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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G15530.5 | AT | pyruvate orthophosphate dikinase | JGI | N/A | IEA |
| GO:0006090 | GO-bp | pyruvate metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0016310 | GO-bp | phosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0016310 | GO-bp | phosphorylation | JGI | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0016301 | GO-mf | kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0016301 | GO-mf | kinase activity | JGI | N/A | IEA |
| GO:0016772 | GO-mf | transferase activity, transferring phosphorus-containing groups | EnsemblGenomes | N/A | IEA |
| GO:0016772 | GO-mf | transferase activity, transferring phosphorus-containing groups | JGI | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0050242 | GO-mf | pyruvate, phosphate dikinase activity | EnsemblGenomes | N/A | IEA |
| PTHR22931 | Panther | PHOSPHOENOLPYRUVATE DIKINASE-RELATED | JGI | N/A | IEA |
| PTHR22931:SF9 | Panther | PYRUVATE, PHOSPHATE DIKINASE 1, CHLOROPLASTIC | JGI | N/A | IEA |
| PF00391 | PFAM | PEP-utilising enzyme, mobile domain | JGI | N/A | IEA |
| PF01326 | PFAM | Pyruvate phosphate dikinase, PEP/pyruvate binding domain | JGI | N/A | IEA |
| PF02896 | PFAM | PEP-utilising enzyme, TIM barrel domain | JGI | N/A | IEA |
| PWY-6549 | SoyCyc9 | L-glutamine biosynthesis III | Plant Metabolic Network | ISS | |
| GN7V-40995 | SoyCyc9-rxn | pyruvate, phosphate dikinase | Plant Metabolic Network | ISS |
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Glyma.17g020600 not represented in the dataset |
Glyma.17g020600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.07g253700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma17g02371 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g020600.1 sequence-type=CDS polypeptide=Glyma.17g020600.1.p locus=Glyma.17g020600 ID=Glyma.17g020600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCTTCCATAGTGAAAGGCATATTCATAAGGAGCACAGCGGATGTGTGCAAGAATAGCATGGTTTTGAAGAAGCAGAGCGAAATTGTAGGGAGGAGAAGCACAAGAGTGCAGTGGCAGTTGCATCTTAGATCAAAATCAAACACATGGAAGAGAGGTAGTAGGAGATCATATCAGCCTCCAATACGTGGCCAGGCCATCCTTACCCCAGCAACACCACCAACCACCAAAAAGCGGGTATTCACTTTTGGCAAAGGTAGAAGTGAAGGAAACAAGGCCATGAAGTCCTTGTTGGGAGGAAAGGGAGCCAACCTTGCAGAAATGGCAACCATTGGCTTATCTGTGCCTCCTGGACTCACTATATCAACAGAAGCATGCCAAGAGTATCAACAAAATGGAAAGAAGCTACCAGATGGCTTGTGGGAGGAGGTACTTGAAGGCTTGCAATTTGTAGAGAATGAAATGGGAGCCATTCTTGGGAATCCTTTAAAACCTCTTCTCCTCTCTGTGCGCTCTGGTGCTGCGATTTCCATGCCTGGGATGATGGACACAGTTCTCAACTTAGGATTGAATGATGAAGTGGTTGCTGGGTTGGCAGCAAAAAGTGGAGAGCGGTTTGCTTATGATTCTTATAGACGTTTCTTAGACATGTTTGGAGATGTTGTTATGGACATTCCACACTCGTTATTTGAGGAGAAGTTAGAAAAGCTAAAGCATACAAAAGGTGTTAAACTTGACACTGATCTAACAACTTATGATCTCAAAGATCTAGTTGAGCAGTACAAGAATGTCTACCTTGAAGCCAGAGGAGAAAAGTTTCCCTCAGATCCAAAGAAGCAGTTAGAACTGGCTGTTAAAGCTGTTTTTAATTCTTGGGATAGCCCAAGGGCTATTAAGTATCGGAGCATTAATCAAATAACTGGGCTAAAGGGAACTGCTGTAAACATTCAGTCCATGGTGTTTGGTAACATGGGGAACACTTCCGGAACTGGCGTCCTTTTCACTAGAAATCCAAGCACTGGTGAAAACAAACTTTATGGCGAATTTCTAATTAATGCTCAGGGAGAGGATGTAGTTGCTGGAATCAGGACACCTGAAGATTTGGAGGTCATGAAATCTTGCATGCCAGATGCTTATAAGGAACTTGAGGGGAACTGTGAAATTCTAGAGAAACATTACAAGGATATGATGGATATCGAATTCACTGTCCAAGAAAATAGGTTGTGGATGTTGCAATGTCGAAGCGGAAAACGTACTGGTAAAGGTGCATTCAAAATAGCTGTAGATATGGTTAATGAGGGGCTTGTTGATATTCGTTCTGCAATCAAGATGGTAGAGCCACAGCATCTTGATCAACTTCTCCACCCACAGTTTGAGGATCCATCTACTTACAAGGATAAAGTGATCGCCGTTGGTTTGCCTGCATCCCCTGGAGCCGCAGTAGGGCAGGTTGTATTCACTGCTGATGATGCTGAAGAATGGCATGCACAAGGAAAGAGTGTCATCTTGGTGAGGAATGAGACTAGTCCAGAGGATGTTGGGGGTATGCATGCAGCTACTGGAATCTTGACAGCTAGAGGTGGTATGACATCTCATGCTGCTGTTGTAGCCCGTGGATGGGGAAAGTGTTGTGTGTCTGGTTGCTCTGACATCCTTGTAAATGATGCTGAGAAGGTGTTTGTAGTTGGGGATAAGGTGATAGGAGAAGGAGAATGGATCTCACTGAATGGATCTACAGGTGAGGTGATACTGGGAAAGCAGCCACTTTCTCCTCCGGCTCTAAGTGATGATTTGGAAATTTTCATGTCTTGGGCTGATGAAATAAGGCATCTGAAGGTTATGGCGAATGCTGACACACCTGAAGATGCAGTAACAGCTAGACAAAATGGTGCCCAAGGAATTGGACTTTGCAGGACAGAACATATGTTTTTTGCTTCAGACGAGAGGATAAAGGCTGTGAGAATGATGATAATGGCAGTTACACCGGAGCAGAGAAAAGCTGCACTGGACCTGTTGCTACCTTATCAAAGATCAGATTTTGAGGGGATCTTTCGTGCAATGGATGGTCTGCCAGTAACAATCCGATTGTTAGATCCTCCACTTCATGAATTTCTTCCAGAGGGTGACCTTGAACACATTGTCAGGGAACTAACTTCTGACACAGGAATGAAAGAAGAAGAAATCTTCTCAAGGATAGAAAAACTATCAGAAGTGAATCCCATGCTTGGTTTTCGTGGCTGCAGGTTGGGAATATCATACCCAGAACTGACTGAGATGCAGGCCCGTGCAATCTTTCAGGCTGCTGTTTCAGTGAGTAACCATGGCATTACAGTTCATCCAGAGATAATGGTTCCACTTATCGGTACACCTCAGGAATTAAGGCATCAAGTGAATTTAATAAGGAATGTTGCTGATAAAGTGTTGTCTGAGATGGGTTCTTCTTTAAGCTATAAGGTTGGAACTATGATTGAAGTTCCAAGGGCTGCACTAGTTGCAGATGAGATTGCAAAGGAAGCAGAGTTCTTTTCGTTTGGAACCAATGACCTTACTCAAATGACGTTTGGATATAGTAGAGATGATGTTGGCAAATTTCTTCCTATATACCTATCTGGTGGGATTCTGCAGCATGATCCATTCGAGGTACTTGACCAAAAAGGTGTGGGTCAACTCATCAAGATATGCACAGAAAAGGGTCGTGCTGCTAGGCCAAACTTAAAGGTTGGAATATGCGGAGAGCATGGCGGGGAGCCTTCTTCGGTTGCATTTTTTGCTGAAATTGGACTTGACTATGTTTCATGTTCTCCTTTTAGGGTTCCAATAGCTAGGCTTGCAGCAGCTCAAGTTGCAGTTTAA
>Glyma.17g020600.1.p sequence-type=predicted peptide transcript=Glyma.17g020600.1 locus=Glyma.17g020600 ID=Glyma.17g020600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSSIVKGIFIRSTADVCKNSMVLKKQSEIVGRRSTRVQWQLHLRSKSNTWKRGSRRSYQPPIRGQAILTPATPPTTKKRVFTFGKGRSEGNKAMKSLLGGKGANLAEMATIGLSVPPGLTISTEACQEYQQNGKKLPDGLWEEVLEGLQFVENEMGAILGNPLKPLLLSVRSGAAISMPGMMDTVLNLGLNDEVVAGLAAKSGERFAYDSYRRFLDMFGDVVMDIPHSLFEEKLEKLKHTKGVKLDTDLTTYDLKDLVEQYKNVYLEARGEKFPSDPKKQLELAVKAVFNSWDSPRAIKYRSINQITGLKGTAVNIQSMVFGNMGNTSGTGVLFTRNPSTGENKLYGEFLINAQGEDVVAGIRTPEDLEVMKSCMPDAYKELEGNCEILEKHYKDMMDIEFTVQENRLWMLQCRSGKRTGKGAFKIAVDMVNEGLVDIRSAIKMVEPQHLDQLLHPQFEDPSTYKDKVIAVGLPASPGAAVGQVVFTADDAEEWHAQGKSVILVRNETSPEDVGGMHAATGILTARGGMTSHAAVVARGWGKCCVSGCSDILVNDAEKVFVVGDKVIGEGEWISLNGSTGEVILGKQPLSPPALSDDLEIFMSWADEIRHLKVMANADTPEDAVTARQNGAQGIGLCRTEHMFFASDERIKAVRMMIMAVTPEQRKAALDLLLPYQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEHIVRELTSDTGMKEEEIFSRIEKLSEVNPMLGFRGCRLGISYPELTEMQARAIFQAAVSVSNHGITVHPEIMVPLIGTPQELRHQVNLIRNVADKVLSEMGSSLSYKVGTMIEVPRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPIYLSGGILQHDPFEVLDQKGVGQLIKICTEKGRAARPNLKVGICGEHGGEPSSVAFFAEIGLDYVSCSPFRVPIARLAAAQVAV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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