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Report for Sequence Feature Glyma.17g021400

Feature Type:gene_model
Chromosome:Gm17
Start:1566684
stop:1575389
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g021400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G18860.1AT inosine-uridine preferring nucleoside hydrolase family protein JGI N/AIEA
GO:0006152GO-bp purine nucleoside catabolic process EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0008477GO-mf purine nucleosidase activity EnsemblGenomesN/AIEA
KOG2938 KOG Predicted inosine-uridine preferring nucleoside hydrolase JGI N/AIEA
PTHR12304Panther INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE JGI N/AIEA
PF01156PFAM Inosine-uridine preferring nucleoside hydrolase JGI N/AIEA
P165-PWYSoyCyc9 superpathway of purines degradation in plants Plant Metabolic Network ISS
PWY-5043SoyCyc9 purine nucleosides salvage II (plant) Plant Metabolic Network ISS
PWY-5044SoyCyc9 purine nucleotides degradation I (plants) Plant Metabolic Network ISS
PWY-6596SoyCyc9 adenosine nucleotides degradation I Plant Metabolic Network ISS
PWY-6605SoyCyc9 adenine and adenosine salvage II Plant Metabolic Network ISS
GN7V-65871SoyCyc9-rxn adenosine nucleosidase Plant Metabolic Network ISS

Expression Patterns of Glyma.17g021400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g021400
ParalogEvidenceComments
Glyma.07g253000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g021400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g02440 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g021400
>Glyma.17g021400.1 sequence-type=CDS polypeptide=Glyma.17g021400.1.p locus=Glyma.17g021400 ID=Glyma.17g021400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGGTGTTGGGTAGCAGTAGCAGTTGCAGTAACAGCGTTGATTATTACAGGAGGAGGTAGAGGTTGTGCGCCTCATCGGATTCTTGTGGATACAGATGTTGACACTGACGATTTCTTTGCTCTTCTCTACCTCTTGAAGCTCAACACTTCACAATTTCAATTGGAGGGCATCAGCATCAGTGCAAATGCTTGGACGAGTGCTGGTCATGCTGTTAATCAAATATATGATCTACTTTACATGATGGGTCGAGATGACGTTGCCGTTGGAGTTGGAGGCGAGGGTGGAATACTACAAAATGGTACTATACTCCCTAACGTCGGTGGATATCTTCCAATAATAGAACAGGGAATGACAACAGTAGGTGGTTGCAGATACAGGCGGGCCATTCCTGTTGGTCTTGGAGGGCGCTTAGACATCGATGCCAATTATGGCATCAGGAAAGCTTTCCTACCACAGGGAACTAGGAAATACACTCCACTACAGCAGCCAACTGCACAGGAAGTGTTGATTGAAAAAATATCTGCAGGTCCAATAACTCTGCTTGTGATTGGAGCGCATACAAACATTGCAATTTTCCTAATGAATAATCCACACCTAAAGAAAAATGTGGAACATATTTATATAATGGGCGGCGGTGTAAGATCAAGCAACCCAACAGGTTGTTGCCCCAAAAATGCTTCATCTACCTGCGTGCCAAGGCAGTGTGGTGAGCGTGGCAATATGTTCACAGATTATAATACTAACCCTTATGCAGAATTTAATATATTTGGAGACCCTTTTGCAGCATACCAGGTGATCCATTCTGGAATTCCTATCACCCTTGTTCCTCTTGATGCAACAAACACAATCCCCATCAACGAACAATTCTTTGATGCATTTGAAAAGAGTCAAGACACATATGAGGCACAGTACATTTTCAAATCCTTGAAAATGGCCCGTGATACTTGGTTTGACAACGAATTCTATTCGAGTTATTTTATGTGGGACTCTTTCGCAGCTGGTATAGCCGTCTCAATCATGAGTAAGCCCAACAACCAAAAAGGTGAAAATGAATTTGCAGAAATGGAATATATGAACATAACTGTAATCACTTCAAACAAACCATATGGGGTATCTGATGGCTCCAACCCTTTCTTTGATGGCCGAAGAGTTCCTAAATTCAATCTAGAAAAAGGTGGGGTGCATAGTGGCCATGTTCAACAAGGACTTAGAGATCCACTTTGCTTTGTGAATAATGGGAAAGGGAAATGTCAGGATGGTTACACAGCAGAGGTGAGTGGTCCAGACTCAGTGAGGGTACTTGTTGCCACAAAAGCAAAGCCTAACAAGGATGTTGGGAGCTCACTTGACAGAGAATATTTCATAAGCTTCTTGAATGTTCTGAAGCATCCACAAAATACTGGGAGGTTCAACTTCACCACACAGTTTCCTTACTACAAAGAAGTAACTTACAAGCCAGATTTTGAAAATAAAACACCGGGGAAACCTGTTGTGTTTGATATGGACATGAGTGCAGGCGATTTTCTGGCTCTATTTTACCTCCTAAAAGTGCCTGTTCAAGTAATCGACCTTAAGGCAATCATTGTGAGCCCTACTGGATGGACTAATTCAGCAACAATAGATGTCATCTATGACTTACTACACATGATGGGTCGTGACGATATCCCAGTTGGTCTAGGAGATGTTTTTGCAATGAACCAGTCAGATCCAATATTCCCACCTGTTGGAGAATGCAAGTATGTAAAAGCCATTCCCCATGGAAGTGGGGGGTTACTGGACTCTGACACTCTTTATGGTCTTGCTCGTGATCTACCGCGCAGTCCAAGAAGGTATACAGCAGAGAACTCTGTGAAGTTTGGGGCTCCTCGGGATACAGATCACCCTGAGCTCAGACAACCATTAGCCATGGAAGTTTGGAACTCTGTATTGCAAAGAACTAAACCAAGGTCTAAGATTACAGTATTGACTAATGGACCCTTGACTAATCTGGCAAAGGTTGTATCGGTGAAAAACATACGCTCAAGAATTCAGGAGGTATATGTAGTGGGGGGACACATAAGCAGCAATGTCAATGACAAAGGAGATATCTTTTCAGTTCCTTCGAACCAATATGCAGAATTCAATATGTTCCTGGATCCTTTAGCAGCCAAGATAGTGTTTGAATCAGAAGTTAACATCACACTCATCCCACTCAACACACAGCGCAGAGTAAGATCATTTTCAACCATTATAGGCGAGTTGCGTAGAACACCAAGAACACCCGAGGCTGTATTTTCTGAGCGTCTGCTGTCAAGGCTATACCGTTTAAAGCAAACCCATAACAGATATCAGCATATGGACACATTCTTGGGGGAAATTCTAGGCGCAGTTGTCTTGGCTGAGAGCCATTCAGGTCTTAATCCAAAATTTGAGGCGAAGGCAGTTAAAGTTTTGGCTGATGGCAATGAATCAAGTGATGGAAAAACTGTGGTAGATGAGAAAGGTGGAAAACTAATGAGAATTTTAAGCAGTGTGGATGCAAAGGCTTATCATAGTTTGTATGCAAAAAAGCTTGGCGATGAGAACCAATCAGCTAAGATAGGCAGCTTTGAGGAACAGCGGAGAAAATGGAGTCATCCTCACATTATAAATTAG
Predicted protein sequences of Glyma.17g021400
>Glyma.17g021400.1.p sequence-type=predicted peptide transcript=Glyma.17g021400.1 locus=Glyma.17g021400 ID=Glyma.17g021400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRCWVAVAVAVTALIITGGGRGCAPHRILVDTDVDTDDFFALLYLLKLNTSQFQLEGISISANAWTSAGHAVNQIYDLLYMMGRDDVAVGVGGEGGILQNGTILPNVGGYLPIIEQGMTTVGGCRYRRAIPVGLGGRLDIDANYGIRKAFLPQGTRKYTPLQQPTAQEVLIEKISAGPITLLVIGAHTNIAIFLMNNPHLKKNVEHIYIMGGGVRSSNPTGCCPKNASSTCVPRQCGERGNMFTDYNTNPYAEFNIFGDPFAAYQVIHSGIPITLVPLDATNTIPINEQFFDAFEKSQDTYEAQYIFKSLKMARDTWFDNEFYSSYFMWDSFAAGIAVSIMSKPNNQKGENEFAEMEYMNITVITSNKPYGVSDGSNPFFDGRRVPKFNLEKGGVHSGHVQQGLRDPLCFVNNGKGKCQDGYTAEVSGPDSVRVLVATKAKPNKDVGSSLDREYFISFLNVLKHPQNTGRFNFTTQFPYYKEVTYKPDFENKTPGKPVVFDMDMSAGDFLALFYLLKVPVQVIDLKAIIVSPTGWTNSATIDVIYDLLHMMGRDDIPVGLGDVFAMNQSDPIFPPVGECKYVKAIPHGSGGLLDSDTLYGLARDLPRSPRRYTAENSVKFGAPRDTDHPELRQPLAMEVWNSVLQRTKPRSKITVLTNGPLTNLAKVVSVKNIRSRIQEVYVVGGHISSNVNDKGDIFSVPSNQYAEFNMFLDPLAAKIVFESEVNITLIPLNTQRRVRSFSTIIGELRRTPRTPEAVFSERLLSRLYRLKQTHNRYQHMDTFLGEILGAVVLAESHSGLNPKFEAKAVKVLADGNESSDGKTVVDEKGGKLMRILSSVDAKAYHSLYAKKLGDENQSAKIGSFEEQRRKWSHPHIIN*






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