SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.17g018800

Feature Type:gene_model
Chromosome:Gm17
Start:1405969
stop:1411762
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g018800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G19010.1AT mitogen-activated protein kinase 16 JGI N/AIEA
GO:0000165GO-bp MAPK cascade EnsemblGenomesN/AIEA
GO:0006468GO-bp protein phosphorylation EnsemblGenomesN/AIEA
GO:0006468GO-bp protein phosphorylation JGI N/AIEA
GO:0009103GO-bp lipopolysaccharide biosynthetic process JGI N/AIEA
GO:0010468GO-bp regulation of gene expression EnsemblGenomesN/AIEA
GO:0016310GO-bp phosphorylation EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity JGI N/AIEA
GO:0004674GO-mf protein serine/threonine kinase activity EnsemblGenomesN/AIEA
GO:0004707GO-mf MAP kinase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0016301GO-mf kinase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016773GO-mf phosphotransferase activity, alcohol group as acceptor JGI N/AIEA
KOG0658 KOG Glycogen synthase kinase-3 JGI N/AIEA
KOG0660 KOG Mitogen-activated protein kinase JGI N/AIEA
PTHR24055Panther MITOGEN-ACTIVATED PROTEIN KINASE JGI N/AIEA
PTHR24055:SF69Panther JGI N/AIEA
PF00069PFAM Protein kinase domain JGI N/AIEA

Expression Patterns of Glyma.17g018800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g018800
ParalogEvidenceComments
Glyma.07g255400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g018800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g02220 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.17g018800
>Glyma.17g018800.2 sequence-type=transcript locus=Glyma.17g018800 ID=Glyma.17g018800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTGGCTGATATTGCTGGGAGTATTTTAGTCATCTGTAGATATAGACTTCTTTACAGAATACGGTGAAGGGAGTAGATACAAAATAGAGGAAGTAATAGGTAAAGGAAGCTATGGTGTTGTTTGCTCTGCATATGATACACACACCGGAGAAAAGGTTGCAATAAAGAAAATCAATGACATATTTGAACATGTTTCTGATGCCACGCGCATTCTTCGTGAGATCAAGCTTCTTAGACTCTTACGCCATCCTGATATTGTGGAGATCAAGCATATTTTGTTACCTCCTTCTAGAAGGGAGTTCAAAGATATATATGTTGTTTTTGAACGTATGGAATCTGATTTACATCAGGTCATCAAAGCAAATGATGATTTGACTCCAGAGCATTATCAGTTTTTTCTCTATCAGCTTCTTCGAGGCTTGAAGTATATACACCGAGCAAATGTTTTTCACCGAGATCTAAAGCCAAAAAATATTTTAGCAAATGCTGACTGCAAACTGAAGATTTGTGACTTCGGTCTTGCCAGAGTGGCTTTCAATGATACACCAACTGCTATATTTTGGACAGATTATGTTGCAACAAGGTGGTATAGAGCTCCTGAATTGTGTGGATCCTTTTTCTCCAAGTATACCCCAGCTATAGACATATGGAGCATTGGCTGCATTTTTGCAGAACTTTTAACTGGAAAACCTCTTTTCCCAGGGAAGAATGTTGTCCATCAATTGGACCTCATGACTGATTTTCTTGGAACACCGTCTCCTGAAGCCATTGCTAGGGTACGGAATGAGAAAGCTCGGAGATACTTGAGTAGCATGCGTAAGAAGAAGCCAGTTCCTTTCTCCCAAAAGTTTCCTAATGTAGACCCCCTTGCTCTTCGTGTGTTACAAAGAATGCTGGCATTTGAACCTAAGGATCGACCTACTGCTGAAGAGGCTCTAGCAGATTCTTATTTTAAAGGCTTGGCCAAGGTTGAGAGAGAGCCTTCTGCCCAGCCAGTTACCAAGATAGAATTTGAATTCGAGAGACATAGGATAACAAAGGAAGACGTGCGAGAGCTTATATACCGAGAGATTCTGGAGTACCATCCGAAGATGTTAAAAGAACATCTAGAGGGAGCCGAGCCAACAGGATTCATGTATCCAAGTGCGGTGGATCACTTCAAGAAGCAATTTGCATATCTTGAGGAGCATTATGGAAAAGGTGGAACTGTTACTCCACCCGAGAGGCAACATGCATCATTACCCAGGTCATGTGTGTTGTATTCAGATAACTCAAGACCAAATATGGCTGAGGTTGCAGATGATATCTCCAGGTGTAGCATCAAAGAAGTTGAGAAGCCAGCCATGGACAGGACTGGTGGTATCCCAATGGCCAGGCTTCCTTTACAAGCTCCTCAAAATATTCAAGGTGTGATGACTGATCGTAGTATGTACTTTGCTGCTTCTCCATTCCCCCCTTTCTTTTTTCTTTCCTGCCTCTCATATGTGCATGACAGGAATTATCTTCAAAGAGTGTTGTGCTCATTGTTGAGGCTTGTTACATTTGGTTCATCATTCTTTGAACCAATAAGAATTATGTTTCTGGTTGTGTGAACTTGTTCTTGCTTCTGTCACATGATGGGAATTATGTGTGAATGGATGAAAGCAGCAGGACTTGTATTAATGAGATAGAGCAATGGATTTTTTAAGATTCTTTTTGATGATTTATCTTTTGGCATAATATCCTGTGTTAGGCACACATGAACACATCCATGATTTGTTATGCATGTGTTTGTGCTTGAAACATTGACTGTTGATTTTTCATCAACTATTGAAATTACTTCTTTACCTATAAATTA
Coding sequences of Glyma.17g018800
>Glyma.17g018800.1 sequence-type=CDS polypeptide=Glyma.17g018800.1.p locus=Glyma.17g018800 ID=Glyma.17g018800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCTCATGATCAGAGAAAAAAGTCATCTGTAGATATAGACTTCTTTACAGAATACGGTGAAGGGAGTAGATACAAAATAGAGGAAGTAATAGGTAAAGGAAGCTATGGTGTTGTTTGCTCTGCATATGATACACACACCGGAGAAAAGGTTGCAATAAAGAAAATCAATGACATATTTGAACATGTTTCTGATGCCACGCGCATTCTTCGTGAGATCAAGCTTCTTAGACTCTTACGCCATCCTGATATTGTGGAGATCAAGCATATTTTGTTACCTCCTTCTAGAAGGGAGTTCAAAGATATATATGTTGTTTTTGAACGTATGGAATCTGATTTACATCAGGTCATCAAAGCAAATGATGATTTGACTCCAGAGCATTATCAGTTTTTTCTCTATCAGCTTCTTCGAGGCTTGAAGTATATACACCGAGCAAATGTTTTTCACCGAGATCTAAAGCCAAAAAATATTTTAGCAAATGCTGACTGCAAACTGAAGATTTGTGACTTCGGTCTTGCCAGAGTGGCTTTCAATGATACACCAACTGCTATATTTTGGACAGATTATGTTGCAACAAGGTGGTATAGAGCTCCTGAATTGTGTGGATCCTTTTTCTCCAAGTATACCCCAGCTATAGACATATGGAGCATTGGCTGCATTTTTGCAGAACTTTTAACTGGAAAACCTCTTTTCCCAGGGAAGAATGTTGTCCATCAATTGGACCTCATGACTGATTTTCTTGGAACACCGTCTCCTGAAGCCATTGCTAGGGTACGGAATGAGAAAGCTCGGAGATACTTGAGTAGCATGCGTAAGAAGAAGCCAGTTCCTTTCTCCCAAAAGTTTCCTAATGTAGACCCCCTTGCTCTTCGTGTGTTACAAAGAATGCTGGCATTTGAACCTAAGGATCGACCTACTGCTGAAGAGGCTCTAGCAGATTCTTATTTTAAAGGCTTGGCCAAGGTTGAGAGAGAGCCTTCTGCCCAGCCAGTTACCAAGATAGAATTTGAATTCGAGAGACATAGGATAACAAAGGAAGACGTGCGAGAGCTTATATACCGAGAGATTCTGGAGTACCATCCGAAGATGTTAAAAGAACATCTAGAGGGAGCCGAGCCAACAGGATTCATGTATCCAAGTGCGGTGGATCACTTCAAGAAGCAATTTGCATATCTTGAGGAGCATTATGGAAAAGGTGGAACTGTTACTCCACCCGAGAGGCAACATGCATCATTACCCAGGTCATGTGTGTTGTATTCAGATAACTCAAGACCAAATATGGCTGAGGTTGCAGATGATATCTCCAGGTGTAGCATCAAAGAAGTTGAGAAGCCAGCCATGGACAGGACTGGTGGTATCCCAATGGCCAGGCTTCCTTTACAAGCTCCTCAAAATATTCAAGGTGTGATGACTGATCGTAGTATGTACTTTGCTGCTTCTCCATTCCCCCCTTTCTTTTTTCTTTCCTGCCTCTCATATGTGCATGACAGGAATTATCTTCAAAGAGTGTTGTGCTCATTGTTGAGGCTTGTTACATTTGGTTCATCATTCTTTGAACCAATAAGAATTATGTTTCTGGTTGTGTGA

>Glyma.17g018800.2 sequence-type=CDS polypeptide=Glyma.17g018800.2.p locus=Glyma.17g018800 ID=Glyma.17g018800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAATCTGATTTACATCAGGTCATCAAAGCAAATGATGATTTGACTCCAGAGCATTATCAGTTTTTTCTCTATCAGCTTCTTCGAGGCTTGAAGTATATACACCGAGCAAATGTTTTTCACCGAGATCTAAAGCCAAAAAATATTTTAGCAAATGCTGACTGCAAACTGAAGATTTGTGACTTCGGTCTTGCCAGAGTGGCTTTCAATGATACACCAACTGCTATATTTTGGACAGATTATGTTGCAACAAGGTGGTATAGAGCTCCTGAATTGTGTGGATCCTTTTTCTCCAAGTATACCCCAGCTATAGACATATGGAGCATTGGCTGCATTTTTGCAGAACTTTTAACTGGAAAACCTCTTTTCCCAGGGAAGAATGTTGTCCATCAATTGGACCTCATGACTGATTTTCTTGGAACACCGTCTCCTGAAGCCATTGCTAGGGTACGGAATGAGAAAGCTCGGAGATACTTGAGTAGCATGCGTAAGAAGAAGCCAGTTCCTTTCTCCCAAAAGTTTCCTAATGTAGACCCCCTTGCTCTTCGTGTGTTACAAAGAATGCTGGCATTTGAACCTAAGGATCGACCTACTGCTGAAGAGGCTCTAGCAGATTCTTATTTTAAAGGCTTGGCCAAGGTTGAGAGAGAGCCTTCTGCCCAGCCAGTTACCAAGATAGAATTTGAATTCGAGAGACATAGGATAACAAAGGAAGACGTGCGAGAGCTTATATACCGAGAGATTCTGGAGTACCATCCGAAGATGTTAAAAGAACATCTAGAGGGAGCCGAGCCAACAGGATTCATGTATCCAAGTGCGGTGGATCACTTCAAGAAGCAATTTGCATATCTTGAGGAGCATTATGGAAAAGGTGGAACTGTTACTCCACCCGAGAGGCAACATGCATCATTACCCAGGTCATGTGTGTTGTATTCAGATAACTCAAGACCAAATATGGCTGAGGTTGCAGATGATATCTCCAGGTGTAGCATCAAAGAAGTTGAGAAGCCAGCCATGGACAGGACTGGTGGTATCCCAATGGCCAGGCTTCCTTTACAAGCTCCTCAAAATATTCAAGGTGTGATGACTGATCGTAGTATGTACTTTGCTGCTTCTCCATTCCCCCCTTTCTTTTTTCTTTCCTGCCTCTCATATGTGCATGACAGGAATTATCTTCAAAGAGTGTTGTGCTCATTGTTGAGGCTTGTTACATTTGGTTCATCATTCTTTGAACCAATAAGAATTATGTTTCTGGTTGTGTGA
Predicted protein sequences of Glyma.17g018800
>Glyma.17g018800.1.p sequence-type=predicted peptide transcript=Glyma.17g018800.1 locus=Glyma.17g018800 ID=Glyma.17g018800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPHDQRKKSSVDIDFFTEYGEGSRYKIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFERMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHRANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDFLGTPSPEAIARVRNEKARRYLSSMRKKKPVPFSQKFPNVDPLALRVLQRMLAFEPKDRPTAEEALADSYFKGLAKVEREPSAQPVTKIEFEFERHRITKEDVRELIYREILEYHPKMLKEHLEGAEPTGFMYPSAVDHFKKQFAYLEEHYGKGGTVTPPERQHASLPRSCVLYSDNSRPNMAEVADDISRCSIKEVEKPAMDRTGGIPMARLPLQAPQNIQGVMTDRSMYFAASPFPPFFFLSCLSYVHDRNYLQRVLCSLLRLVTFGSSFFEPIRIMFLVV*

>Glyma.17g018800.2.p sequence-type=predicted peptide transcript=Glyma.17g018800.2 locus=Glyma.17g018800 ID=Glyma.17g018800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHRANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDFLGTPSPEAIARVRNEKARRYLSSMRKKKPVPFSQKFPNVDPLALRVLQRMLAFEPKDRPTAEEALADSYFKGLAKVEREPSAQPVTKIEFEFERHRITKEDVRELIYREILEYHPKMLKEHLEGAEPTGFMYPSAVDHFKKQFAYLEEHYGKGGTVTPPERQHASLPRSCVLYSDNSRPNMAEVADDISRCSIKEVEKPAMDRTGGIPMARLPLQAPQNIQGVMTDRSMYFAASPFPPFFFLSCLSYVHDRNYLQRVLCSLLRLVTFGSSFFEPIRIMFLVV*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo