chromosome:Gm17
Start:2990067
stop:2993227
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g040500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G06483.1AT pyruvate dehydrogenase kinase JGI N/AIEA
GO:0006468GO-bp protein phosphorylation EnsemblGenomesN/AIEA
GO:0016310GO-bp phosphorylation EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0016301GO-mf kinase activity EnsemblGenomesN/AIEA
GO:0016772GO-mf transferase activity, transferring phosphorus-containing groups EnsemblGenomesN/AIEA
KOG0787 KOG Dehydrogenase kinase JGI N/AIEA
PTHR11947Panther PYRUVATE DEHYDROGENASE KINASE JGI N/AIEA
PTHR11947:SF3Panther [PYRUVATE DEHYDROGENASE [LIPOAMIDE]] KINASE, MITOCHONDRIAL JGI N/AIEA
PF02518PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JGI N/AIEA
PF10436PFAM Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase JGI N/AIEA

Proteins Associated with Glyma.17g040500
LocusGene SymbolProtein Name
PDK3 mitochondrial pyruvate dehydrogenase E1alpha-kinase 3

Expression Patterns of Glyma.17g040500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g040500 not represented in the dataset
Glyma.17g040500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g040500
ParalogEvidenceComments
Glyma.13g119800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g040500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g04470 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.17g040500
>Glyma.17g040500.2 sequence-type=transcript locus=Glyma.17g040500 ID=Glyma.17g040500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGCAAAACGCCAGACAAAAACTGAAACTTAGTCATCAAATCAAAGCCTTGTTTTTCTCAAACCCATCTTTCTTTCCCCACCCCACTTGTCCACTTCTGTCCCTATCTCTCTCCACACTTCTTGGGACACTGTCGTTGTCGTTTTCATCTATGTCACTTCCTAGCTCCCGGTTTCATTTATTATATGTTGTTGATTTGTGTGTTGCTGAATTCAGAAACAAGGCATGGAGGTTAACATTGAGAAAACGTTGCTAATGTGTAAGAGTTTCATGAAAGAGGTAAAGATATGGGGTTGTTTGAAGCAGACAGGGGTCAGCCTGAGATACATGATGGAGTTTGGTTCCAACCCCACTCAGAAGAATTTGCTCATTTCTGCACAGTTCCTTCACAAAGAGCTTCCCATTAGAATTGCAAGGAGAGCCATTGAGCTTCACTCTCTCCCTCATGGCTTGTCTCACATGCCTCCTGTCTTGAAGGTTAGACATTGGTACTTGGATTCTTTCCGTGAAATTATATCTTTCCCTGAGATCAAGAATATGAATGACGAGAAAGAATTCACCGAACTGATTAAGGCCATCAAGGTGAGACACAACAATGTGGTACCTACAATGGCCTTGGGTGTTCAGCAATTGAAGAATGTTTTTGAGGATCCTGATGAGATTGATGAGTTTCTTGATCGCTTTTACATGTCAAGAATTGGAATTCGTATGCTCATCGGGCAGCATGTTGAGTTGCACAATCCGAATCCTCCTCCCAATTGTGTAGGTTATATACATACAAATATGTCTCCTGTGAATGTGGCAAGGAATGCTAGTGAGGATGCACGTTCTATGTGTTATCGCGAATATGGCAGTGCCGCAGAAGTTCGCATTTACGGGGATCCTGATTTTACTTTTCCGTATGTTCCAGCTCACTTGCATCTTATGGTATTTGAGTTGGTTAAGAACTCGCTGCGTGCTGTCCAAGAGCGTTTTATGGACTCTGACGAAGTTGCTCCTCCCATTAGAATAATAATAGCAGATGGAATAGAGGATGTTACCATAAAGGTAAGTTTCTATAACTTTTAAGCAGAACCTTTTTTGGGGATATCTCCACCCTGTTCTCAGTGTTATTT
Coding sequences of Glyma.17g040500
>Glyma.17g040500.1 sequence-type=CDS polypeptide=Glyma.17g040500.1.p locus=Glyma.17g040500 ID=Glyma.17g040500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGTTAACATTGAGAAAACGTTGCTAATGTGTAAGAGTTTCATGAAAGAGGTAAAGATATGGGGTTGTTTGAAGCAGACAGGGGTCAGCCTGAGATACATGATGGAGTTTGGTTCCAACCCCACTCAGAAGAATTTGCTCATTTCTGCACAGTTCCTTCACAAAGAGCTTCCCATTAGAATTGCAAGGAGAGCCATTGAGCTTCACTCTCTCCCTCATGGCTTGTCTCACATGCCTCCTGTCTTGAAGGTTAGACATTGGTACTTGGATTCTTTCCGTGAAATTATATCTTTCCCTGAGATCAAGAATATGAATGACGAGAAAGAATTCACCGAACTGATTAAGGCCATCAAGGTGAGACACAACAATGTGGTACCTACAATGGCCTTGGGTGTTCAGCAATTGAAGAATGTTTTTGAGGATCCTGATGAGATTGATGAGTTTCTTGATCGCTTTTACATGTCAAGAATTGGAATTCGTATGCTCATCGGGCAGCATGTTGAGTTGCACAATCCGAATCCTCCTCCCAATTGTGTAGGTTATATACATACAAATATGTCTCCTGTGAATGTGGCAAGGAATGCTAGTGAGGATGCACGTTCTATGTGTTATCGCGAATATGGCAGTGCCGCAGAAGTTCGCATTTACGGGGATCCTGATTTTACTTTTCCGTATGTTCCAGCTCACTTGCATCTTATGGTATTTGAGTTGGTTAAGAACTCGCTGCGTGCTGTCCAAGAGCGTTTTATGGACTCTGACGAAGTTGCTCCTCCCATTAGAATAATAATAGCAGATGGAATAGAGGATGTTACCATAAAGGTCTCAGATGAGGGAGGTGGAATACCAAGGAGTGGTCTTCCAAGAATTTTTACATATCTCTACAGTACAGCCAAAAACTCATCGTCAGTTGAACATGAACCTTCTGATATTGGAACAATGGAAAATGTAACTATGGCTGGATATGGTTATGGACTTCCTATTTGCCGCTTGTATGCTAGGTATTTTGGTGGTGATCTTCAAGTAATCTCTATGGAAGGATATGGGACTGACGCATATCTCCATTTGTCTCGTTTGGGGGATTCGCAAGAACCTTTGCCCTGA

>Glyma.17g040500.2 sequence-type=CDS polypeptide=Glyma.17g040500.2.p locus=Glyma.17g040500 ID=Glyma.17g040500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGTTAACATTGAGAAAACGTTGCTAATGTGTAAGAGTTTCATGAAAGAGGTAAAGATATGGGGTTGTTTGAAGCAGACAGGGGTCAGCCTGAGATACATGATGGAGTTTGGTTCCAACCCCACTCAGAAGAATTTGCTCATTTCTGCACAGTTCCTTCACAAAGAGCTTCCCATTAGAATTGCAAGGAGAGCCATTGAGCTTCACTCTCTCCCTCATGGCTTGTCTCACATGCCTCCTGTCTTGAAGGTTAGACATTGGTACTTGGATTCTTTCCGTGAAATTATATCTTTCCCTGAGATCAAGAATATGAATGACGAGAAAGAATTCACCGAACTGATTAAGGCCATCAAGGTGAGACACAACAATGTGGTACCTACAATGGCCTTGGGTGTTCAGCAATTGAAGAATGTTTTTGAGGATCCTGATGAGATTGATGAGTTTCTTGATCGCTTTTACATGTCAAGAATTGGAATTCGTATGCTCATCGGGCAGCATGTTGAGTTGCACAATCCGAATCCTCCTCCCAATTGTGTAGGTTATATACATACAAATATGTCTCCTGTGAATGTGGCAAGGAATGCTAGTGAGGATGCACGTTCTATGTGTTATCGCGAATATGGCAGTGCCGCAGAAGTTCGCATTTACGGGGATCCTGATTTTACTTTTCCGTATGTTCCAGCTCACTTGCATCTTATGGTATTTGAGTTGGTTAAGAACTCGCTGCGTGCTGTCCAAGAGCGTTTTATGGACTCTGACGAAGTTGCTCCTCCCATTAGAATAATAATAGCAGATGGAATAGAGGATGTTACCATAAAGGTAAGTTTCTATAACTTTTAA
Predicted protein sequences of Glyma.17g040500
>Glyma.17g040500.1.p sequence-type=predicted peptide transcript=Glyma.17g040500.1 locus=Glyma.17g040500 ID=Glyma.17g040500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEVNIEKTLLMCKSFMKEVKIWGCLKQTGVSLRYMMEFGSNPTQKNLLISAQFLHKELPIRIARRAIELHSLPHGLSHMPPVLKVRHWYLDSFREIISFPEIKNMNDEKEFTELIKAIKVRHNNVVPTMALGVQQLKNVFEDPDEIDEFLDRFYMSRIGIRMLIGQHVELHNPNPPPNCVGYIHTNMSPVNVARNASEDARSMCYREYGSAAEVRIYGDPDFTFPYVPAHLHLMVFELVKNSLRAVQERFMDSDEVAPPIRIIIADGIEDVTIKVSDEGGGIPRSGLPRIFTYLYSTAKNSSSVEHEPSDIGTMENVTMAGYGYGLPICRLYARYFGGDLQVISMEGYGTDAYLHLSRLGDSQEPLP*

>Glyma.17g040500.2.p sequence-type=predicted peptide transcript=Glyma.17g040500.2 locus=Glyma.17g040500 ID=Glyma.17g040500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEVNIEKTLLMCKSFMKEVKIWGCLKQTGVSLRYMMEFGSNPTQKNLLISAQFLHKELPIRIARRAIELHSLPHGLSHMPPVLKVRHWYLDSFREIISFPEIKNMNDEKEFTELIKAIKVRHNNVVPTMALGVQQLKNVFEDPDEIDEFLDRFYMSRIGIRMLIGQHVELHNPNPPPNCVGYIHTNMSPVNVARNASEDARSMCYREYGSAAEVRIYGDPDFTFPYVPAHLHLMVFELVKNSLRAVQERFMDSDEVAPPIRIIIADGIEDVTIKVSFYNF*






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