Glyma.17g037100

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.17g037100): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.17g037100): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.17g037100

Feature Type:	gene_model
Chromosome:	Gm17
Start:	2702083
stop:	2707935
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.17g037100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G06510.1	AT	Glycosyl hydrolase superfamily protein	JGI	N/A	IEA
GO:0005975	GO-bp	carbohydrate metabolic process	EnsemblGenomes	N/A	IEA
GO:0005975	GO-bp	carbohydrate metabolic process	JGI	N/A	IEA
GO:0008152	GO-bp	metabolic process	EnsemblGenomes	N/A	IEA
GO:1901657	GO-bp	glycosyl compound metabolic process	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0004553	GO-mf	hydrolase activity, hydrolyzing O-glycosyl compounds	EnsemblGenomes	N/A	IEA
GO:0004553	GO-mf	hydrolase activity, hydrolyzing O-glycosyl compounds	JGI	N/A	IEA
GO:0008422	GO-mf	beta-glucosidase activity	EnsemblGenomes	N/A	IEA
GO:0016798	GO-mf	hydrolase activity, acting on glycosyl bonds	EnsemblGenomes	N/A	IEA
KOG0626	KOG	Beta-glucosidase, lactase phlorizinhydrolase, and related proteins	JGI	N/A	IEA
PTHR10353	Panther	GLYCOSYL HYDROLASE	JGI	N/A	IEA
PF00232	PFAM	Glycosyl hydrolase family 1	JGI	N/A	IEA
GN7V-42427	SoyCyc9-rxn	β-glucosidase	Plant Metabolic Network		ISS

Proteins Associated with Glyma.17g037100

Locus	Gene Symbol	Protein Name
	SFR2	beta-glycosidase-like

Expression Patterns of Glyma.17g037100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g037100 not represented in the dataset	Glyma.17g037100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.17g037100

Paralog	Evidence	Comments
Glyma.07g236300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g037100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma17g04130	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.17g037100

Limit To All Plant Sequences

>Glyma.17g037100.2 sequence-type=transcript locus=Glyma.17g037100 ID=Glyma.17g037100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGTAACGTTATCCTAATAAAAAATATACTATCTAGCTAGAGAAACTCCATTTAAGTGCTACGCGCCACGTGGATAGAAGTCTCACTCTCAGTTCACTGAGTTCAGAAAATGCCGGTGAAGGAAGCGTTCACGTTCACGTGTTGTTAAGTTGAGTTAGTTTTGGTTTAGGATTTGGTTGGGTGAAGTGACGTGTGCACTTGAACTGTTCTTTCTTCTGTTTCTATGGCTTCCAAAGTTAGTTAGCAACACGCATTTCGATGACGGTGGTCGGACTCTTCCTCACTGCCACGAAGCTCGCCGGAGCTCTATTCACTCTCACCGTCGCCGCCAACGCCTTCTCCTACTCCCGCTTTCGCAAGAAGAACCTTCGCGGTTTCCGCTCTCCCATCGATGAATCCCAAGACACTCTCGCACACTTTAACGTCGCTGAAGGGGAAGATGGGTTTTTCTTTGGTTTGGCGACAGCGCCAGCACATGTTGAGGACAGGCTTGATGATGCTTGGATCCAGTTTGCTGAGAAAAAGAGTGGTGAAGGTGGTGGTGACTCTGAGGGGAAGCAGAGAGTGGATGCTGTGATTGGTTCTGCTTCTGGCGATGGTGGTTCCCAGCCGGCCATAACATCTCCGAGGAGCAGGAAGCCTCTCAAGGTGGCGATGGAGGCCATGATCAGGGGAATTGAGAAGTATATGGAAGTGGAAGGGAAAGAAAGAGAAGAAGAAGCCCGTCCTAATGTAACTGCTTGGCATAATGGAGGAGAGGTTAAGGTTTTGGTCTGATCCTGAAACAGAAATAAAGTTGGCCAAGGATACTGGTGTTACAGTTTTTCGCATGGGAATAGATTGGACAAGAATCATGCCAGTGGAGCCAGTAAGCAGCCTTAATCAATCTGTTAACTATGCTGCATTGGAACGGTATAAGTGGATTATCAATAGGGTTCGATCGTATGGAATGAAAGTGATGCTCACTCTTTTTCATCACTCGCTTCCACCCTGGGCTGGTGAGTATGGAGGTTGGAAGCTGGAAAAGACAGTGGATTATTTCATGGACTTTACCAGGCTTGTTGTAGACAGTGTCTCAGATTTGGTAGACTACTGGGTAACATTTAATGAGCCCCATGTCTTCTGTATGCTTACTTATTGTGCTGGAGCTTGGCCTGGTGGTCATCCTGATATGCTTGAGGCTGCTACTTCTGCACTTCCAACTGGTGTTTTCCAGCAGGCCATGCACTGGATGTCTATTGCACACTCAAAGGCATACGACTACATCCATGGACTAAGTAACCCATTAAATTCAATAGTCGGTGTAGCACACCATGTGTCATTTATGCGACCCTATGGTTTGTTTGATATTGCTGCTGTTTCACTGGCTAATTCATTGACTCTCTTCCCATACATTGATGAAATATCTGAGAAGCTGGACTATATAGGCATAAACTACTATGGGCAGGAAGTGGTTTCAGGTGCAGGCCTGAAGCTGGTGGAAAATGATGAGTACAGTGAATCTGGTCGTGGGGTATACCCTGATGGCTTATACCGCATGCTGCTTCAATACCATGAAAGATACAAACATCTAAATATTCCCTTCATCATTACTGAAAATGGGGTTTCAGATGAGACAGATTTGATTCGCCGGCCATATCTCTTGGAGCATTTGCTTGCTATTTATGCTGCCatgatcatgGGTGTGCGTGTACTTGGTTACCTGTTCTGGACTATTTCTGATAACTGGGAGTGGGCTGATGGATATGGTCCCAAGTTTGGACTTGTTGCGGTTGACCGGGCAAATAATCTTGCACGGACCCCTCGCCCCTCTTACCATCTATTTTCTAAGATTGTGAATACAGGCAAAGTTACACATGAAGATCGTGAAAGAGCATGGGATGAACTTCAAAGAGTTGCAAAAGAGAAGAAAACAAGACCATTTTATCGGGCTGTGGATAAACACCGTTTAATGTATGCAGGTGGACTTGACAAACCTGAACAGCGACCTTATATAGAACGAGATTGGCGGTTTGGTCATTATCAGATGGATGGACTCCAGGATCCCTTGAGCCGCTTCTCAAGATCCATTTTTCGACCATTCTCCCTCTTCTCCCTTAAAAGGAAACCAAAATCTCAAAAGAAGAATGCCAAATTGATTCTCCAGCCTCTTGAAACTTAGCAATTGATTTGTCTTGTCCCAGATTCTATATTTTTGAGTGATGAGCACTTTCCATTTCAATATTCAACCCCAGACACATCTGTCTAACTTTCATTATATGTGTAATATTGTACTGGGTGTATTATGGTGCATTCTTGTTGTAAAGCTTATTTGTCTCATTTTTACCAAGAAGTCAACGTATTAATATAATCACTGGACGGTAATATGTGATGCCTGTCCCTGTTAGCGGAATGTCATGTATTGTATACCCTGGACATACACAAAGAATGTAAATCGCTGATCACCACTTTATGTAAGCAAGAGCCTTCCCTTTTTTCTTTCTTTTTTTCTCCCTAAGGAACCTTGATCTCCTATTTTCTATGGAGTGAGATATTTTGCATCTAAGTTTTCCCAATTCATACTGGTCATGGCATATCAGTATCAGTATATTATACAAATCTCGTCTCCTTATTGAAGAGAAAGATCAAGATCAGGGAATTTCCCGCTTCTTGGAAATGGACGAGAATTGCATTGTCTCACAGTCGGAGCCGCATTAGTTATCACCTTTGTATAACATGTATTCCAGTTTTGCTGCATTATTCAGATAATATATAATACATAAATATATGAAAGATTTTCCAGA

Coding sequences of Glyma.17g037100

Limit To All Plant Sequences

>Glyma.17g037100.1 sequence-type=CDS polypeptide=Glyma.17g037100.1.p locus=Glyma.17g037100 ID=Glyma.17g037100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACGGTGGTCGGACTCTTCCTCACTGCCACGAAGCTCGCCGGAGCTCTATTCACTCTCACCGTCGCCGCCAACGCCTTCTCCTACTCCCGCTTTCGCAAGAAGAACCTTCGCGGTTTCCGCTCTCCCATCGATGAATCCCAAGACACTCTCGCACACTTTAACGTCGCTGAAGGGGAAGATGGGTTTTTCTTTGGTTTGGCGACAGCGCCAGCACATGTTGAGGACAGGCTTGATGATGCTTGGATCCAGTTTGCTGAGAAAAAGAGTGGTGAAGGTGGTGGTGACTCTGAGGGGAAGCAGAGAGTGGATGCTGTGATTGGTTCTGCTTCTGGCGATGGTGGTTCCCAGCCGGCCATAACATCTCCGAGGAGCAGGAAGCCTCTCAAGGTGGCGATGGAGGCCATGATCAGGGGAATTGAGAAGTATATGGAAGTGGAAGGGAAAGAAAGAGAAGAAGAAGCCCGTCCTAATGTAACTGCTTGGCATAATGTTCCATGCCCGGAGGAGAGGTTAAGGTTTTGGTCTGATCCTGAAACAGAAATAAAGTTGGCCAAGGATACTGGTGTTACAGTTTTTCGCATGGGAATAGATTGGACAAGAATCATGCCAGTGGAGCCAGTAAGCAGCCTTAATCAATCTGTTAACTATGCTGCATTGGAACGGTATAAGTGGATTATCAATAGGGTTCGATCGTATGGAATGAAAGTGATGCTCACTCTTTTTCATCACTCGCTTCCACCCTGGGCTGGTGAGTATGGAGGTTGGAAGCTGGAAAAGACAGTGGATTATTTCATGGACTTTACCAGGCTTGTTGTAGACAGTGTCTCAGATTTGGTAGACTACTGGGTAACATTTAATGAGCCCCATGTCTTCTGTATGCTTACTTATTGTGCTGGAGCTTGGCCTGGTGGTCATCCTGATATGCTTGAGGCTGCTACTTCTGCACTTCCAACTGGTGTTTTCCAGCAGGCCATGCACTGGATGTCTATTGCACACTCAAAGGCATACGACTACATCCATGGACTAAGTAACCCATTAAATTCAATAGTCGGTGTAGCACACCATGTGTCATTTATGCGACCCTATGGTTTGTTTGATATTGCTGCTGTTTCACTGGCTAATTCATTGACTCTCTTCCCATACATTGATGAAATATCTGAGAAGCTGGACTATATAGGCATAAACTACTATGGGCAGGAAGTGGTTTCAGGTGCAGGCCTGAAGCTGGTGGAAAATGATGAGTACAGTGAATCTGGTCGTGGGGTATACCCTGATGGCTTATACCGCATGCTGCTTCAATACCATGAAAGATACAAACATCTAAATATTCCCTTCATCATTACTGAAAATGGGGTTTCAGATGAGACAGATTTGATTCGCCGGCCATATCTCTTGGAGCATTTGCTTGCTATTTATGCTGCCATGATCATGGGTGTGCGTGTACTTGGTTACCTGTTCTGGACTATTTCTGATAACTGGGAGTGGGCTGATGGATATGGTCCCAAGTTTGGACTTGTTGCGGTTGACCGGGCAAATAATCTTGCACGGACCCCTCGCCCCTCTTACCATCTATTTTCTAAGATTGTGAATACAGGCAAAGTTACACATGAAGATCGTGAAAGAGCATGGGATGAACTTCAAAGAGTTGCAAAAGAGAAGAAAACAAGACCATTTTATCGGGCTGTGGATAAACACCGTTTAATGTATGCAGGTGGACTTGACAAACCTGAACAGCGACCTTATATAGAACGAGATTGGCGGTTTGGTCATTATCAGATGGATGGACTCCAGGATCCCTTGAGCCGCTTCTCAAGATCCATTTTTCGACCATTCTCCCTCTTCTCCCTTAAAAGGAAACCAAAATCTCAAAAGAAGAATGCCAAATTGATTCTCCAGCCTCTTGAAACTTAG

>Glyma.17g037100.2 sequence-type=CDS polypeptide=Glyma.17g037100.2.p locus=Glyma.17g037100 ID=Glyma.17g037100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGAGAGGTTAAGGTTTTGGTCTGATCCTGAAACAGAAATAAAGTTGGCCAAGGATACTGGTGTTACAGTTTTTCGCATGGGAATAGATTGGACAAGAATCATGCCAGTGGAGCCAGTAAGCAGCCTTAATCAATCTGTTAACTATGCTGCATTGGAACGGTATAAGTGGATTATCAATAGGGTTCGATCGTATGGAATGAAAGTGATGCTCACTCTTTTTCATCACTCGCTTCCACCCTGGGCTGGTGAGTATGGAGGTTGGAAGCTGGAAAAGACAGTGGATTATTTCATGGACTTTACCAGGCTTGTTGTAGACAGTGTCTCAGATTTGGTAGACTACTGGGTAACATTTAATGAGCCCCATGTCTTCTGTATGCTTACTTATTGTGCTGGAGCTTGGCCTGGTGGTCATCCTGATATGCTTGAGGCTGCTACTTCTGCACTTCCAACTGGTGTTTTCCAGCAGGCCATGCACTGGATGTCTATTGCACACTCAAAGGCATACGACTACATCCATGGACTAAGTAACCCATTAAATTCAATAGTCGGTGTAGCACACCATGTGTCATTTATGCGACCCTATGGTTTGTTTGATATTGCTGCTGTTTCACTGGCTAATTCATTGACTCTCTTCCCATACATTGATGAAATATCTGAGAAGCTGGACTATATAGGCATAAACTACTATGGGCAGGAAGTGGTTTCAGGTGCAGGCCTGAAGCTGGTGGAAAATGATGAGTACAGTGAATCTGGTCGTGGGGTATACCCTGATGGCTTATACCGCATGCTGCTTCAATACCATGAAAGATACAAACATCTAAATATTCCCTTCATCATTACTGAAAATGGGGTTTCAGATGAGACAGATTTGATTCGCCGGCCATATCTCTTGGAGCATTTGCTTGCTATTTATGCTGCCATGATCATGGGTGTGCGTGTACTTGGTTACCTGTTCTGGACTATTTCTGATAACTGGGAGTGGGCTGATGGATATGGTCCCAAGTTTGGACTTGTTGCGGTTGACCGGGCAAATAATCTTGCACGGACCCCTCGCCCCTCTTACCATCTATTTTCTAAGATTGTGAATACAGGCAAAGTTACACATGAAGATCGTGAAAGAGCATGGGATGAACTTCAAAGAGTTGCAAAAGAGAAGAAAACAAGACCATTTTATCGGGCTGTGGATAAACACCGTTTAATGTATGCAGGTGGACTTGACAAACCTGAACAGCGACCTTATATAGAACGAGATTGGCGGTTTGGTCATTATCAGATGGATGGACTCCAGGATCCCTTGAGCCGCTTCTCAAGATCCATTTTTCGACCATTCTCCCTCTTCTCCCTTAAAAGGAAACCAAAATCTCAAAAGAAGAATGCCAAATTGATTCTCCAGCCTCTTGAAACTTAG

Predicted protein sequences of Glyma.17g037100

Limit To All Plant Sequences

>Glyma.17g037100.1.p sequence-type=predicted peptide transcript=Glyma.17g037100.1 locus=Glyma.17g037100 ID=Glyma.17g037100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTVVGLFLTATKLAGALFTLTVAANAFSYSRFRKKNLRGFRSPIDESQDTLAHFNVAEGEDGFFFGLATAPAHVEDRLDDAWIQFAEKKSGEGGGDSEGKQRVDAVIGSASGDGGSQPAITSPRSRKPLKVAMEAMIRGIEKYMEVEGKEREEEARPNVTAWHNVPCPEERLRFWSDPETEIKLAKDTGVTVFRMGIDWTRIMPVEPVSSLNQSVNYAALERYKWIINRVRSYGMKVMLTLFHHSLPPWAGEYGGWKLEKTVDYFMDFTRLVVDSVSDLVDYWVTFNEPHVFCMLTYCAGAWPGGHPDMLEAATSALPTGVFQQAMHWMSIAHSKAYDYIHGLSNPLNSIVGVAHHVSFMRPYGLFDIAAVSLANSLTLFPYIDEISEKLDYIGINYYGQEVVSGAGLKLVENDEYSESGRGVYPDGLYRMLLQYHERYKHLNIPFIITENGVSDETDLIRRPYLLEHLLAIYAAMIMGVRVLGYLFWTISDNWEWADGYGPKFGLVAVDRANNLARTPRPSYHLFSKIVNTGKVTHEDRERAWDELQRVAKEKKTRPFYRAVDKHRLMYAGGLDKPEQRPYIERDWRFGHYQMDGLQDPLSRFSRSIFRPFSLFSLKRKPKSQKKNAKLILQPLET*

>Glyma.17g037100.2.p sequence-type=predicted peptide transcript=Glyma.17g037100.2 locus=Glyma.17g037100 ID=Glyma.17g037100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEERLRFWSDPETEIKLAKDTGVTVFRMGIDWTRIMPVEPVSSLNQSVNYAALERYKWIINRVRSYGMKVMLTLFHHSLPPWAGEYGGWKLEKTVDYFMDFTRLVVDSVSDLVDYWVTFNEPHVFCMLTYCAGAWPGGHPDMLEAATSALPTGVFQQAMHWMSIAHSKAYDYIHGLSNPLNSIVGVAHHVSFMRPYGLFDIAAVSLANSLTLFPYIDEISEKLDYIGINYYGQEVVSGAGLKLVENDEYSESGRGVYPDGLYRMLLQYHERYKHLNIPFIITENGVSDETDLIRRPYLLEHLLAIYAAMIMGVRVLGYLFWTISDNWEWADGYGPKFGLVAVDRANNLARTPRPSYHLFSKIVNTGKVTHEDRERAWDELQRVAKEKKTRPFYRAVDKHRLMYAGGLDKPEQRPYIERDWRFGHYQMDGLQDPLSRFSRSIFRPFSLFSLKRKPKSQKKNAKLILQPLET*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain