Glyma.17g012600

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Report for Sequence Feature Glyma.17g012600

Feature Type:	gene_model
Chromosome:	Gm17
Start:	970004
stop:	977758
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.17g012600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G11790.1	AT	arogenate dehydratase 1	JGI	N/A	IEA
AT1G11790.2	AT	arogenate dehydratase 1	JGI	N/A	IEA
GO:0008152	GO-bp	metabolic process	JGI	N/A	IEA
GO:0008652	GO-bp	cellular amino acid biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0009073	GO-bp	aromatic amino acid family biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0009094	GO-bp	L-phenylalanine biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0009094	GO-bp	L-phenylalanine biosynthetic process	JGI	N/A	IEA
GO:0009507	GO-cc	chloroplast	EnsemblGenomes	N/A	IEA
GO:0009536	GO-cc	plastid	EnsemblGenomes	N/A	IEA
GO:0009570	GO-cc	chloroplast stroma	EnsemblGenomes	N/A	IEA
GO:0004664	GO-mf	prephenate dehydratase activity	EnsemblGenomes	N/A	IEA
GO:0004664	GO-mf	prephenate dehydratase activity	JGI	N/A	IEA
GO:0016597	GO-mf	amino acid binding	JGI	N/A	IEA
GO:0016829	GO-mf	lyase activity	EnsemblGenomes	N/A	IEA
GO:0047769	GO-mf	arogenate dehydratase activity	EnsemblGenomes	N/A	IEA
KOG2797	KOG	Prephenate dehydratase	JGI	N/A	IEA
PTHR21022	Panther	PREPHENATE DEHYDRATASE (P PROTEIN)	JGI	N/A	IEA
PF00800	PFAM	Prephenate dehydratase	JGI	N/A	IEA
PF01842	PFAM	ACT domain	JGI	N/A	IEA
PWY-3462	SoyCyc9	L-phenylalanine biosynthesis II	Plant Metabolic Network		ISS
PWY-3481	SoyCyc9	superpathway of L-phenylalanine and L-tyrosine biosynthesis	Plant Metabolic Network		ISS
PWY-7432	SoyCyc9	L-phenylalanine biosynthesis III (cytosolic, plants)	Plant Metabolic Network		ISS
GN7V-60648	SoyCyc9-rxn	prephenate dehydratase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.17g012600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g012600 not represented in the dataset	Glyma.17g012600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.17g012600 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma17g01610	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.17g012600

Limit To All Plant Sequences

>Glyma.17g012600.2 sequence-type=transcript locus=Glyma.17g012600 ID=Glyma.17g012600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAGGCGAGTGCATTGTTTGTGTCTCACACGTTAAGTTAGAGACAATGTAATATAATACATATTAACTGGGCTGGTTAGTTACAGAATGTGTATGTATTATAACAATCTAAGGAAACTTGTAGCAAGCGACAATTCTGCTCACCTACCTGTTTCTTCGCGAATTGTTTTTGTTTCTCTCACATTTGAATCCCCAAACCAAACAGAACCAAATTTCTTCTAGTGGTGGAGGCACAGTTCGTATACGTATACCATCTGTTCCATTTATTTGTGGGGTCACCAAAAATTCTAAGCGCCAACCGTAATTCATTCACACTAAACAATTACTTAAACAATGTCATGCTGTGAATGAATAAACCAAACTCACCAACCACGACCACTCTCATGAACTCTGAACTTGTCTTTCTCTCTCTCTGACATTGTAGATTGGATTGCTTCATTTTGATGGCTCTTAAGGCTGTATCCATCTGGGGTTGTTACAAACCTCCTCCTCAATTGGGTGTTGGTGTTTCCAATTCTCATTCTACTCTGATTGGAAATCTAAGATATGATTATGACAAATGCCGCAAATGGGAGTGCTGTTGTTTGGGTGTTTTGGCTCAGAGAGCTACCACTGCTGTGGAAGATGAGGGCCCCAGTGTCCCACCTTTGGTTGACTCTTCAGGGGCTGCTGATGGTGTTCACCAAAATGAGTCAAAGGGCTTTCACAAGGACTTAAACTTACTTCCTAAGCCATTAACAGCAATTGACATTTCTTCTTATCCAAGAGATGGATCAAAGGTGCGCGTGGCTTATCAGGGACTTCCGGGGGCATATAGTGAGGATGCAGCTTTGAAAGCATATCCAAAATGTGAGACTGTGCCATGTGACAATTTTGAAGCTGCATTTAAGGCAGTTGAATTATGGTTGGTGAATAAAACTGTTCTACCCATTGAAAATTCTGTTGGTGGAAGCGTCCACCGTAATTATGACTTACTTCTTCGCCATAGGCTGCACATTGTTGGGGAGGTGCAGTTGCGAGTTAACCACTGCCTTTTAGGATTGCCTGGTGTGAGAAAGGAGGAGCTCAGAGCTGTTGTGAGTCATCCCCAGGCTTTTGCTCAATGTGAGACAACGCTTAGTGATTTAGGTGCTGTCAAGATTGCTGCACGTGATACTGCTGCTGCTGCTCAGACAGTGGCCTCAAATTGTGCAAGAGACACTGGAGCTATTGCAAGTTCCCGAGCTGCAGAAGTGTACGGGCTTGACATTCTTGCAGAAAGAATTCAGGATGATGATGAGAATATTACTCGTTTCTTGGTCCTTGCAAGGGAGCCTATAATTCCAGGAACTGACAGGCCCCATAAGACTAGCATTGTTTTCAGTCTAGAAGAAGGTCCAGGTGTACTATTCAAAGCCTTGGCAGTTTTTGCTATGAGGGATATTAATTTGTCAAAGATAGAGAGTCGTCCTTTGAAGCAGCGCTCATTGAGGGTTGTGGATCATTTAAATGAAGGGAGTGCCACGTACTTTGACTACCTCTTCTATATTGATATTGAAGCTTCTATGGCAGAACCTCGTGCACAATATGCTTTAGGACAGTTGCAGGAATTTGCTAGATTTCTTCGTGTTCTTGGTTGTTATCCTATGGATACAGTATTATAGAAGTTCAGTGTCTTAACTAGGAGCAACAGTCATGCTGTTCATTTTGCTGATAACATAAGTAGCTACTACCCCAGAGGTTCATCTTCAATCAGAGAGGTGGGCAAGAAGTATCCTTTAAAAGCATTGCCCCTGTCACCTCTTTCAAAAATCTTTTCATCTCCTAAGGAGGTGCTTTGAAGTATATCATCATAGTTTTGACAGTGGAGTGAATGCTGCTACAGGAATCTTCATTGTGTTTTATTCCTTCATTTAGATTTTAGAACTCTTCATATTAAAGAGAATTCCAATGCAAACTTAGTGACCAAAGTATGTACATATGGCTCTATTGAGCTATGGCAAATAAATGAAGGACCAAGCCACCCAAAATTTTCTTCTACCATTAACTGCTTTACCAATCCACATTCCACAATAATATGACTCCAGTACATTTTTTTTATTCAGTTGGTATAGTGAATAAGGACGTGTTTCTTACTGTGATTATTTGTGTTAACCAGGATTAAAAGGAATTGAATTTCCTTAACAGTGTGAGT

>Glyma.17g012600.3 sequence-type=transcript locus=Glyma.17g012600 ID=Glyma.17g012600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CGAATTGTTTTTGTTTCTCTCACATTTGAATCCCCAAACCAAACAGAACCAAATTTCTTCTAGTGGTGGAGGCACAGTTCGTATACGTATACCATCTGTTCCATTTATTTGTGGGGTCACCAAAAATTCTAAGCGCCAACCGTAATTCATTCACACTAAACAATTACTTAAACAATGTCATGCTGTGAATGAATAAACCAAACTCACCAACCACGACCACTCTCATGAACTCTGAACTTGTCTTTCTCTCTCTCTGACATTGTAGATTGGATTGCTTCATTTTGATGGCTCTTAAGGCTGTATCCATCTGGGGTTGTTACAAACCTCCTCCTCAATTGGGTGTTGGTGTTTCCAATTCTCATTCTACTCTGATTGGAAATCTAAGATATGATTATGACAAATGCCGCAAATGGGAGTGCTGTTGTTTGGGTGTTTTGGCTCAGAGAGCTACCACTGCTGTGGAAGATGAGGGCCCCAGTGTCCCACCTTTGGTTGACTCTTCAGGGGCTGCTGATGGTGTTCACCAAAATGAGTCAAAGGGCTTTCACAAGGACTTAAACTTACTTCCTAAGCCATTAACAGCAATTGACATTTCTTCTTATCCAAGAGATGGATCAAAGGTGCGCGTGGCTTATCAGGGACTTCCGGGGGCATATAGTGAGGATGCAGCTTTGAAAGCATATCCAAAATGTGAGACTGTGCCATGTGACAATTTTGAAGCTGCATTTAAGGCAGTTGAATTATGGTTGGTGAATAAAACTGTTCTACCCATTGAAAATTCTGTTGGTGGAAGCGTCCACCGTAATTATGACTTACTTCTTCGCCATAGGCTGCACATTGTTGGGGAGGTGCAGTTGCGAGTTAACCACTGCCTTTTAGGATTGCCTGGTGTGAGAAAGGAGGAGCTCAGAGCTGTTGTGAGTCATCCCCAGGCTTTTGCTCAATGTGAGACAACGCTTAGTGATTTAGGTGCTGTCAAGATTGCTGCACGTGATACTGCTGCTGCTGCTCAGACAGTGGCCTCAAATTGTGCAAGAGACACTGGAGCTATTGCAAGTTCCCGAGCTGCAGAAGTGTACGGGCTTGACATTCTTGCAGAAAGAATTCAGGATGATGATGAGAATATTACTCGTTTCTTGGTCCTTGCAAGGGAGCCTATAATTCCAGGAACTGACAGGCCCCATAAGACTAGCATTGTTTTCAGTCTAGAAGAAGGTCCAGGTGTACTATTCAAAGCCTTGGCAGTTTTTGCTATGAGGGATATTAATTTGTCAAAGAGAGTCGTCCTTTGAAGCAGCGCTCATTGAGGGTTGTGGATCATTTAAATGAAGGGAGTGCCACGTACTTTGACTACCTCTTCTATATTGATATTGAAGCTTCTATGGCAGAACCTCGTGCACAATATGCTTTAGGACAGTTGCAGGAATTTGCTAGATTTCTTCGTGTTCTTGGTTGTTATCCTATGGATACAGTATTATAGAAGTTCAGTGTCTTAACTAGGAGCAACAGTCATGCTGTTCATTTTGCTGATAACATAAGTAGCTACTACCCCAGAGGTTCATCTTCAATCAGAGAGGTGGGCAAGAAGTATCCTTTAAAAGCATTGCCCCTGTCACCTCTTTCAAAAATCTTTTCATCTCCTAAGGAGGTGCTTTGAAGTATATCATCATAGTTTTGACAGTGGAGTGAATGCTGCTACAGGAATCTTCATTGTGTTTTATTCCTTCATTTAGATTTTAGAACTCTTCATATTAAAGAGAATTCCAATGCAAACTTAGTGACCAAAGTATGTACATATGGCTCTATTGAGCTATGGCAAATAAATGAAGGACCAAGCCACCCAAAATTTTCTTCTACCATTAACTGCTTTACCAATCCACATTCCACAATAATATGACTCCAGTACATTTTTTTTATTCAGTTGGTATAGTGAATAAGGACGTGTTTCTTACTGTGATTATTTGTGTTAACCAGGATTAAAAGGAATTGAATTTCCTTAACAGTGTGA

Coding sequences of Glyma.17g012600

Limit To All Plant Sequences

>Glyma.17g012600.1 sequence-type=CDS polypeptide=Glyma.17g012600.1.p locus=Glyma.17g012600 ID=Glyma.17g012600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCTTAAGGCTGTATCCATCTGGGGTTGTTACAAACCTCCTCCTCAATTGGGTGTTGGTGTTTCCAATTCTCATTCTACTCTGATTGGAAATCTAAGATATGATTATGACAAATGCCGCAAATGGGAGTGCTGTTGTTTGGGTGTTTTGGCTCAGAGAGCTACCACTGCTGTGGAAGATGAGGGCCCCAGTGTCCCACCTTTGGTTGACTCTTCAGGGGCTGCTGATGGTGTTCACCAAAATGAGTCAAAGGGCTTTCACAAGGACTTAAACTTACTTCCTAAGCCATTAACAGCAATTGACATTTCTTCTTATCCAAGAGATGGATCAAAGGTGCGCGTGGCTTATCAGGGACTTCCGGGGGCATATAGTGAGGATGCAGCTTTGAAAGCATATCCAAAATGTGAGACTGTGCCATGTGACAATTTTGAAGCTGCATTTAAGGCAGTTGAATTATGGTTGGTGAATAAAACTGTTCTACCCATTGAAAATTCTGTTGGTGGAAGCGTCCACCGTAATTATGACTTACTTCTTCGCCATAGGCTGCACATTGTTGGGGAGGTGCAGTTGCGAGTTAACCACTGCCTTTTAGGATTGCCTGGTGTGAGAAAGGAGGAGCTCAGAGCTGTTGTGAGTCATCCCCAGGCTTTTGCTCAATGTGAGACAACGCTTAGTGATTTAGGTGCTGTCAAGATTGCTGCACGTGATACTGCTGCTGCTGCTCAGACAGTGGCCTCAAATTGTGCAAGAGACACTGGAGCTATTGCAAGTTCCCGAGCTGCAGAAGTGTACGGGCTTGACATTCTTGCAGAAAGAATTCAGGATGATGATGAGAATATTACTCGTTTCTTGGTCCTTGCAAGGGAGCCTATAATTCCAGGAACTGACAGGCCCCATAAGACTAGCATTGTTTTCAGTCTAGAAGAAGGTCCAGGTGTACTATTCAAAGCCTTGGCAGTTTTTGCTATGAGGGATATTAATTTGTCAAAGATAGAGAGTCGTCCTTTGAAGCAGCGCTCATTGAGGGTTGTGGATCATTTAAATGAAGGGAGTGCCACGTACTTTGACTACCTCTTCTATATTGATATTGAAGCTTCTATGGCAGAACCTCGTGCACAATATGCTTTAGGACAGTTGCAGATTTCTTCGTGTTCTTGGTTGTTATCCTATGGATACAGTATTATAGAAGTTCAGTGTCTTAACTAG

>Glyma.17g012600.2 sequence-type=CDS polypeptide=Glyma.17g012600.2.p locus=Glyma.17g012600 ID=Glyma.17g012600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCTTAAGGCTGTATCCATCTGGGGTTGTTACAAACCTCCTCCTCAATTGGGTGTTGGTGTTTCCAATTCTCATTCTACTCTGATTGGAAATCTAAGATATGATTATGACAAATGCCGCAAATGGGAGTGCTGTTGTTTGGGTGTTTTGGCTCAGAGAGCTACCACTGCTGTGGAAGATGAGGGCCCCAGTGTCCCACCTTTGGTTGACTCTTCAGGGGCTGCTGATGGTGTTCACCAAAATGAGTCAAAGGGCTTTCACAAGGACTTAAACTTACTTCCTAAGCCATTAACAGCAATTGACATTTCTTCTTATCCAAGAGATGGATCAAAGGTGCGCGTGGCTTATCAGGGACTTCCGGGGGCATATAGTGAGGATGCAGCTTTGAAAGCATATCCAAAATGTGAGACTGTGCCATGTGACAATTTTGAAGCTGCATTTAAGGCAGTTGAATTATGGTTGGTGAATAAAACTGTTCTACCCATTGAAAATTCTGTTGGTGGAAGCGTCCACCGTAATTATGACTTACTTCTTCGCCATAGGCTGCACATTGTTGGGGAGGTGCAGTTGCGAGTTAACCACTGCCTTTTAGGATTGCCTGGTGTGAGAAAGGAGGAGCTCAGAGCTGTTGTGAGTCATCCCCAGGCTTTTGCTCAATGTGAGACAACGCTTAGTGATTTAGGTGCTGTCAAGATTGCTGCACGTGATACTGCTGCTGCTGCTCAGACAGTGGCCTCAAATTGTGCAAGAGACACTGGAGCTATTGCAAGTTCCCGAGCTGCAGAAGTGTACGGGCTTGACATTCTTGCAGAAAGAATTCAGGATGATGATGAGAATATTACTCGTTTCTTGGTCCTTGCAAGGGAGCCTATAATTCCAGGAACTGACAGGCCCCATAAGACTAGCATTGTTTTCAGTCTAGAAGAAGGTCCAGGTGTACTATTCAAAGCCTTGGCAGTTTTTGCTATGAGGGATATTAATTTGTCAAAGATAGAGAGTCGTCCTTTGAAGCAGCGCTCATTGAGGGTTGTGGATCATTTAAATGAAGGGAGTGCCACGTACTTTGACTACCTCTTCTATATTGATATTGAAGCTTCTATGGCAGAACCTCGTGCACAATATGCTTTAGGACAGTTGCAGGAATTTGCTAGATTTCTTCGTGTTCTTGGTTGTTATCCTATGGATACAGTATTATAG

>Glyma.17g012600.3 sequence-type=CDS polypeptide=Glyma.17g012600.3.p locus=Glyma.17g012600 ID=Glyma.17g012600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCTTAAGGCTGTATCCATCTGGGGTTGTTACAAACCTCCTCCTCAATTGGGTGTTGGTGTTTCCAATTCTCATTCTACTCTGATTGGAAATCTAAGATATGATTATGACAAATGCCGCAAATGGGAGTGCTGTTGTTTGGGTGTTTTGGCTCAGAGAGCTACCACTGCTGTGGAAGATGAGGGCCCCAGTGTCCCACCTTTGGTTGACTCTTCAGGGGCTGCTGATGGTGTTCACCAAAATGAGTCAAAGGGCTTTCACAAGGACTTAAACTTACTTCCTAAGCCATTAACAGCAATTGACATTTCTTCTTATCCAAGAGATGGATCAAAGGTGCGCGTGGCTTATCAGGGACTTCCGGGGGCATATAGTGAGGATGCAGCTTTGAAAGCATATCCAAAATGTGAGACTGTGCCATGTGACAATTTTGAAGCTGCATTTAAGGCAGTTGAATTATGGTTGGTGAATAAAACTGTTCTACCCATTGAAAATTCTGTTGGTGGAAGCGTCCACCGTAATTATGACTTACTTCTTCGCCATAGGCTGCACATTGTTGGGGAGGTGCAGTTGCGAGTTAACCACTGCCTTTTAGGATTGCCTGGTGTGAGAAAGGAGGAGCTCAGAGCTGTTGTGAGTCATCCCCAGGCTTTTGCTCAATGTGAGACAACGCTTAGTGATTTAGGTGCTGTCAAGATTGCTGCACGTGATACTGCTGCTGCTGCTCAGACAGTGGCCTCAAATTGTGCAAGAGACACTGGAGCTATTGCAAGTTCCCGAGCTGCAGAAGTGTACGGGCTTGACATTCTTGCAGAAAGAATTCAGGATGATGATGAGAATATTACTCGTTTCTTGGTCCTTGCAAGGGAGCCTATAATTCCAGGAACTGACAGGCCCCATAAGACTAGCATTGTTTTCAGTCTAGAAGAAGGTCCAGGTGTACTATTCAAAGCCTTGGCAGTTTTTGCTATGAGGGATATTAATTTGTCAAAGAGAGTCGTCCTTTGA

Predicted protein sequences of Glyma.17g012600

Limit To All Plant Sequences

>Glyma.17g012600.1.p sequence-type=predicted peptide transcript=Glyma.17g012600.1 locus=Glyma.17g012600 ID=Glyma.17g012600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALKAVSIWGCYKPPPQLGVGVSNSHSTLIGNLRYDYDKCRKWECCCLGVLAQRATTAVEDEGPSVPPLVDSSGAADGVHQNESKGFHKDLNLLPKPLTAIDISSYPRDGSKVRVAYQGLPGAYSEDAALKAYPKCETVPCDNFEAAFKAVELWLVNKTVLPIENSVGGSVHRNYDLLLRHRLHIVGEVQLRVNHCLLGLPGVRKEELRAVVSHPQAFAQCETTLSDLGAVKIAARDTAAAAQTVASNCARDTGAIASSRAAEVYGLDILAERIQDDDENITRFLVLAREPIIPGTDRPHKTSIVFSLEEGPGVLFKALAVFAMRDINLSKIESRPLKQRSLRVVDHLNEGSATYFDYLFYIDIEASMAEPRAQYALGQLQISSCSWLLSYGYSIIEVQCLN*

>Glyma.17g012600.2.p sequence-type=predicted peptide transcript=Glyma.17g012600.2 locus=Glyma.17g012600 ID=Glyma.17g012600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALKAVSIWGCYKPPPQLGVGVSNSHSTLIGNLRYDYDKCRKWECCCLGVLAQRATTAVEDEGPSVPPLVDSSGAADGVHQNESKGFHKDLNLLPKPLTAIDISSYPRDGSKVRVAYQGLPGAYSEDAALKAYPKCETVPCDNFEAAFKAVELWLVNKTVLPIENSVGGSVHRNYDLLLRHRLHIVGEVQLRVNHCLLGLPGVRKEELRAVVSHPQAFAQCETTLSDLGAVKIAARDTAAAAQTVASNCARDTGAIASSRAAEVYGLDILAERIQDDDENITRFLVLAREPIIPGTDRPHKTSIVFSLEEGPGVLFKALAVFAMRDINLSKIESRPLKQRSLRVVDHLNEGSATYFDYLFYIDIEASMAEPRAQYALGQLQEFARFLRVLGCYPMDTVL*

>Glyma.17g012600.3.p sequence-type=predicted peptide transcript=Glyma.17g012600.3 locus=Glyma.17g012600 ID=Glyma.17g012600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALKAVSIWGCYKPPPQLGVGVSNSHSTLIGNLRYDYDKCRKWECCCLGVLAQRATTAVEDEGPSVPPLVDSSGAADGVHQNESKGFHKDLNLLPKPLTAIDISSYPRDGSKVRVAYQGLPGAYSEDAALKAYPKCETVPCDNFEAAFKAVELWLVNKTVLPIENSVGGSVHRNYDLLLRHRLHIVGEVQLRVNHCLLGLPGVRKEELRAVVSHPQAFAQCETTLSDLGAVKIAARDTAAAAQTVASNCARDTGAIASSRAAEVYGLDILAERIQDDDENITRFLVLAREPIIPGTDRPHKTSIVFSLEEGPGVLFKALAVFAMRDINLSKRVVL*

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