SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G54470.1 | AT | uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) | JGI | N/A | IEA |
| GO:0006207 | GO-bp | 'de novo' pyrimidine nucleobase biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0006207 | GO-bp | 'de novo' pyrimidine nucleobase biosynthetic process | JGI | N/A | IEA |
| GO:0006221 | GO-bp | pyrimidine nucleotide biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0044205 | GO-bp | 'de novo' UMP biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0004590 | GO-mf | orotidine-5'-phosphate decarboxylase activity | EnsemblGenomes | N/A | IEA |
| GO:0004590 | GO-mf | orotidine-5'-phosphate decarboxylase activity | JGI | N/A | IEA |
| GO:0016829 | GO-mf | lyase activity | EnsemblGenomes | N/A | IEA |
| GO:0016831 | GO-mf | carboxy-lyase activity | EnsemblGenomes | N/A | IEA |
| KOG1377 | KOG | Uridine 5'- monophosphate synthase/orotate phosphoribosyltransferase | JGI | N/A | IEA |
| PTHR19278 | Panther | FAMILY NOT NAMED | JGI | N/A | IEA |
| PTHR19278:SF21 | Panther | JGI | N/A | IEA | |
| PF00215 | PFAM | Orotidine 5'-phosphate decarboxylase / HUMPS family | JGI | N/A | IEA |
| PWY-5686 | SoyCyc9 | UMP biosynthesis I | Plant Metabolic Network | ISS | |
| PWY-7211 | SoyCyc9 | superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis | Plant Metabolic Network | ISS | |
| PWY0-162 | SoyCyc9 | superpathway of pyrimidine ribonucleotides de novo biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-47880 | SoyCyc9-rxn | orotidine-5'-phosphate decarboxylase | Plant Metabolic Network | ISS |
|
Glyma.17g012700 not represented in the dataset |
Glyma.17g012700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma17g01620 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g012700.1 sequence-type=CDS polypeptide=Glyma.17g012700.1.p locus=Glyma.17g012700 ID=Glyma.17g012700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCGGCATCATCATTGATAGAGTCTCCAGTTCTTCAACTCCATGAGATCTCAGCTGTCAAGTTCGGCAACTTTAAGCTCAAATCTGGCATCTCCTCGCCAATCTACATAGACCTCCGCCTCATTATATCTTACCCTTCTCTCCTCCAGCAAATCTCTCAAACCCTTATTTCCTCAGTCTCTTCCACTTCCTTTGACCTCGTATCCGGTGTTCCTTTCACTGCCTTAGCCATTGCCACATGCGTCTCTCTTGCTCAGACCATTCCCATGCCTGGCCAAAGTTGCTTAATCATTGAGGATTTGGTTACCAGTGGCACATCAGTTTTGGAAACAGCAGCACCACTGCCTGCCTCGGGATTGAAGATAAAGGAGAATCAGAAGGTTGCTGCTTTGGCAAAGGTGGGGAAGCCTGCAACTAAGGTCAAGGCTTTGTCATTTGGGGAGAGGGCTAAGCTGTCAAAAAATCCAATCGGAAAGAGGTTGTTTGAGATAATGGCTGAAAAGGAGAGTAATCTGTGTTTGGCTGCTGATGTTGGAACTGCAGCTGAATTGCTTGAAATTGCTGGGAAGGTTGGACCTGAGATATGCTTGCTGAAGACTCATGTGGATATTTTTCCGGATTTTACACCTGATTTTGGCTCTATGCTTCTCTCGATTGCAGAAAAACATAACTTCTTAATCTTCGAGGATCGTAAATTTGCTGATATTGGTAACACAGTGACCATGCAATATGAAGGAGGGATCTTTCATATATTGGATTGGGCTCATATAGTAAATGCTCACATAATCTCAGGTCCTGGAATTGGTTTACCTCGTGGCAGGGGTCTATTACTGCTTGCTGAAATGAGTTCAGCTGGTAACCTTGCCAAAGGAGATTATACCACTGCTGCATTAAAAATTGCTGAGAATCATTCTGACTTTGTAATTGGCTTCATCTCAGTCAATCCTGCATCATGGCCAGGGGCACCTATAAATCCTTCTTTCATTCAGGCAACCCCTGGAGTTCAAATGGTGGTCCATGATAGGGGCAGTGACATCATCATTGTGGGGCGTGGCATCATCAAAGCAGTAAATCCAGAAGAGGCAGCTCGTGAATACCGTCTTCAAGGATGGAATGCGTATTTGGCTAAATGTACTTGA
>Glyma.17g012700.1.p sequence-type=predicted peptide transcript=Glyma.17g012700.1 locus=Glyma.17g012700 ID=Glyma.17g012700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSASSLIESPVLQLHEISAVKFGNFKLKSGISSPIYIDLRLIISYPSLLQQISQTLISSVSSTSFDLVSGVPFTALAIATCVSLAQTIPMPGQSCLIIEDLVTSGTSVLETAAPLPASGLKIKENQKVAALAKVGKPATKVKALSFGERAKLSKNPIGKRLFEIMAEKESNLCLAADVGTAAELLEIAGKVGPEICLLKTHVDIFPDFTPDFGSMLLSIAEKHNFLIFEDRKFADIGNTVTMQYEGGIFHILDWAHIVNAHIISGPGIGLPRGRGLLLLAEMSSAGNLAKGDYTTAALKIAENHSDFVIGFISVNPASWPGAPINPSFIQATPGVQMVVHDRGSDIIIVGRGIIKAVNPEEAAREYRLQGWNAYLAKCT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
