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Report for Sequence Feature Glyma.17g028300

Feature Type:gene_model
Chromosome:Gm17
Start:2104726
stop:2112810
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g028300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G11710.1AT lysyl-tRNA synthetase 1 JGI N/AIEA
GO:0006418GO-bp tRNA aminoacylation for protein translation EnsemblGenomesN/AIEA
GO:0006418GO-bp tRNA aminoacylation for protein translation JGI N/AIEA
GO:0006430GO-bp lysyl-tRNA aminoacylation EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding JGI N/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0004812GO-mf aminoacyl-tRNA ligase activity EnsemblGenomesN/AIEA
GO:0004812GO-mf aminoacyl-tRNA ligase activity JGI N/AIEA
GO:0004824GO-mf lysine-tRNA ligase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
KOG1885 KOG Lysyl-tRNA synthetase (class II) JGI N/AIEA
PTHR22594Panther ASPARTYL/LYSYL-TRNA SYNTHETASE JGI N/AIEA
PTHR22594:SF4Panther LYSINE--TRNA LIGASE JGI N/AIEA
PF00152PFAM tRNA synthetases class II (D, K and N) JGI N/AIEA
PF01336PFAM OB-fold nucleic acid binding domain JGI N/AIEA

Expression Patterns of Glyma.17g028300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g028300
ParalogEvidenceComments
Glyma.07g245700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g028300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g03140 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.17g028300
>Glyma.17g028300.2 sequence-type=transcript locus=Glyma.17g028300 ID=Glyma.17g028300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGATGTTTTGGGTGCATGTTCACCCAAGACTTTCTCCTGTAAACCGTTACCCTAAACCTTTCCAAAGTCTTGTAAGCCATTACTCACCCTAACGTTTTGCTCCGTTCGTAAGAACACTTCGACTTTGCCCTtcgcctcgcctcgcctcgcctcgcctcCGATTTCCTTCTTTCTCCACCAATGGAAGTTCCTTCGGAGGTACCATCTACTGACACTGGCACCAGCACCGGCACCGGCGAAACCATGAGCAAGAATGCGTTGAAGCGGGAGCTGAAGAACAAACAGAGAGAAGAAGAAAGGAAGCGCAAGGATGAGGAGAAGGCCAAAAAGGCAGCTGAAGCACAACAGGCAAAGGATAACAAATCTGCACCAGCTGATGATGAGGATATGGATCCAACTCAATACCTTGAGAACAGGCTAAAGTATCTTGCAGTTCAAAAGACAGAAGGGAAGAACCCGTATCCTCATAAATTCTTTGTCACTATGTCTATTGATCAATACATCAAGGAATATGGAGGTTTAAGCAACGGGCAACACATTGAGGATGTCTCTGTGTCTTTGGCTGGCCGGATCATGCACAAACGCACCTCTGGTTCTAAGCTTGTCTTTTATGACCTGCACGGTGGTGGTTGCAAGGTCCAGGTTATGGCTGATGCTAGTAAATCAGACTTGGATGAGGCTGGATTTTCCAAATTCCATTCTAATGTGAAGCGCGGTGACATAGTTGGTGTCACTGGGTTCCCAGGCAAAAGTAAGAAGGGCGAACTTAGTATTTTTCCCAAGAATTTTGTGTCGCTGTCTCATTGTTTGCACATGATGCCAAGGCAAAAGTCTGCTGCTGCTGCTATTGATAATAGAAATCCATGGATACCGGGAAGTACTAGGAATCCTGAAACATATATTTTGAAGGATCAGGAAACTAGATATCGGTTACGCCATTTGGATTTGATGCTTAATCCAGAGGTTCGAGACATATTCAAGACCAGGTCTAAAATCATTTCTTACATTAGGAGGTTCCTTGATGACCTTGATTTCTTGGAGGTTGAAACACCTATGATGAATATGATTGCTGGTGGAGCTGCAGCCCGTCCATTTGTAACACATCACAATGATCTTAACATGAGGTTATTCATGAGGATTGCTCCAGAACTGTATCTTAAGGAGTTGGTTGTTGGTGGACTGGATCGTGTTTATGAAATTGGTAAACAATTTAGGAATGAGGGCATAGATTTGACTCATAATCCTGAGTTTACTACCTGTGAGTTCTATATGGCTTATAAGGACTACAATGACTTAATGGATCTAACAGAGCAAATGTTGAGTGGTATGGTTAAGGAGCTTACGAAAGGCAGCTATAAAATCAAGTATCATGCAGATGGGATTGATAAGGAACCTATTGAAATTGACTTTACTACACCTTTTAGAAGGATTGACATGATTGAAGAGTTAGAGAAGATGGCAGGTCTAAGTATTCCCAAAGACTTGTCAAGTGAGGAAGCCAATCAATATTTGAAGGATGCATGCGTGAAGTATGAGATCAAATGTCCTCCCCCTGAGACAACTGCTCGTTTGTTGGATAAACTTGTGGGTCACTTTTTGGAAGAAACGTGTGTAAATCCTACATTCATCAAAAACCATCCTGAGATCATGAGTCCTCTAGCAAAGTGGCACAGATCAAAACCAGGCCTGACTGAACGTTTTGAATTGTTTGTTAATAAACGTGAACTTTGCAATGCATATACTGAATTGAATGACCCTGTAGTACAACGACAGAGATTTGCTGAACAACTCAAGGATCGGCAATCTGGCGATGATGAAGCAATGGCCTTAGATGAAACATTTTGTACGGCTCTAGAATATGGTTTACCACCTACTGGTGGTTGGGGTTTGGGCATTGATCGGTTGACCATGTTACTGACTGATTCACAGAATATTAAGGAGGTTCTTCTCTTCCCTGCCATGAAACCTCAAGACTGAGTCAACCAAAACTGTTTGAATCTCAGAGAAGTAAAATCATCATACACAGGAACATGAAAAATGCAAGATGATTAATAGGGGATCTCAGTTTTGATTAGTAGACTTGGCATCGACTGGTCATGCATCGATCACACTTGGTGGTTGGATTGAATGTGATGTCATATACCAGCTTATTTATTACATATTTGAGATTTGAGACAATAGTTTAACGAATAGATTTCTCATCAACAAGCTCATATTGCTATTGTTCAATGTAGAGGTGGGTGTATGGGTTAGCTTGCCTTGCACCGCTACGTACAAGTCCGCGTGTGTGTGACGGAATATGGTTTTTGTTTAGTGATTTAGGAGCCATTTAATTGTAGTTAGACTAGAGATCGAA
Coding sequences of Glyma.17g028300
>Glyma.17g028300.1 sequence-type=CDS polypeptide=Glyma.17g028300.1.p locus=Glyma.17g028300 ID=Glyma.17g028300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGTTCCTTCGGAGGTACCATCTACTGACACTGGCACCAGCACCGGCACCGGCGAAACCATGAGCAAGAATGCGTTGAAGCGGGAGCTGAAGAACAAACAGAGAGAAGAAGAAAGGAAGCGCAAGGATGAGGAGAAGGCCAAAAAGGCAGCTGAAGCACAACAGGCAAAGGATAACAAATCTGCACCAGCTGATGATGAGGATATGGATCCAACTCAATACCTTGAGAACAGGCTAAAGTATCTTGCAGTTCAAAAGACAGAAGGGAAGAACCCGTATCCTCATAAATTCTTTGTCACTATGTCTATTGATCAATACATCAAGGAATATGGAGGTTTAAGCAACGGGCAACACATTGAGGATGTCTCTGTGTCTTTGGCTGGCCGGATCATGCACAAACGCACCTCTGGTTCTAAGCTTGTCTTTTATGACCTGCACGGTGGTGGTTGCAAGGTCCAGGTTATGGCTGATGCTAGTAAATCAGACTTGGATGAGGCTGGATTTTCCAAATTCCATTCTAATGTGAAGCGCGGTGACATAGTTGGTGTCACTGGGTTCCCAGGCAAAAGTAAGAAGGGCGAACTTAGTATTTTTCCCAAGAATTTTGTGTCGCTGTCTCATTGTTTGCACATGATGCCAAGGCAAAAGTCTGCTGCTGCTGCTATTGATAATGTAAATTTGAAGAGAAATCCATGGATACCGGGAAGTACTAGGAATCCTGAAACATATATTTTGAAGGATCAGGAAACTAGATATCGGTTACGCCATTTGGATTTGATGCTTAATCCAGAGGTTCGAGACATATTCAAGACCAGGTCTAAAATCATTTCTTACATTAGGAGGTTCCTTGATGACCTTGATTTCTTGGAGGTTGAAACACCTATGATGAATATGATTGCTGGTGGAGCTGCAGCCCGTCCATTTGTAACACATCACAATGATCTTAACATGAGGTTATTCATGAGGATTGCTCCAGAACTGTATCTTAAGGAGTTGGTTGTTGGTGGACTGGATCGTGTTTATGAAATTGGTAAACAATTTAGGAATGAGGGCATAGATTTGACTCATAATCCTGAGTTTACTACCTGTGAGTTCTATATGGCTTATAAGGACTACAATGACTTAATGGATCTAACAGAGCAAATGTTGAGTGGTATGGTTAAGGAGCTTACGAAAGGCAGCTATAAAATCAAGTATCATGCAGATGGGATTGATAAGGAACCTATTGAAATTGACTTTACTACACCTTTTAGAAGGATTGACATGATTGAAGAGTTAGAGAAGATGGCAGGTCTAAGTATTCCCAAAGACTTGTCAAGTGAGGAAGCCAATCAATATTTGAAGGATGCATGCGTGAAGTATGAGATCAAATGTCCTCCCCCTGAGACAACTGCTCGTTTGTTGGATAAACTTGTGGGTCACTTTTTGGAAGAAACGTGTGTAAATCCTACATTCATCAAAAACCATCCTGAGATCATGAGTCCTCTAGCAAAGTGGCACAGATCAAAACCAGGCCTGACTGAACGTTTTGAATTGTTTGTTAATAAACGTGAACTTTGCAATGCATATACTGAATTGAATGACCCTGTAGTACAACGACAGAGATTTGCTGAACAACTCAAGGATCGGCAATCTGGCGATGATGAAGCAATGGCCTTAGATGAAACATTTTGTACGGCTCTAGAATATGGTTTACCACCTACTGGTGGTTGGGGTTTGGGCATTGATCGGTTGACCATGTTACTGACTGATTCACAGAATATTAAGGAGGTTCTTCTCTTCCCTGCCATGAAACCTCAAGACTGA

>Glyma.17g028300.2 sequence-type=CDS polypeptide=Glyma.17g028300.2.p locus=Glyma.17g028300 ID=Glyma.17g028300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGTTCCTTCGGAGGTACCATCTACTGACACTGGCACCAGCACCGGCACCGGCGAAACCATGAGCAAGAATGCGTTGAAGCGGGAGCTGAAGAACAAACAGAGAGAAGAAGAAAGGAAGCGCAAGGATGAGGAGAAGGCCAAAAAGGCAGCTGAAGCACAACAGGCAAAGGATAACAAATCTGCACCAGCTGATGATGAGGATATGGATCCAACTCAATACCTTGAGAACAGGCTAAAGTATCTTGCAGTTCAAAAGACAGAAGGGAAGAACCCGTATCCTCATAAATTCTTTGTCACTATGTCTATTGATCAATACATCAAGGAATATGGAGGTTTAAGCAACGGGCAACACATTGAGGATGTCTCTGTGTCTTTGGCTGGCCGGATCATGCACAAACGCACCTCTGGTTCTAAGCTTGTCTTTTATGACCTGCACGGTGGTGGTTGCAAGGTCCAGGTTATGGCTGATGCTAGTAAATCAGACTTGGATGAGGCTGGATTTTCCAAATTCCATTCTAATGTGAAGCGCGGTGACATAGTTGGTGTCACTGGGTTCCCAGGCAAAAGTAAGAAGGGCGAACTTAGTATTTTTCCCAAGAATTTTGTGTCGCTGTCTCATTGTTTGCACATGATGCCAAGGCAAAAGTCTGCTGCTGCTGCTATTGATAATAGAAATCCATGGATACCGGGAAGTACTAGGAATCCTGAAACATATATTTTGAAGGATCAGGAAACTAGATATCGGTTACGCCATTTGGATTTGATGCTTAATCCAGAGGTTCGAGACATATTCAAGACCAGGTCTAAAATCATTTCTTACATTAGGAGGTTCCTTGATGACCTTGATTTCTTGGAGGTTGAAACACCTATGATGAATATGATTGCTGGTGGAGCTGCAGCCCGTCCATTTGTAACACATCACAATGATCTTAACATGAGGTTATTCATGAGGATTGCTCCAGAACTGTATCTTAAGGAGTTGGTTGTTGGTGGACTGGATCGTGTTTATGAAATTGGTAAACAATTTAGGAATGAGGGCATAGATTTGACTCATAATCCTGAGTTTACTACCTGTGAGTTCTATATGGCTTATAAGGACTACAATGACTTAATGGATCTAACAGAGCAAATGTTGAGTGGTATGGTTAAGGAGCTTACGAAAGGCAGCTATAAAATCAAGTATCATGCAGATGGGATTGATAAGGAACCTATTGAAATTGACTTTACTACACCTTTTAGAAGGATTGACATGATTGAAGAGTTAGAGAAGATGGCAGGTCTAAGTATTCCCAAAGACTTGTCAAGTGAGGAAGCCAATCAATATTTGAAGGATGCATGCGTGAAGTATGAGATCAAATGTCCTCCCCCTGAGACAACTGCTCGTTTGTTGGATAAACTTGTGGGTCACTTTTTGGAAGAAACGTGTGTAAATCCTACATTCATCAAAAACCATCCTGAGATCATGAGTCCTCTAGCAAAGTGGCACAGATCAAAACCAGGCCTGACTGAACGTTTTGAATTGTTTGTTAATAAACGTGAACTTTGCAATGCATATACTGAATTGAATGACCCTGTAGTACAACGACAGAGATTTGCTGAACAACTCAAGGATCGGCAATCTGGCGATGATGAAGCAATGGCCTTAGATGAAACATTTTGTACGGCTCTAGAATATGGTTTACCACCTACTGGTGGTTGGGGTTTGGGCATTGATCGGTTGACCATGTTACTGACTGATTCACAGAATATTAAGGAGGTTCTTCTCTTCCCTGCCATGAAACCTCAAGACTGA
Predicted protein sequences of Glyma.17g028300
>Glyma.17g028300.1.p sequence-type=predicted peptide transcript=Glyma.17g028300.1 locus=Glyma.17g028300 ID=Glyma.17g028300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEVPSEVPSTDTGTSTGTGETMSKNALKRELKNKQREEERKRKDEEKAKKAAEAQQAKDNKSAPADDEDMDPTQYLENRLKYLAVQKTEGKNPYPHKFFVTMSIDQYIKEYGGLSNGQHIEDVSVSLAGRIMHKRTSGSKLVFYDLHGGGCKVQVMADASKSDLDEAGFSKFHSNVKRGDIVGVTGFPGKSKKGELSIFPKNFVSLSHCLHMMPRQKSAAAAIDNVNLKRNPWIPGSTRNPETYILKDQETRYRLRHLDLMLNPEVRDIFKTRSKIISYIRRFLDDLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMRLFMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYKDYNDLMDLTEQMLSGMVKELTKGSYKIKYHADGIDKEPIEIDFTTPFRRIDMIEELEKMAGLSIPKDLSSEEANQYLKDACVKYEIKCPPPETTARLLDKLVGHFLEETCVNPTFIKNHPEIMSPLAKWHRSKPGLTERFELFVNKRELCNAYTELNDPVVQRQRFAEQLKDRQSGDDEAMALDETFCTALEYGLPPTGGWGLGIDRLTMLLTDSQNIKEVLLFPAMKPQD*

>Glyma.17g028300.2.p sequence-type=predicted peptide transcript=Glyma.17g028300.2 locus=Glyma.17g028300 ID=Glyma.17g028300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEVPSEVPSTDTGTSTGTGETMSKNALKRELKNKQREEERKRKDEEKAKKAAEAQQAKDNKSAPADDEDMDPTQYLENRLKYLAVQKTEGKNPYPHKFFVTMSIDQYIKEYGGLSNGQHIEDVSVSLAGRIMHKRTSGSKLVFYDLHGGGCKVQVMADASKSDLDEAGFSKFHSNVKRGDIVGVTGFPGKSKKGELSIFPKNFVSLSHCLHMMPRQKSAAAAIDNRNPWIPGSTRNPETYILKDQETRYRLRHLDLMLNPEVRDIFKTRSKIISYIRRFLDDLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMRLFMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYKDYNDLMDLTEQMLSGMVKELTKGSYKIKYHADGIDKEPIEIDFTTPFRRIDMIEELEKMAGLSIPKDLSSEEANQYLKDACVKYEIKCPPPETTARLLDKLVGHFLEETCVNPTFIKNHPEIMSPLAKWHRSKPGLTERFELFVNKRELCNAYTELNDPVVQRQRFAEQLKDRQSGDDEAMALDETFCTALEYGLPPTGGWGLGIDRLTMLLTDSQNIKEVLLFPAMKPQD*






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