SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G21800.1 | AT | P-loop containing nucleoside triphosphate hydrolases superfamily protein | JGI | N/A | IEA |
| GO:0019083 | GO-bp | viral transcription | JGI | N/A | IEA |
| GO:0044376 | GO-bp | obsolete RNA polymerase II complex import to nucleus | EnsemblGenomes | N/A | IEA |
| GO:1990022 | GO-bp | obsolete RNA polymerase III complex import into nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005622 | GO-cc | intracellular | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | JGI | N/A | IEA |
| GO:0003924 | GO-mf | GTPase activity | EnsemblGenomes | N/A | IEA |
| GO:0003924 | GO-mf | GTPase activity | JGI | N/A | IEA |
| GO:0005525 | GO-mf | GTP binding | JGI | N/A | IEA |
| KOG1532 | KOG | GTPase XAB1, interacts with DNA repair protein XPA | JGI | N/A | IEA |
| PTHR21231 | Panther | XPA-BINDING PROTEIN 1-RELATED | JGI | N/A | IEA |
| PTHR21231:SF1 | Panther | JGI | N/A | IEA | |
| PF03029 | PFAM | Conserved hypothetical ATP binding protein | JGI | N/A | IEA |
|
Glyma.17g035700 not represented in the dataset |
Glyma.17g035700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.07g237800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma17g03980 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g035700.2 sequence-type=transcript locus=Glyma.17g035700 ID=Glyma.17g035700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 TTTTTCGGTTTCTTCTCGTCGGAGTTCGTCAGGGCAAAATAAAAGCAGGCGAAACGTAGTGTCGTTTTCCGTAGCGGCACGCTGCGTTCATAACCCCTCATTTTCATTGCGCAAAGAAGTAAAACCCCAACTTCCCTTTCGTCTCTGCCCTCACCTGCAGAACAGAACGCGTCGTCTCATTTCTCTCCGCATCGCCGTCGCAACAACACCGCCGAGAAGATAACCTCTTCAATCGGAAAATGAACGCTGATAACGGTTCCAGAGACGCCAAACTCGACAACCAACACGTTTCTCTCTTTCCACTTTTTTCTCTGTTCTCTCTCTTAGGAAACGAAATATACTGTAAATTGAAATTCGATTCCACTATTTAACGGGGAAGTTCAGTTCGCCGTTAGATTGCGTTGTTGACTTCACGCGACTAGGCAAAAGACAAAGAAAAGGAGGAACTCACCGAGAATATGAACAAGTTGCATATTGAAGGATCTTCGTCTGGGAGTGGATCATCTAGCTTCAGAAGAAAACCTGTCATCATTATAGTTGTGGGAATGGCAGGGAGTGGGAAGACAACACTCATGCATAGGTTGGTATGCCATACACATTTGAAAGACATTCGGGGTTATGTGGTGAATCTCGATCCTGCCGTCATGACACTCCCATATGCTGCTAACATTGATGTGAGAGACACTGTTAAATACAAAGAAGTCATGAAGCAGTTTAACCTTGGCCCTAATGGTGGAATTTTGACTTCCCTGAACTTGTTTGCCACCAAGTTTGATGAGGTAATTTCTGTAATTGAGAAACGGGCAGATCAACTTGACTATGTTCTTGTGGATACCCCTGGTCAGATTGAAATATTTACCTGGTCTGCTTCTGGTGCTATCATTACAGAAGCTTTTGCATCTACATTTCCCACTGTAGTTGCCTATGTAGTTGATACACCCCGTTCAGAAGATCCCACCACTTTCATGAGCAACATGTTGTATGCTTGTAGTATCCTCTACAAGACAAGGTTACCTCTCATCTTGACTTTCAACAAGGTTGATGTAGCAGCACATCAGTTTGCTTTGGAGTGGATGGAGGATTTTGAGGCGTTCCAAACAGCCGCAAGTTCAGATCACTCGTACTCATCAACTTTAACTCAGAGCCTTTCTCTTGTGCTAGATGAATTCTACAACAATTTAAAATCTGTTGGAGTTTCTGCAGTTTCTGGTGTAGGAATGGAAGCCTTCTTTAATGCTGTCGAAGCCAGTGCAGAGGAATACATGGAGACATACAAGGCTGATCTTGATAAAAGACGTGAAGAGAAGCAACGTTTGGAGGAAGACCGCAGGAAGGAGAGCATGGATAAACTGAGGAGGGACATGGAGAAATCTGGGGGAGAAACTGTAGTCTTGAGCACTGGTTTGAAGGACAAAGAAGCAAGTAAAAGTatgatggatgaggaagacgaggacgaggaaatggatgatgatgatgatgatgatttggggatatatactgaagaggaagatgctatagatgaggacgaagatgaggaggttgatAGGTTCGGCTTCTGATGTGATTCGTCACCAGTTGGACTGCATCAGAGCTAGATCTTTGTATAGCACCTTGACCTTCATTTGGTAAATGTATACAAACCTTGAAAGTTTGACTACTAATTAATCAACCACTTTATTTCATATAAGCTGTCAGCACTATTTGCTCTAGGTTCTTTACGTTTATGTTTTTGTACTACTTGCAGAGATAGTTGTGCTTGATGCAGCTTGTTTTTGGACTTATAAATTTGAGAATAGTGATTACTCAATTACAT
>Glyma.17g035700.1 sequence-type=CDS polypeptide=Glyma.17g035700.1.p locus=Glyma.17g035700 ID=Glyma.17g035700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAACGCTGATAACGGTTCCAGAGACGCCAAACTCGACAACCAACACGCAAAAGACAAAGAAAAGGAGGAACTCACCGAGAATATGAACAAGTTGCATATTGAAGGATCTTCGTCTGGGAGTGGATCATCTAGCTTCAGAAGAAAACCTGTCATCATTATAGTTGTGGGAATGGCAGGGAGTGGGAAGACAACACTCATGCATAGGTTGGTATGCCATACACATTTGAAAGACATTCGGGGTTATGTGGTGAATCTCGATCCTGCCGTCATGACACTCCCATATGCTGCTAACATTGATGTGAGAGACACTGTTAAATACAAAGAAGTCATGAAGCAGTTTAACCTTGGCCCTAATGGTGGAATTTTGACTTCCCTGAACTTGTTTGCCACCAAGTTTGATGAGGTAATTTCTGTAATTGAGAAACGGGCAGATCAACTTGACTATGTTCTTGTGGATACCCCTGGTCAGATTGAAATATTTACCTGGTCTGCTTCTGGTGCTATCATTACAGAAGCTTTTGCATCTACATTTCCCACTGTAGTTGCCTATGTAGTTGATACACCCCGTTCAGAAGATCCCACCACTTTCATGAGCAACATGTTGTATGCTTGTAGTATCCTCTACAAGACAAGGTTACCTCTCATCTTGACTTTCAACAAGGTTGATGTAGCAGCACATCAGTTTGCTTTGGAGTGGATGGAGGATTTTGAGGCGTTCCAAACAGCCGCAAGTTCAGATCACTCGTACTCATCAACTTTAACTCAGAGCCTTTCTCTTGTGCTAGATGAATTCTACAACAATTTAAAATCTGTTGGAGTTTCTGCAGTTTCTGGTGTAGGAATGGAAGCCTTCTTTAATGCTGTCGAAGCCAGTGCAGAGGAATACATGGAGACATACAAGGCTGATCTTGATAAAAGACGTGAAGAGAAGCAACGTTTGGAGGAAGACCGCAGGAAGGAGAGCATGGATAAACTGAGGAGGGACATGGAGAAATCTGGGGGAGAAACTGTAGTCTTGAGCACTGGTTTGAAGGACAAAGAAGCAAGTAAAAGTATGATGGATGAGGAAGACGAGGACGAGGAAATGGATGATGATGATGATGATGATTTGGGGATATATACTGAAGAGGAAGATGCTATAGATGAGGACGAAGATGAGGAGGTTGATAGGTTCGGCTTCTGA >Glyma.17g035700.2 sequence-type=CDS polypeptide=Glyma.17g035700.2.p locus=Glyma.17g035700 ID=Glyma.17g035700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAACAAGTTGCATATTGAAGGATCTTCGTCTGGGAGTGGATCATCTAGCTTCAGAAGAAAACCTGTCATCATTATAGTTGTGGGAATGGCAGGGAGTGGGAAGACAACACTCATGCATAGGTTGGTATGCCATACACATTTGAAAGACATTCGGGGTTATGTGGTGAATCTCGATCCTGCCGTCATGACACTCCCATATGCTGCTAACATTGATGTGAGAGACACTGTTAAATACAAAGAAGTCATGAAGCAGTTTAACCTTGGCCCTAATGGTGGAATTTTGACTTCCCTGAACTTGTTTGCCACCAAGTTTGATGAGGTAATTTCTGTAATTGAGAAACGGGCAGATCAACTTGACTATGTTCTTGTGGATACCCCTGGTCAGATTGAAATATTTACCTGGTCTGCTTCTGGTGCTATCATTACAGAAGCTTTTGCATCTACATTTCCCACTGTAGTTGCCTATGTAGTTGATACACCCCGTTCAGAAGATCCCACCACTTTCATGAGCAACATGTTGTATGCTTGTAGTATCCTCTACAAGACAAGGTTACCTCTCATCTTGACTTTCAACAAGGTTGATGTAGCAGCACATCAGTTTGCTTTGGAGTGGATGGAGGATTTTGAGGCGTTCCAAACAGCCGCAAGTTCAGATCACTCGTACTCATCAACTTTAACTCAGAGCCTTTCTCTTGTGCTAGATGAATTCTACAACAATTTAAAATCTGTTGGAGTTTCTGCAGTTTCTGGTGTAGGAATGGAAGCCTTCTTTAATGCTGTCGAAGCCAGTGCAGAGGAATACATGGAGACATACAAGGCTGATCTTGATAAAAGACGTGAAGAGAAGCAACGTTTGGAGGAAGACCGCAGGAAGGAGAGCATGGATAAACTGAGGAGGGACATGGAGAAATCTGGGGGAGAAACTGTAGTCTTGAGCACTGGTTTGAAGGACAAAGAAGCAAGTAAAAGTATGATGGATGAGGAAGACGAGGACGAGGAAATGGATGATGATGATGATGATGATTTGGGGATATATACTGAAGAGGAAGATGCTATAGATGAGGACGAAGATGAGGAGGTTGATAGGTTCGGCTTCTGA
>Glyma.17g035700.1.p sequence-type=predicted peptide transcript=Glyma.17g035700.1 locus=Glyma.17g035700 ID=Glyma.17g035700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MNADNGSRDAKLDNQHAKDKEKEELTENMNKLHIEGSSSGSGSSSFRRKPVIIIVVGMAGSGKTTLMHRLVCHTHLKDIRGYVVNLDPAVMTLPYAANIDVRDTVKYKEVMKQFNLGPNGGILTSLNLFATKFDEVISVIEKRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVAYVVDTPRSEDPTTFMSNMLYACSILYKTRLPLILTFNKVDVAAHQFALEWMEDFEAFQTAASSDHSYSSTLTQSLSLVLDEFYNNLKSVGVSAVSGVGMEAFFNAVEASAEEYMETYKADLDKRREEKQRLEEDRRKESMDKLRRDMEKSGGETVVLSTGLKDKEASKSMMDEEDEDEEMDDDDDDDLGIYTEEEDAIDEDEDEEVDRFGF* >Glyma.17g035700.2.p sequence-type=predicted peptide transcript=Glyma.17g035700.2 locus=Glyma.17g035700 ID=Glyma.17g035700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MNKLHIEGSSSGSGSSSFRRKPVIIIVVGMAGSGKTTLMHRLVCHTHLKDIRGYVVNLDPAVMTLPYAANIDVRDTVKYKEVMKQFNLGPNGGILTSLNLFATKFDEVISVIEKRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVAYVVDTPRSEDPTTFMSNMLYACSILYKTRLPLILTFNKVDVAAHQFALEWMEDFEAFQTAASSDHSYSSTLTQSLSLVLDEFYNNLKSVGVSAVSGVGMEAFFNAVEASAEEYMETYKADLDKRREEKQRLEEDRRKESMDKLRRDMEKSGGETVVLSTGLKDKEASKSMMDEEDEDEEMDDDDDDDLGIYTEEEDAIDEDEDEEVDRFGF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
