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Report for Sequence Feature Glyma.17g029900

Feature Type:gene_model
Chromosome:Gm17
Start:2200534
stop:2202630
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g029900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G08570.1AT Heavy metal transport/detoxification superfamily protein JGI N/AIEA
GO:0030001GO-bp metal ion transport EnsemblGenomesN/AIEA
GO:0030001GO-bp metal ion transport JGI N/AIEA
GO:0046916GO-bp cellular transition metal ion homeostasis EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding JGI N/AIEA
GO:0046914GO-mf transition metal ion binding EnsemblGenomesN/AIEA
KOG1603 KOG Copper chaperone JGI N/AIEA
PTHR22814Panther COPPER TRANSPORT PROTEIN ATOX1-RELATED JGI N/AIEA
PTHR22814:SF35Panther JGI N/AIEA
PF00403PFAM Heavy-metal-associated domain JGI N/AIEA

Expression Patterns of Glyma.17g029900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g029900
ParalogEvidenceComments
Glyma.07g244000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g029900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g03320 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g029900
>Glyma.17g029900.1 sequence-type=CDS polypeptide=Glyma.17g029900.1.p locus=Glyma.17g029900 ID=Glyma.17g029900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCGGGATTCACAGGCACCTCGTGTCACGCAAATACAGGTCCGAGTGGACTGCAAAGGGTGCGTGCAGAAGATAAAAAAAACACTAAATGGAATTCATGGTATACATGATCTTCGTGTTGACCTACTTCAACAAAAGCTCACAATTATTGGGTGGGCAGATCCAGAACAAGTTGTCAAAGCAATTAAGAAGACAAAAAAAAATGCCACCATTTGCTCTAGTATTGAACTAACGTCTCCATCTAAACCAACTGAACCAGAGCCAAAAGAAAATGCACCAGTCCCTGATGCAACACAACCACCACCAGCACGAGTTCCACCACCTCAAGCAAGCCCACCATCAAAACCACCGCCTCAACGGCCACCACCTGAAGCAACACCACCATCGCACATACCTACACAGCACAAGACAAGCCGGCAGTGGCAGAACAACACAGGAATTGAAGAATTAGAACAGGTTCATGTGAAGCAATACTATCATCTGCCTAACAACGTTAACAGATTCAGTTCTGGCCGCAACCATGTTGAACACTGGCACAGATACCATAATGGCCCTGTATTTCTACAAGAGTCATCCCGACCCATGTATGTGACACACAGCTATAACACACACGTGCCTTCGTCAATCGTCACTGAATATGAATACGTCAGATCACCATCCAGACAAACACATTACAATTGTATAGAACACTACAGTGGAGATTACCAGAACGACAATGTAAACATCACATCCATGTTCAGCGATGATAATCCCAATGCATGTTGCATTGTCTAG
Predicted protein sequences of Glyma.17g029900
>Glyma.17g029900.1.p sequence-type=predicted peptide transcript=Glyma.17g029900.1 locus=Glyma.17g029900 ID=Glyma.17g029900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MARDSQAPRVTQIQVRVDCKGCVQKIKKTLNGIHGIHDLRVDLLQQKLTIIGWADPEQVVKAIKKTKKNATICSSIELTSPSKPTEPEPKENAPVPDATQPPPARVPPPQASPPSKPPPQRPPPEATPPSHIPTQHKTSRQWQNNTGIEELEQVHVKQYYHLPNNVNRFSSGRNHVEHWHRYHNGPVFLQESSRPMYVTHSYNTHVPSSIVTEYEYVRSPSRQTHYNCIEHYSGDYQNDNVNITSMFSDDNPNACCIV*






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