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Report for Sequence Feature Glyma.17g037900

Feature Type:gene_model
Chromosome:Gm17
Start:2801764
stop:2804960
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g037900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G17240.1AT lipoamide dehydrogenase 2 JGI N/AIEA
GO:0008033GO-bp tRNA processing JGI N/AIEA
GO:0022900GO-bp electron transport chain EnsemblGenomesN/AIEA
GO:0045454GO-bp cell redox homeostasis EnsemblGenomesN/AIEA
GO:0045454GO-bp cell redox homeostasis JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0005623GO-cc cell EnsemblGenomesN/AIEA
GO:0004148GO-mf dihydrolipoyl dehydrogenase activity EnsemblGenomesN/AIEA
GO:0009055GO-mf electron transfer activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0016668GO-mf oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor EnsemblGenomesN/AIEA
GO:0050660GO-mf flavin adenine dinucleotide binding EnsemblGenomesN/AIEA
GO:0050660GO-mf flavin adenine dinucleotide binding JGI N/AIEA
KOG1335 KOG Dihydrolipoamide dehydrogenase JGI N/AIEA
PTHR22912Panther DISULFIDE OXIDOREDUCTASE JGI N/AIEA
PTHR22912:SF20Panther DIHYDROLIPOYL DEHYDROGENASE, MITOCHONDRIAL JGI N/AIEA
PF00070PFAM Pyridine nucleotide-disulphide oxidoreductase JGI N/AIEA
PF02852PFAM Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JGI N/AIEA
PF07992PFAM Pyridine nucleotide-disulphide oxidoreductase JGI N/AIEA
GLYCLEAV-PWYSoyCyc9 glycine cleavage Plant Metabolic Network ISS
PWY-5046SoyCyc9 2-oxoisovalerate decarboxylation to isobutanoyl-CoA Plant Metabolic Network ISS
PWY-5084SoyCyc9 2-oxoglutarate decarboxylation to succinyl-CoA Plant Metabolic Network ISS
PWY-5173SoyCyc9 superpathway of acetyl-CoA biosynthesis Plant Metabolic Network ISS
PWY-5464SoyCyc9 superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle Plant Metabolic Network ISS
PYRUVDEHYD-PWYSoyCyc9 pyruvate decarboxylation to acetyl CoA Plant Metabolic Network ISS
GN7V-44330SoyCyc9-rxn leghemoglobin reductase Plant Metabolic Network ISS

Expression Patterns of Glyma.17g037900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g037900
ParalogEvidenceComments
Glyma.07g232900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g037900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g04210 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g037900
>Glyma.17g037900.1 sequence-type=CDS polypeptide=Glyma.17g037900.1.p locus=Glyma.17g037900 ID=Glyma.17g037900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGATGGCAAGCCTGGCTCGACGGAAGGGTTACGCCGTCGTTTTGTCGTCGAGGTCGTCGTTTTGTCTGACAAGCTGGAGGGGATTCGCGTCCGGATCTGACGAAAACGACGTCGTCGTCATCGGCGGCGGTCCCGGCGGCTACGTGGCCGCCATCAAAGCCGCGCAGCTCGGTCTGAAAACCACTTGCATCGAAAAGCGTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGGCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCCAACCATGGGGTCAAGTTTTCATCTGTTGAGGTTGATTTGCCAGCCATGATGGCCCAAAAAGATAAAGCAGTTTCTAATCTTACCAAGGGTATTGAAGGTCTATTCAAGAAAAACAAGGTAAACTATGTCAAAGGTTATGGCAAATTTGTTTCACCATCTGAAGTCTCTGTGGACACCACTGAAGGTGGAAATACTGTTGTGAAAGGCAAGCATATTATAATTGCCACTGGCTCGGATGTGAAATCATTGCCTGGCGTCACTATTGATGAAAAGAAAGTCGTATCATCAACGGGGGCTCTTGCTTTGACTGAAATCCCCAAGAGACTCGTAGTCATTGGGGCAGGCTACATTGGGCTGGAAATGGGCTCCGTATGGGGCCGTCTTGGCACCGAGATAACAGTTGTTGAATTTGCATCGGAGATTGTTCCAACCATGGATGCAGAGGTCCGAAAGCAGTTTCAGCGTTCTCTTGAGAAGCAAGGCCTGAAATTCAAGCTGAAGACAAAGGTAGTTGGAGTTGATACTTCTGGGGATGGTGTGAAGCTAACTCTTGAACCGGCTGCTGGTGGTGATCAAACTACACTTGAAGCAGATGTTGTCCTTGTATCTGCTGGTAGGACTCCATTCACTGCTGGACTTGGATTGGACAAGATAGGTGTTGAAACTGACAAGATTGGACGGATTTTGGTAAACGAACGATTTGCCACAAATGTCTCTGGTGTTTATGCAATTGGAGATGTAATTCCAGGCCCAATGTTGGCACACAAGGCAGAAGAAGACGGTGTTGCTTGTGTTGAGTACATAGCTGGTAAGGTGGGCCATGTGGATTATGACAAAGTCCCCGGTGTTGTCTATACAATGCCCGAGGTTGCATCTGTTGGGAAGACAGAGGAGCAGGTGAAGGAACTTGGAGTTGAATACCGTGTTGGCAAGTTCCCGTTCATGGCTAATAGCAGAGCTAAGGCAATTGACAATGCTGAAGGACTGGTGAAGATATTGGCTGAAAAGGAGACAGACAAGATATTGGGAGTGCACATTATGGCACCCAATGCAGGAGAGCTTATTCATGAAGCAGCAATAGCACTACAGTATGATGCATCTAGTGAGGACATTGCACGTGTGTGCCATGCACATCCAACAATGAGCGAGGCTGTGAAAGAAGCCGCAATGGCCACTTATGACAAGCCCATTCACATTTAA
Predicted protein sequences of Glyma.17g037900
>Glyma.17g037900.1.p sequence-type=predicted peptide transcript=Glyma.17g037900.1 locus=Glyma.17g037900 ID=Glyma.17g037900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAMASLARRKGYAVVLSSRSSFCLTSWRGFASGSDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGTLGGTCLNVGCIPSKALLHSSHMYHEAKHAFANHGVKFSSVEVDLPAMMAQKDKAVSNLTKGIEGLFKKNKVNYVKGYGKFVSPSEVSVDTTEGGNTVVKGKHIIIATGSDVKSLPGVTIDEKKVVSSTGALALTEIPKRLVVIGAGYIGLEMGSVWGRLGTEITVVEFASEIVPTMDAEVRKQFQRSLEKQGLKFKLKTKVVGVDTSGDGVKLTLEPAAGGDQTTLEADVVLVSAGRTPFTAGLGLDKIGVETDKIGRILVNERFATNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYIAGKVGHVDYDKVPGVVYTMPEVASVGKTEEQVKELGVEYRVGKFPFMANSRAKAIDNAEGLVKILAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAVKEAAMATYDKPIHI*






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