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Report for Sequence Feature Glyma.17g019300

Feature Type:gene_model
Chromosome:Gm17
Start:1447243
stop:1450323
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g019300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G31710.1AT Copper amine oxidase family protein JGI N/AIEA
GO:0009308GO-bp amine metabolic process EnsemblGenomesN/AIEA
GO:0009308GO-bp amine metabolic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0005507GO-mf copper ion binding EnsemblGenomesN/AIEA
GO:0005507GO-mf copper ion binding JGI N/AIEA
GO:0008131GO-mf primary amine oxidase activity EnsemblGenomesN/AIEA
GO:0008131GO-mf primary amine oxidase activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0048038GO-mf quinone binding EnsemblGenomesN/AIEA
GO:0048038GO-mf quinone binding JGI N/AIEA
KOG1186 KOG Copper amine oxidase JGI N/AIEA
PTHR10638Panther COPPER AMINE OXIDASE JGI N/AIEA
PTHR10638:SF12Panther JGI N/AIEA
PF01179PFAM Copper amine oxidase, enzyme domain JGI N/AIEA
PF02727PFAM Copper amine oxidase, N2 domain JGI N/AIEA
PF02728PFAM Copper amine oxidase, N3 domain JGI N/AIEA
PWY-2SoyCyc9 putrescine degradation IV Plant Metabolic Network ISS
GN7V-52332SoyCyc9-rxn primary-amine oxidase Plant Metabolic Network ISS

Proteins Associated with Glyma.17g019300
LocusGene SymbolProtein Name
DAO copper amino oxidase

Expression Patterns of Glyma.17g019300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g019300
ParalogEvidenceComments
Glyma.07g255000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g019300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g02260 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g019300
>Glyma.17g019300.1 sequence-type=CDS polypeptide=Glyma.17g019300.1.p locus=Glyma.17g019300 ID=Glyma.17g019300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTACCTCCATGGTGAAGCTTATGCTTTTCTCTGCTCTCATACTCTTGTCCTTGCAAGCAGTTGTGTCTGTAACACCACTGCATTTTCAACATCCACTAGACCCTTTAACCAAACAAGAGATAAGTCTTGTCCAAACCATAGTCCAAAACAAGTACCCAAGCTCAAGTAACAGGTTGAGCTTCCACTACATTGGACTCGACGAACCTGAAAAGGATGCCATCCTCAAATGGGAATCCATCAAACCAACTGTTATAACTGTCCCTCGCAAAGCCTTGGCCATTGTTATAATCAACAGCCAAACCCACGAGATCTTAATTGATCTAAAGGCAAGGCGCATTGTCTCCGACAATATTCACTCCGGGAATGGCTTCCCTACCCTTTCCGTTGATGAACAAGTCGTTGCCATAGAGCTGCCACTGAAATACGGTCCATTCATTGAGTCAGTGAACAAGAGAGGGCTGAACCTCTCTGAGGTGGTGTGTTCCACATTCACAATGGGGTGGTTTGGAGAAACCAAGGACAGAAGGACAGTGAGAGTGGAATGCTTCATGAAAGAAAGCAGCCCCAATATCTGGGTGAGGCCTATCAGTGGACTCACAATGGTGGTTGACCTTGAACTCATGAAGATCGTTCAGTATCACGACGGTGGCATTATACCAGTACCAACTGCCGACAACACTGAATACCGCTTTTCACATCAGAACCCACCATTCGGTCCAAGACAACATAGTCTAGCAACCCATCAACCACAGGGTCCAGGCTTCCAAATCAACGGACACAGTATTAGTTGGGCCAACTGGAAGTTCCATATTGGATTTGATCCACGTGCCGGAATTGTAATATCACTGGCATCCATTTATGATTTGGAGAAGCACAAATCTCGTAGAGTGTTATACAAAGGTTACATTTCTGAGCTGTTTGTGCCATACCAAGACCCAACAGATGATTTTTACTATAAGACTTTCTTTGATGCTGGAGAGTTTGGGTTTGGTCTCTCCACGGTCTCATTGGTGCCCAACCGTGATTGCCCATCGAATGCTCAGTTCCTAGATACATATGTTCACGCTGCTGATGGTACTCCGTTACTCATCAAGAACGCAATCTGTGTCTTTGAACAATATGGCAGCATCATGTGGCGTCACACCGAAACAGGCATTCCCAATGAATCGTTCGAAGAAACGAGAACGGAAGTCAACTTAGTGGTAAGAACTGTTGTTACCGTGGGCAACTACGATAACATCATTGATTGGGAGTTTAAAACAAGTGGCTCAATCAAACCCTCGATTGCTCTCTCGGGTATATTGGAAATTAAGGGAGTGGATATTAAGCACAAGAGTGAGATCAAGAGCGATCAACATGGTATCTTGGTGTCGGCAAACAGCATTGGTGTTTACCACGACCACTTCTACATTTACCATCTTGACCTTGACATTGATGGTGTTGCCAACTCTTTTGAGAAGACAAGTTTGAAGACTGTAAGAGTGACAGATGGAAGTTCGAAGAGGAAAAGCTATTGGACAACTGAGGTTGAAACTGCCAAGACTGAAAATGATGCAAAGATAATACTTGGGTTGAGCCCTGGTGAGCTTTCAGTGGTGAATCCTAACAAGAAAACCTCTGTTGGAAATGATGTGGGATACCGTTTGATTCCAGCAATCCCAGCTCATCCTCTTCTCACAGATGACGATTATCCACAAATACGTGGCGCTTTTACCAATTTCAATGTGTGGGTCACTCCATACAATAGGACTGAGAAGTGGGCTGGTGGACTCTACGTTGATCACAGCCATGGAGATGATACTTTAGCCGTTTGGACCAAAAAGAATAGAGACATTAACAACAAGGACATTGTGCTGTGGCACGTTGTGGGAATTCATCATGTTCCAGCACAGGAAGACTTCCCCATAATGCCATTATTGAGCACTGCATTCGAGCTCAGGCCAACCAATTTCTTCGAGAGGAATCCGGTTCTTAAAACACTTTCTCCCCCGGATGTCCAATGGCCTGGTTGCCCCAAGTAA
Predicted protein sequences of Glyma.17g019300
>Glyma.17g019300.1.p sequence-type=predicted peptide transcript=Glyma.17g019300.1 locus=Glyma.17g019300 ID=Glyma.17g019300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATSMVKLMLFSALILLSLQAVVSVTPLHFQHPLDPLTKQEISLVQTIVQNKYPSSSNRLSFHYIGLDEPEKDAILKWESIKPTVITVPRKALAIVIINSQTHEILIDLKARRIVSDNIHSGNGFPTLSVDEQVVAIELPLKYGPFIESVNKRGLNLSEVVCSTFTMGWFGETKDRRTVRVECFMKESSPNIWVRPISGLTMVVDLELMKIVQYHDGGIIPVPTADNTEYRFSHQNPPFGPRQHSLATHQPQGPGFQINGHSISWANWKFHIGFDPRAGIVISLASIYDLEKHKSRRVLYKGYISELFVPYQDPTDDFYYKTFFDAGEFGFGLSTVSLVPNRDCPSNAQFLDTYVHAADGTPLLIKNAICVFEQYGSIMWRHTETGIPNESFEETRTEVNLVVRTVVTVGNYDNIIDWEFKTSGSIKPSIALSGILEIKGVDIKHKSEIKSDQHGILVSANSIGVYHDHFYIYHLDLDIDGVANSFEKTSLKTVRVTDGSSKRKSYWTTEVETAKTENDAKIILGLSPGELSVVNPNKKTSVGNDVGYRLIPAIPAHPLLTDDDYPQIRGAFTNFNVWVTPYNRTEKWAGGLYVDHSHGDDTLAVWTKKNRDINNKDIVLWHVVGIHHVPAQEDFPIMPLLSTAFELRPTNFFERNPVLKTLSPPDVQWPGCPK*






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