Glyma.17g017100

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Report for Sequence Feature Glyma.17g017100

Feature Type:	gene_model
Chromosome:	Gm17
Start:	1268221
stop:	1274210
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.17g017100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G19070.1	AT	SNARE associated Golgi protein family	JGI	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
PTHR12677	Panther	UNCHARACTERIZED	JGI	N/A	IEA
PF09335	PFAM	SNARE associated Golgi protein	JGI	N/A	IEA

Expression Patterns of Glyma.17g017100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.17g017100

Paralog	Evidence	Comments
Glyma.07g257000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g017100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma17g02050	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.17g017100

Limit To All Plant Sequences

>Glyma.17g017100.2 sequence-type=transcript locus=Glyma.17g017100 ID=Glyma.17g017100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTAAGAAAATATGATGTAATGTGTCAAGTGCAGTAAACAACTTACAGAGGGAAGCAACCCGTATTATACTGTGTTAGTTCCGATTTTTCTAAGACGACGAGATTGAATTTTGTTTTTGGAGGCACAAACACAACAAACAAAGTGAGATAAGATCAGATTCACAGGACACGACACGAACATTAATCTTAAACCCTTTATCATTTGAATGAACGAACGAGAACGACCATGTCTTTCTCGTGGACCTCTGCTCTCAATATCACTTTTCTACTTCTCCTCGTTGCTGCTGCTGTTGTTGCTTGTTTAACTCTCCCAGTTGACAAGATTCTGAAGGACTTGTTGGAATGGATTGATCGTAATTTAGGGCCATGGGGTCCACTTGCTTTGATTGCTGCTTACATTCCTTTGACTGTCTTGTCTGTTCCAGCCTCTGTACTTACTCTTGGTGGTGGTTATCTATTTGGCCTTCCAATTGGCTTCATTGCTGACTCTATTGGTGCAACCGTTGGTGCTGTAGCTGCATTTCTTCTTGGTAGAACAATTGGGAAATCACTTGTTGTTTCTAGGTTGAAGGATTATCCACAGTTTAGATTAGTAACAATTGCAATTCAGAGATCTGGCTTTAAGATTTCAATACTCCTTCGGCTTGCTCCATTTGTACCATTTAACATGTTAAATTACCTCCTATCTGTGACTCCTGTTCCATTAGGGGAGTACACACTGGCTTCTTGGTTAGGAATGATGCCAATAACACTGGCACTTGTATATGTTGGAACTACGTTCAAGGATCTATCAGATGTGACTCGTGGCTGGAGTGAGTTCTCAAAGACTCATTTGCCTTGGATCATTTCTGGCCTGGTGATATCTGCTTTGTATGCCGCCAGCTCAGTGCTGCAATGGCTGGGCAGCAGATGAG

Coding sequences of Glyma.17g017100

Limit To All Plant Sequences

>Glyma.17g017100.1 sequence-type=CDS polypeptide=Glyma.17g017100.1.p locus=Glyma.17g017100 ID=Glyma.17g017100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTTCTCGTGGACCTCTGCTCTCAATATCACTTTTCTACTTCTCCTCGTTGCTGCTGCTGTTGTTGCTTGTTTAACTCTCCCAGTTGACAAGATTCTGAAGGACTTGTTGGAATGGATTGATCGTAATTTAGGGCCATGGGGTCCACTTGCTTTGATTGCTGCTTACATTCCTTTGACTGTCTTGTCTGTTCCAGCCTCTGTACTTACTCTTGGTGGTGGTTATCTATTTGGCCTTCCAATTGGCTTCATTGCTGACTCTATTGGTGCAACCGTTGGTGCTGTAGCTGCATTTCTTCTTGGTAGAACAATTGGGAAATCACTTGTTGTTTCTAGGTTGAAGGATTATCCACAGTTTAGATTAGTAACAATTGCAATTCAGAGATCTGGCTTTAAGATTTCAATACTCCTTCGGCTTGCTCCATTTGTACCATTTAACATGTTAAATTACCTCCTATCTGTGACTCCTGTTCCATTAGGGGAGTACACACTGGCTTCTTGGTTAGGAATGATGCCAATAACACTGGCACTTGTATATGTTGGAACTACGTTCAAGGATCTATCAGATGTGACTCGTGGCTGGAGTGAGTTCTCAAAGACTCATTTGCCTTGGATCATTTCTGGCCTGGTGATATCTGTGGTTCTAATGATATGGGTTACTAAAGTTGCCAAGTCTGCTTTAGATGAAGCCTTGGCAGAATGTGAAGATATGAATGACACTGCATCTTCACCAGAGCTACCAATTGTCACTGAAACTTTAGTAGATCTCAATCAGCCTCTCATAAATAAGACAAACCAGGATGAAGACAATCTAAATTCCAGTGTGTAA

>Glyma.17g017100.2 sequence-type=CDS polypeptide=Glyma.17g017100.2.p locus=Glyma.17g017100 ID=Glyma.17g017100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTTCTCGTGGACCTCTGCTCTCAATATCACTTTTCTACTTCTCCTCGTTGCTGCTGCTGTTGTTGCTTGTTTAACTCTCCCAGTTGACAAGATTCTGAAGGACTTGTTGGAATGGATTGATCGTAATTTAGGGCCATGGGGTCCACTTGCTTTGATTGCTGCTTACATTCCTTTGACTGTCTTGTCTGTTCCAGCCTCTGTACTTACTCTTGGTGGTGGTTATCTATTTGGCCTTCCAATTGGCTTCATTGCTGACTCTATTGGTGCAACCGTTGGTGCTGTAGCTGCATTTCTTCTTGGTAGAACAATTGGGAAATCACTTGTTGTTTCTAGGTTGAAGGATTATCCACAGTTTAGATTAGTAACAATTGCAATTCAGAGATCTGGCTTTAAGATTTCAATACTCCTTCGGCTTGCTCCATTTGTACCATTTAACATGTTAAATTACCTCCTATCTGTGACTCCTGTTCCATTAGGGGAGTACACACTGGCTTCTTGGTTAGGAATGATGCCAATAACACTGGCACTTGTATATGTTGGAACTACGTTCAAGGATCTATCAGATGTGACTCGTGGCTGGAGTGAGTTCTCAAAGACTCATTTGCCTTGGATCATTTCTGGCCTGGTGATATCTGCTTTGTATGCCGCCAGCTCAGTGCTGCAATGGCTGGGCAGCAGATGA

Predicted protein sequences of Glyma.17g017100

Limit To All Plant Sequences

>Glyma.17g017100.1.p sequence-type=predicted peptide transcript=Glyma.17g017100.1 locus=Glyma.17g017100 ID=Glyma.17g017100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSFSWTSALNITFLLLLVAAAVVACLTLPVDKILKDLLEWIDRNLGPWGPLALIAAYIPLTVLSVPASVLTLGGGYLFGLPIGFIADSIGATVGAVAAFLLGRTIGKSLVVSRLKDYPQFRLVTIAIQRSGFKISILLRLAPFVPFNMLNYLLSVTPVPLGEYTLASWLGMMPITLALVYVGTTFKDLSDVTRGWSEFSKTHLPWIISGLVISVVLMIWVTKVAKSALDEALAECEDMNDTASSPELPIVTETLVDLNQPLINKTNQDEDNLNSSV*

>Glyma.17g017100.2.p sequence-type=predicted peptide transcript=Glyma.17g017100.2 locus=Glyma.17g017100 ID=Glyma.17g017100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSFSWTSALNITFLLLLVAAAVVACLTLPVDKILKDLLEWIDRNLGPWGPLALIAAYIPLTVLSVPASVLTLGGGYLFGLPIGFIADSIGATVGAVAAFLLGRTIGKSLVVSRLKDYPQFRLVTIAIQRSGFKISILLRLAPFVPFNMLNYLLSVTPVPLGEYTLASWLGMMPITLALVYVGTTFKDLSDVTRGWSEFSKTHLPWIISGLVISALYAASSVLQWLGSR*

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