Glyma.17g029600

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Report for Sequence Feature Glyma.17g029600

Feature Type:	gene_model
Chromosome:	Gm17
Start:	2174403
stop:	2181055
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.17g029600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G16810.1	AT	pumilio 24	JGI	N/A	IEA
GO:0006417	GO-bp	regulation of translation	EnsemblGenomes	N/A	IEA
GO:0005730	GO-cc	nucleolus	EnsemblGenomes	N/A	IEA
GO:0003723	GO-mf	RNA binding	EnsemblGenomes	N/A	IEA
GO:0003729	GO-mf	mRNA binding	EnsemblGenomes	N/A	IEA
GO:0005488	GO-mf	binding	EnsemblGenomes	N/A	IEA
KOG2050	KOG	Puf family RNA-binding protein	JGI	N/A	IEA
PTHR13389	Panther	UNCHARACTERIZED	JGI	N/A	IEA

Expression Patterns of Glyma.17g029600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g029600 not represented in the dataset	Glyma.17g029600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.17g029600

Paralog	Evidence	Comments
Glyma.07g244300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g029600 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma17g03290	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.17g029600

Limit To All Plant Sequences

>Glyma.17g029600.2 sequence-type=transcript locus=Glyma.17g029600 ID=Glyma.17g029600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTGCCTTAGTATAAAGTATAAACCCTAGTAATCGTTTTTCTCGGAGTTAGACAGAGAGGGTTCCCTTTCCAGTGACAGGCAATAGCTGCAAGCAACTCAATCTCAGAGCTTAAGCAATGGCGGCGAAGAAGCATGACGCCGGAGACACCAAAAAGAGAAAGCGACTCAATACTGAAACTCACGAAGCTCCCAAGGCTTCGAAGCTCGTTGCCTCAAAGAAGCACAAACCAGACTCCGTTGCTAAAGACAACAAGAACAAGAAGACGGCTCCTCTTACCGGCCGAGAACGTCGTCTTCATTCCAAGGAACTAGCAGATGCTAGAAAAAAGAAGAGAAAGCGACATTTCACTCTTGAGCAAGAGCTTGCACGTCTATGGGAAAAGATGAGACGTCATGAGATTGCTAAAGAGGACAGAGCTAAGCTAGTGACTGAAGCTTTGCAAAAGATGAAGGGGAAGATTCCAGAGATTGCGGGCTCTCACATCTCATCTCGGATTCTTCAGACATGTGTCAAGCATTGTTCACAAGCTGAAAGAGATGCAGTATTTGAAGAGCTTCAGCCACATTTTCTAACTCTAGCATATAGTGCATATGCTGTTCACTTAGTGAAGAAGATGCTCGACAACGCTTCCAAGAAACAACTAGCAGGCTTTATCTCCACTCTCCATGGTCATGTTGCTCCTCTTCTTCGCCATATGGTTGGATCAGTTGTTGTTGAGCATGCTTATGAGTTAGCAAATGCTGCACAGAAGCAAGAACTGCTTTCGGAATTATACTCTACGGAACTTCGGTTGTTTAAGGATCTAGTCTCATTGAAAGAGAGCAGATTATTAGATGTGATGTCCAAGTTGGGTCTACAGAAAGGTTCAGTTCTGCGACATATGGCATCAGTGATTCAGCCAATTTTAGAGAAAGGGATAGTTGACCACTCTATTTTACACAGAGTCTTACTTGAATATTTTAGCATTGCTGATAAGTCATCTGTCACAGATATAATCCAACAGTTATCAAGTCCACTCATTGTTAGAATGATTGGTACGAGGGATGGAGCTAAAATTGGAATTCTTTGTGTAAAATATGGGAATGCCAAGGAAAGGAAGAAGATTATCAAAGGATTGAAGGGGCACATAGACAAAACAGCTTATCATCAATATGGGTGCATGGTGCTGGTTTGCATCCTTTCAGTTGTTGACGACACCAAACTGATAACAAAGGTTATCATTCGTGAGCTTCAGTCAATTTTAAAGGAGCTTGTTCTAGATAAGAATGGAAGGCGTCCCTTACTCCAATTACTACATCCTAATAGTTCACGTTATTTCAGTCCTGATGATCTTGCTTCTCTGAATTTATCTATACCTTCTCTGTCTCTCAAGGATCAGTCAGAAGCAAGCTCTCTGACAGAAACTTCGAAGGTTTCACTTGGTGACAAGGAATCCAAGGATGACATAGAGTTGGCATTGAACGAAGTTAATAAAGATAAAACTTCTGTGGATGATTCTGACTTAGCTGAGAGTGGGAAAAAAGACCCATTTGTCAGAAGGCAGGAGCTGTTGATCAAGAGTGGGCTTGCAGATAGTCTTCTTGATATATGTATTGAGAGCGTGGGAGAACTGATTCAGTCAAATTTTGGCAAAGAGGTCTTATATGAGGTAATAAAGATGATATTGATATTATAATTTCACAGGTTCTTTAAATTTGTCACCGAGCATTGCAGTTTTGGTAACTTCAATTGCACAAGCAGGTTGCAACAGGGGGTTCTGAGGGCATAATGCACCCAGCTTTAGGTGATAAGATAAATTCCCTCCACAATGCAGTAGCTTCTCTTGCAGCAATGCCTAAATCAGAAGATTCACAAGAGGAGCATGTCCTTGAAAATTTCCATTCAAGTCGCACCATTAGAAAACTGATTTTGGATTGCCCCAACTTTGCTTCCACCTTATGGGAAAAAGCTTTAAAAGGGAAAAGTGAGTTATGGGTGCATGGCCACAGCTGTAAGGTTATTTCTGCATTTTTGGAATCACCAGACCCGACTGTACAAAAACTTGTTAAAAAAGAGCTACAGCCTTTAATTGACAATGGAATTCTCAAAAACCCAAAGCCTAAAGAACAAGCAAACCAATAATTGTCGTGTATGGAGAAGGAAACTATATCTCAAATGGACAGGTTTGCTCCACGATATCAGTAGCCAAGTTATGACATGGAGGCAGTAGCGAAGCTTCATTTCTGAGTTAAAAGGCACAAACTAAATTTGATGAGAAAGCTGCTGTCGTAATTTTGACAACCAGAAGAAACAATGACATTACTTGATGTAATGATCTACTTTTGCATATTTTCAAAATGCAGCAATTTTGCAACACAGGGAGTGTTACCGGTCTATTGTAACATGTATGCGTTTACGTTCTTATTGTGTTCAGCTGTTTAATTTGATTTTTCAAGCTATGTTGGCCGTTATTTTTAATTAATCAATGCATTTTTTACTCTTGGAGATTCT

Coding sequences of Glyma.17g029600

Limit To All Plant Sequences

>Glyma.17g029600.1 sequence-type=CDS polypeptide=Glyma.17g029600.1.p locus=Glyma.17g029600 ID=Glyma.17g029600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGCGAAGAAGCATGACGCCGGAGACACCAAAAAGAGAAAGCGACTCAATACTGAAACTCACGAAGCTCCCAAGGCTTCGAAGCTCGTTGCCTCAAAGAAGCACAAACCAGACTCCGTTGCTAAAGACAACAAGAACAAGAAGACGGCTCCTCTTACCGGCCGAGAACGTCGTCTTCATTCCAAGGAACTAGCAGATGCTAGAAAAAAGAAGAGAAAGCGACATTTCACTCTTGAGCAAGAGCTTGCACGTCTATGGGAAAAGATGAGACGTCATGAGATTGCTAAAGAGGACAGAGCTAAGCTAGTGACTGAAGCTTTGCAAAAGATGAAGGGGAAGATTCCAGAGATTGCGGGCTCTCACATCTCATCTCGGATTCTTCAGACATGTGTCAAGCATTGTTCACAAGCTGAAAGAGATGCAGTATTTGAAGAGCTTCAGCCACATTTTCTAACTCTAGCATATAGTGCATATGCTGTTCACTTAGTGAAGAAGATGCTCGACAACGCTTCCAAGAAACAACTAGCAGGCTTTATCTCCACTCTCCATGGTCATGTTGCTCCTCTTCTTCGCCATATGGTTGGATCAGTTGTTGTTGAGCATGCTTATGAGTTAGCAAATGCTGCACAGAAGCAAGAACTGCTTTCGGAATTATACTCTACGGAACTTCGGTTGTTTAAGGATCTAGTCTCATTGAAAGAGAGCAGATTATTAGATGTGATGTCCAAGTTGGGTCTACAGAAAGGTTCAGTTCTGCGACATATGGCATCAGTGATTCAGCCAATTTTAGAGAAAGGGATAGTTGACCACTCTATTTTACACAGAGTCTTACTTGAATATTTTAGCATTGCTGATAAGTCATCTGTCACAGATATAATCCAACAGTTATCAAGTCCACTCATTGTTAGAATGATTGGTACGAGGGATGGAGCTAAAATTGGAATTCTTTGTGTAAAATATGGGAATGCCAAGGAAAGGAAGAAGATTATCAAAGGATTGAAGGGGCACATAGACAAAACAGCTTATCATCAATATGGGTGCATGGTGCTGGTTTGCATCCTTTCAGTTGTTGACGACACCAAACTGATAACAAAGGTTATCATTCGTGAGCTTCAGTCAATTTTAAAGGAGCTTGTTCTAGATAAGAATGGAAGGCGTCCCTTACTCCAATTACTACATCCTAATAGTTCACGTTATTTCAGTCCTGATGATCTTGCTTCTCTGAATTTATCTATACCTTCTCTGTCTCTCAAGGATCAGTCAGAAGCAAGCTCTCTGACAGAAACTTCGAAGGTTTCACTTGGTGACAAGGAATCCAAGGATGACATAGAGTTGGCATTGAACGAAGTTAATAAAGATAAAACTTCTGTGGATGATTCTGACTTAGCTGAGAGTGGGAAAAAAGACCCATTTGTCAGAAGGCAGGAGCTGTTGATCAAGAGTGGGCTTGCAGATAGTCTTCTTGATATATGTATTGAGAGCGTGGGAGAACTGATTCAGTCAAATTTTGGCAAAGAGGTCTTATATGAGGTTGCAACAGGGGGTTCTGAGGGCATAATGCACCCAGCTTTAGGTGATAAGATAAATTCCCTCCACAATGCAGTAGCTTCTCTTGCAGCAATGCCTAAATCAGAAGATTCACAAGAGGAGCATGTCCTTGAAAATTTCCATTCAAGTCGCACCATTAGAAAACTGATTTTGGATTGCCCCAACTTTGCTTCCACCTTATGGGAAAAAGCTTTAAAAGGGAAAAGTGAGTTATGGGTGCATGGCCACAGCTGTAAGGTTATTTCTGCATTTTTGGAATCACCAGACCCGACTGTACAAAAACTTGTTAAAAAAGAGCTACAGCCTTTAATTGACAATGGAATTCTCAAAAACCCAAAGCCTAAAGAACAAGCAAACCAATAA

>Glyma.17g029600.2 sequence-type=CDS polypeptide=Glyma.17g029600.2.p locus=Glyma.17g029600 ID=Glyma.17g029600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGCGAAGAAGCATGACGCCGGAGACACCAAAAAGAGAAAGCGACTCAATACTGAAACTCACGAAGCTCCCAAGGCTTCGAAGCTCGTTGCCTCAAAGAAGCACAAACCAGACTCCGTTGCTAAAGACAACAAGAACAAGAAGACGGCTCCTCTTACCGGCCGAGAACGTCGTCTTCATTCCAAGGAACTAGCAGATGCTAGAAAAAAGAAGAGAAAGCGACATTTCACTCTTGAGCAAGAGCTTGCACGTCTATGGGAAAAGATGAGACGTCATGAGATTGCTAAAGAGGACAGAGCTAAGCTAGTGACTGAAGCTTTGCAAAAGATGAAGGGGAAGATTCCAGAGATTGCGGGCTCTCACATCTCATCTCGGATTCTTCAGACATGTGTCAAGCATTGTTCACAAGCTGAAAGAGATGCAGTATTTGAAGAGCTTCAGCCACATTTTCTAACTCTAGCATATAGTGCATATGCTGTTCACTTAGTGAAGAAGATGCTCGACAACGCTTCCAAGAAACAACTAGCAGGCTTTATCTCCACTCTCCATGGTCATGTTGCTCCTCTTCTTCGCCATATGGTTGGATCAGTTGTTGTTGAGCATGCTTATGAGTTAGCAAATGCTGCACAGAAGCAAGAACTGCTTTCGGAATTATACTCTACGGAACTTCGGTTGTTTAAGGATCTAGTCTCATTGAAAGAGAGCAGATTATTAGATGTGATGTCCAAGTTGGGTCTACAGAAAGGTTCAGTTCTGCGACATATGGCATCAGTGATTCAGCCAATTTTAGAGAAAGGGATAGTTGACCACTCTATTTTACACAGAGTCTTACTTGAATATTTTAGCATTGCTGATAAGTCATCTGTCACAGATATAATCCAACAGTTATCAAGTCCACTCATTGTTAGAATGATTGGTACGAGGGATGGAGCTAAAATTGGAATTCTTTGTGTAAAATATGGGAATGCCAAGGAAAGGAAGAAGATTATCAAAGGATTGAAGGGGCACATAGACAAAACAGCTTATCATCAATATGGGTGCATGGTGCTGGTTTGCATCCTTTCAGTTGTTGACGACACCAAACTGATAACAAAGGTTATCATTCGTGAGCTTCAGTCAATTTTAAAGGAGCTTGTTCTAGATAAGAATGGAAGGCGTCCCTTACTCCAATTACTACATCCTAATAGTTCACGTTATTTCAGTCCTGATGATCTTGCTTCTCTGAATTTATCTATACCTTCTCTGTCTCTCAAGGATCAGTCAGAAGCAAGCTCTCTGACAGAAACTTCGAAGGTTTCACTTGGTGACAAGGAATCCAAGGATGACATAGAGTTGGCATTGAACGAAGTTAATAAAGATAAAACTTCTGTGGATGATTCTGACTTAGCTGAGAGTGGGAAAAAAGACCCATTTGTCAGAAGGCAGGAGCTGTTGATCAAGAGTGGGCTTGCAGATAGTCTTCTTGATATATGTATTGAGAGCGTGGGAGAACTGATTCAGTCAAATTTTGGCAAAGAGGTCTTATATGAGGTAATAAAGATGATATTGATATTATAA

Predicted protein sequences of Glyma.17g029600

Limit To All Plant Sequences

>Glyma.17g029600.1.p sequence-type=predicted peptide transcript=Glyma.17g029600.1 locus=Glyma.17g029600 ID=Glyma.17g029600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAKKHDAGDTKKRKRLNTETHEAPKASKLVASKKHKPDSVAKDNKNKKTAPLTGRERRLHSKELADARKKKRKRHFTLEQELARLWEKMRRHEIAKEDRAKLVTEALQKMKGKIPEIAGSHISSRILQTCVKHCSQAERDAVFEELQPHFLTLAYSAYAVHLVKKMLDNASKKQLAGFISTLHGHVAPLLRHMVGSVVVEHAYELANAAQKQELLSELYSTELRLFKDLVSLKESRLLDVMSKLGLQKGSVLRHMASVIQPILEKGIVDHSILHRVLLEYFSIADKSSVTDIIQQLSSPLIVRMIGTRDGAKIGILCVKYGNAKERKKIIKGLKGHIDKTAYHQYGCMVLVCILSVVDDTKLITKVIIRELQSILKELVLDKNGRRPLLQLLHPNSSRYFSPDDLASLNLSIPSLSLKDQSEASSLTETSKVSLGDKESKDDIELALNEVNKDKTSVDDSDLAESGKKDPFVRRQELLIKSGLADSLLDICIESVGELIQSNFGKEVLYEVATGGSEGIMHPALGDKINSLHNAVASLAAMPKSEDSQEEHVLENFHSSRTIRKLILDCPNFASTLWEKALKGKSELWVHGHSCKVISAFLESPDPTVQKLVKKELQPLIDNGILKNPKPKEQANQ*

>Glyma.17g029600.2.p sequence-type=predicted peptide transcript=Glyma.17g029600.2 locus=Glyma.17g029600 ID=Glyma.17g029600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAKKHDAGDTKKRKRLNTETHEAPKASKLVASKKHKPDSVAKDNKNKKTAPLTGRERRLHSKELADARKKKRKRHFTLEQELARLWEKMRRHEIAKEDRAKLVTEALQKMKGKIPEIAGSHISSRILQTCVKHCSQAERDAVFEELQPHFLTLAYSAYAVHLVKKMLDNASKKQLAGFISTLHGHVAPLLRHMVGSVVVEHAYELANAAQKQELLSELYSTELRLFKDLVSLKESRLLDVMSKLGLQKGSVLRHMASVIQPILEKGIVDHSILHRVLLEYFSIADKSSVTDIIQQLSSPLIVRMIGTRDGAKIGILCVKYGNAKERKKIIKGLKGHIDKTAYHQYGCMVLVCILSVVDDTKLITKVIIRELQSILKELVLDKNGRRPLLQLLHPNSSRYFSPDDLASLNLSIPSLSLKDQSEASSLTETSKVSLGDKESKDDIELALNEVNKDKTSVDDSDLAESGKKDPFVRRQELLIKSGLADSLLDICIESVGELIQSNFGKEVLYEVIKMILIL*

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