Glyma.17g016000

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Report for Sequence Feature Glyma.17g016000

Feature Type:	gene_model
Chromosome:	Gm17
Start:	1189671
stop:	1195046
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.17g016000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G19180.1	AT	E1 C-terminal related 1	JGI	N/A	IEA
GO:0006464	GO-bp	cellular protein modification process	JGI	N/A	IEA
GO:0045116	GO-bp	protein neddylation	EnsemblGenomes	N/A	IEA
GO:0045116	GO-bp	protein neddylation	JGI	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	JGI	N/A	IEA
GO:0005524	GO-mf	ATP binding	EnsemblGenomes	N/A	IEA
GO:0005524	GO-mf	ATP binding	JGI	N/A	IEA
GO:0008641	GO-mf	ubiquitin-like modifier activating enzyme activity	EnsemblGenomes	N/A	IEA
GO:0008641	GO-mf	small protein activating enzyme activity	JGI	N/A	IEA
GO:0016881	GO-mf	acid-amino acid ligase activity	EnsemblGenomes	N/A	IEA
GO:0016881	GO-mf	acid-amino acid ligase activity	JGI	N/A	IEA
GO:0019781	GO-mf	NEDD8 activating enzyme activity	EnsemblGenomes	N/A	IEA
KOG2015	KOG	NEDD8-activating complex, catalytic component UBA3	JGI	N/A	IEA
PTHR10953	Panther	UBIQUITIN-ACTIVATING ENZYME E1	JGI	N/A	IEA
PTHR10953:SF6	Panther	NEDD8-ACTIVATING ENZYME E1 CATALYTIC SUBUNIT	JGI	N/A	IEA
PF00899	PFAM	ThiF family	JGI	N/A	IEA
PF02134	PFAM	Repeat in ubiquitin-activating (UBA) protein	JGI	N/A	IEA
PF08825	PFAM	E2 binding domain	JGI	N/A	IEA
PF10585	PFAM	Ubiquitin-activating enzyme active site	JGI	N/A	IEA

Expression Patterns of Glyma.17g016000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g016000 not represented in the dataset	Glyma.17g016000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.17g016000

Paralog	Evidence	Comments
Glyma.07g258000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g016000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma17g01940	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.17g016000

Limit To All Plant Sequences

>Glyma.17g016000.2 sequence-type=transcript locus=Glyma.17g016000 ID=Glyma.17g016000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTCTTCCACATCATTTTTTCTTTCTTCGGCTTCCACACCATTTATAAGCAAGTTGAATTATTTTATATAAACATTCTTGGTACTATTTTACAATTAATCAAATTTGTAGTTTTCAATATTTTATACAAATGCCATTCAATAATGTTATTGGTAGCTTAACCAAAGGAATCTCGAAGGAGTTTCTATCTGATATCTTTCTTGTTCTTCGACTAGAGTAAATGTGCTCCTTGAGAAGGCATGAATTGCTCTTTAGAGCTAGGGCTCTTTTCGTTGGGTTTCGGTTCATTTTTGTATAATTGATGGTAATGTCATGCCTAATTAGAATCACAACAGAAATCAAAATTTGTCTGAAACTTGTTTATGCTCATCCTCTCTCTCCTCGTCTCAGTGGAGGACAAACCACGCCGCCTCCATGGAGTTTCGCAAAGCGTGTAGAGAATCCCATCGGGTCTGTTTTGAATTCTGATGCCTAACCGCACTCAAATCGCCGTTCTCGTCGAGGAGGAGATCTCCGGCTTGAGGTCGCGCTGGAAGACGTCGCGCGAGTGGCAGTACTCGACGACAAAATCAATTGATGGAAGTACCTCCGACTCAGATCCTCCGCGAAGAGTCCCATCGCACAGCCCTCTTTCGAGGAGGAACGCAAAATGGCCCTCGTCTTGGATCACGAACTCGAGTTCCTCGACCATTTGTTGTGTTTCTTCCTCGTTTCTCCGTCGACCACTTGTTGTGTTTTTCAAATCTCGGTTTATGCTGTCTTGTGAATTGGTTCAGATCTGGGCCTTAAATACTATTTTATGGCAATTTCTGGTTGCTTAAAGCCCCAAAATGAGGAATTCATACTACTTTTCTTTATAAAATAAAGGATGAAACAGGTCATTTAGCCGATAAAGAATAAGTAAAACTCTTTCTTTTGTTGCACGTAGCCACTTCCAAGATCTGTTGAATCTGAAAATCTTGCTGTTCGAAAAATATACTTTATACTTTATATAGTAATAAAAAATTTAAATGTGTATATACATTTTATTAAAAATTTCAATTACTGTACATAATTTTTTTCACATTATTTTATATATATTGAATAGTTATTAATTAGTTTTATCACACGCTTCTAAATATATAAATTTCTCAACTTTTTGTTTTCATCTCTCATTTTTCCAATTTTTTTTATGTTTTTTTTTAACTTTTAACTAAATTTTAACAGTGAATACCAACAATTGTAATCAAGAAAATTTTATATTGTACTGTATTTTATTATTGGAATAACAAATGTTAACTTTTAAATCAAACACATATATCTTAATTATTTTAATGAGTTTAAAAGTAATTTGATCGAAATAAATAAAAGTCATGATCTACTACTACGCATCCAATAGAATAAAAGATTAGCTTAAAATTAAAGCTAAAAAAGAAAAAAGGAAAAAGTGTGCAATAGGGAGTAGACAGTAGACAGAAAATCAGAGGCGCGAGTGGCGGTGAAGGCAGCGAGGGAAGGGAAGCATCTTTAGCTCCAATGGCGGATACCTCAGGTCGATCCAGGGACCTCGACAAGCTCCTTCTCCGCCCTGGCAATCTCGTCGGTCCCAGGTTCGAACCAGGCGCTGAGTTGCGAGATGACCTTCAGGCCTTCGCCAAAGTGTTGGTGGTAGGGGCCGGTGGCTTAGGTTGTGAGTTGTTGAAGGATTTAGCCCTCTCTGGTTTCCGAAACCTTGAGGTCATTGATATGGATCGCATAGAGGTTACTAATCTCAACCGCCAATTCTTGTTCAGACTTGAAGATGTTGGCAAACCCAAAGCCGAGGTAGCTGCCAAGCGTGTCATGGAGAGAATTACTGGTGTCGAAATTGTGCCCCACTTTTGCAGGATTGAGGACAAGGAAATAGAATTTTACAATGATTTTAGCATTATTGCCCTTGGTCTTGATTCCATTGAGGCCCGGAGCTATATCAATACTGTTGCCTGTAGTTTTCTAGAGTATGATTCTGATGATAATCCTCGAGAAGAGACAATCAAACCTATGGTGGATGGTGGGACTGAAGGTTTCAAGGGCCATGCTAGGGTTATCTTGCCAGGGATCACACCGTGCTTTGAATGTACTGTCTGGCTTTTTCCACCTCAAGTTAAGTTTCCTTTGTGTACCCTGGCTGAAACCCCTAGAACTGCTGCCCACTGTATTGAATATGCCCACTTGATTAAGTGGAATGAGGTTCATGGCGGAGTGGCTTTTGATCCAGATAACCCTGAGCATATGAAATGGGTTTATGACGAGGCTGTCAAGAGGGCTGAGCTTTTTGGCATTCCTGGAGTTACTTATTCTCTTACCCAGGGTGTTGTGAAGAACATCATACCAGCTATAGCTTCAACGAATGCAATTATATCGGCTGCATGTGCACTAGAAACATTAAAGATTGCAACAGAGTGCAGCAAAATTTTGTCGAACTATTTAACGTATAATGGATCAGAAGGCCTCCATACTGAAGTGGCAAGATTTGAAAGGGACAAGGACTGTCTTGTGTGTGGTCCTGGTATACGTATTGAATTGGATACTTCAATCACATTGCAAAAGTTCATGGATCTTCTGGAAGAACATCCTAAGTTGCGATTATCAAAAGCTAGTATTACGCATCAAGGAAAGAATCTGTACATGCAAGCTCCCCCTGTATTGGAAGAAATGACTCGATCAAACCTGAGTCTCTCTCTTTTTAATCTCATGGGTAGATTGCCCAAGGATGTTGTGCATGTGAATGGTACAACAATCAAGAACGACCAAAAGTTCTCCTGTTCGAGAAAATTACGTGTTGTTTTCAAGGGAGTTGACGGGGTTACAGATATGGATACAGCTGGAGGAGCATAACTTACAACATCCAAACATGTTTTGCTGCTTGAATTTTTTTGGCTCTATAAGCATAATTAATGTTAGATATCACAGCTTGTTTCCAATATTGGTCAGGGTGTAGAATTTTGGCAACTCCATTTTATCATATGCGCTTAGATTGATGGAGCACAGTTAGACTATGGATATCTGATGCAATTAAGTTGCTTAATTGTTTCTAAGTGCCCGTATTTCATCTCTGAAATTCTGAAGCCGGACTTAAAATATCTTGATGGAGATGGACTGTAAATTTATTGTGGTAGAGAAATGTGTACGTGAGTATCATTTGGCAGTGAATGGTTGAGAATTTTGAACattctgattactagttgttattattattattaAAGTGAGGTCAAGGCGCCTATTTAGGCTTTGGAATGAATAGGAGATGCATTAGAATTTTAGAATGGCCCAGCTTAAAGAGACTAAAAAAGATGCCCTGAGGCTGTGTTTGTTTTTTTTTGTTTTTTTggaggt

Coding sequences of Glyma.17g016000

Limit To All Plant Sequences

>Glyma.17g016000.1 sequence-type=CDS polypeptide=Glyma.17g016000.1.p locus=Glyma.17g016000 ID=Glyma.17g016000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGATACCTCAGGTCGATCCAGGGACCTCGACAAGCTCCTTCTCCGCCCTGGCAATCTCGTCGGTCCCAGGTTCGAACCAGGCGCTGAGTTGCGAGATGACCTTCAGGCCTTCGCCAAAGTGTTGGTGGTAGGGGCCGGTGGCTTAGGTTGTGAGTTGTTGAAGGATTTAGCCCTCTCTGGTTTCCGAAACCTTGAGGTCATTGATATGGATCGCATAGAGGTTACTAATCTCAACCGCCAATTCTTGTTCAGACTTGAAGATGTTGGCAAACCCAAAGCCGAGGTAGCTGCCAAGCGTGTCATGGAGAGAATTACTGGTGTCGAAATTGTGCCCCACTTTTGCAGGATTGAGGACAAGGAAATAGAATTTTACAATGATTTTAGCATTATTGCCCTTGGTCTTGATTCCATTGAGGCCCGGAGCTATATCAATACTGTTGCCTGTAGTTTTCTAGAGTATGATTCTGATGATAATCCTCGAGAAGAGACAATCAAACCTATGGTGGATGGTGGGACTGAAGGTTTCAAGGGCCATGCTAGGGTTATCTTGCCAGGGATCACACCGTGCTTTGAATGTACTGTCTGGCTTTTTCCACCTCAAGTTAAGTTTCCTTTGTGTACCCTGGCTGAAACCCCTAGAACTGCTGCCCACTGTATTGAATATGCCCACTTGATTAAGTGGAATGAGGTTCATGGCGGAGTGGCTTTTGATCCAGATAACCCTGAGCATATGAAATGGGTTTATGACGAGGCTGTCAAGAGGGCTGAGCTTTTTGGCATTCCTGGAGTTACTTATTCTCTTACCCAGGGTGTTGTGAAGAACATCATACCAGCTATAGCTTCAACGAATGCAATTATATCGGCTGCATGTGCACTAGAAACATTAAAGATTGCAACAGAGTGCAGCAAAATTTTGTCGAACTATTTAACGTATAATGGATCAGAAGGCCTCCATACTGAAGTGGCAAGATTTGAAAGGGACAAGGACTGTCTTGTGTGTGGTCCTGGTATACGTATTGAATTGGATACTTCAATCACATTGCAAAAGTTCATGGATCTTCTGGAAGAACATCCTAAGTTGCGATTATCAAAAGCTAGTATTACGCATCAAGGAAAGAATCTGTACATGCAAGCTCCCCCTGTATTGGAAGAAATGACTCGATCAAACCTGAGTCTCTCTCTTTTTAATCTCATGGGTAGATTGCCCAAGGATGTTGTGCATGTGAATGGTACAACAATCAAGAACGACCAAAAGTTCTCCTGTTCGAGAAAATTACGTGTTGTTTTCAAGGGAGTTGACGGGGTTACAGATATGGATACAGCTGGAGGAGCATAA

>Glyma.17g016000.2 sequence-type=CDS polypeptide=Glyma.17g016000.2.p locus=Glyma.17g016000 ID=Glyma.17g016000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGATACCTCAGGTCGATCCAGGGACCTCGACAAGCTCCTTCTCCGCCCTGGCAATCTCGTCGGTCCCAGGTTCGAACCAGGCGCTGAGTTGCGAGATGACCTTCAGGCCTTCGCCAAAGTGTTGGTGGTAGGGGCCGGTGGCTTAGGTTGTGAGTTGTTGAAGGATTTAGCCCTCTCTGGTTTCCGAAACCTTGAGGTCATTGATATGGATCGCATAGAGGTTACTAATCTCAACCGCCAATTCTTGTTCAGACTTGAAGATGTTGGCAAACCCAAAGCCGAGGTAGCTGCCAAGCGTGTCATGGAGAGAATTACTGGTGTCGAAATTGTGCCCCACTTTTGCAGGATTGAGGACAAGGAAATAGAATTTTACAATGATTTTAGCATTATTGCCCTTGGTCTTGATTCCATTGAGGCCCGGAGCTATATCAATACTGTTGCCTGTAGTTTTCTAGAGTATGATTCTGATGATAATCCTCGAGAAGAGACAATCAAACCTATGGTGGATGGTGGGACTGAAGGTTTCAAGGGCCATGCTAGGGTTATCTTGCCAGGGATCACACCGTGCTTTGAATGTACTGTCTGGCTTTTTCCACCTCAAGTTAAGTTTCCTTTGTGTACCCTGGCTGAAACCCCTAGAACTGCTGCCCACTGTATTGAATATGCCCACTTGATTAAGTGGAATGAGGTTCATGGCGGAGTGGCTTTTGATCCAGATAACCCTGAGCATATGAAATGGGTTTATGACGAGGCTGTCAAGAGGGCTGAGCTTTTTGGCATTCCTGGAGTTACTTATTCTCTTACCCAGGGTGTTGTGAAGAACATCATACCAGCTATAGCTTCAACGAATGCAATTATATCGGCTGCATGTGCACTAGAAACATTAAAGATTGCAACAGAGTGCAGCAAAATTTTGTCGAACTATTTAACGTATAATGGATCAGAAGGCCTCCATACTGAAGTGGCAAGATTTGAAAGGGACAAGGACTGTCTTGTGTGTGGTCCTGGTATACGTATTGAATTGGATACTTCAATCACATTGCAAAAGTTCATGGATCTTCTGGAAGAACATCCTAAGTTGCGATTATCAAAAGCTAGTATTACGCATCAAGGAAAGAATCTGTACATGCAAGCTCCCCCTGTATTGGAAGAAATGACTCGATCAAACCTGAGTCTCTCTCTTTTTAATCTCATGGGTAGATTGCCCAAGGATGTTGTGCATGTGAATGGTACAACAATCAAGAACGACCAAAAGTTCTCCTGTTCGAGAAAATTACGTGTTGTTTTCAAGGGAGTTGACGGGGTTACAGATATGGATACAGCTGGAGGAGCATAA

Predicted protein sequences of Glyma.17g016000

Limit To All Plant Sequences

>Glyma.17g016000.1.p sequence-type=predicted peptide transcript=Glyma.17g016000.1 locus=Glyma.17g016000 ID=Glyma.17g016000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADTSGRSRDLDKLLLRPGNLVGPRFEPGAELRDDLQAFAKVLVVGAGGLGCELLKDLALSGFRNLEVIDMDRIEVTNLNRQFLFRLEDVGKPKAEVAAKRVMERITGVEIVPHFCRIEDKEIEFYNDFSIIALGLDSIEARSYINTVACSFLEYDSDDNPREETIKPMVDGGTEGFKGHARVILPGITPCFECTVWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWNEVHGGVAFDPDNPEHMKWVYDEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIATECSKILSNYLTYNGSEGLHTEVARFERDKDCLVCGPGIRIELDTSITLQKFMDLLEEHPKLRLSKASITHQGKNLYMQAPPVLEEMTRSNLSLSLFNLMGRLPKDVVHVNGTTIKNDQKFSCSRKLRVVFKGVDGVTDMDTAGGA*

>Glyma.17g016000.2.p sequence-type=predicted peptide transcript=Glyma.17g016000.2 locus=Glyma.17g016000 ID=Glyma.17g016000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADTSGRSRDLDKLLLRPGNLVGPRFEPGAELRDDLQAFAKVLVVGAGGLGCELLKDLALSGFRNLEVIDMDRIEVTNLNRQFLFRLEDVGKPKAEVAAKRVMERITGVEIVPHFCRIEDKEIEFYNDFSIIALGLDSIEARSYINTVACSFLEYDSDDNPREETIKPMVDGGTEGFKGHARVILPGITPCFECTVWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWNEVHGGVAFDPDNPEHMKWVYDEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIATECSKILSNYLTYNGSEGLHTEVARFERDKDCLVCGPGIRIELDTSITLQKFMDLLEEHPKLRLSKASITHQGKNLYMQAPPVLEEMTRSNLSLSLFNLMGRLPKDVVHVNGTTIKNDQKFSCSRKLRVVFKGVDGVTDMDTAGGA*

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